Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02810 and DZA65_RS02820 are separated by 969 nucleotides DZA65_RS02820 and DZA65_RS02825 are separated by 163 nucleotides DZA65_RS02825 and DZA65_RS02830 are separated by 162 nucleotides
DZA65_RS02810: DZA65_RS02810 - transcriptional regulator, at 604,450 to 604,671
_RS02810
DZA65_RS02820: DZA65_RS02820 - tyrosine-type recombinase/integrase, at 605,641 to 606,900
_RS02820
DZA65_RS02825: DZA65_RS02825 - tRNA-Phe, at 607,064 to 607,139
_RS02825
DZA65_RS02830: DZA65_RS02830 - transcriptional regulator, at 607,302 to 607,877
_RS02830
Position (kb) 605
606
607 Strain fitness (log2 ratio) -2
-1
0
1
2 at 604.674 kb on + strand at 604.675 kb on - strand at 604.751 kb on - strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.800 kb on + strand at 604.800 kb on + strand at 604.801 kb on - strand at 604.825 kb on + strand at 604.850 kb on + strand at 604.850 kb on + strand at 604.850 kb on + strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.937 kb on - strand at 604.937 kb on - strand at 604.989 kb on + strand at 604.990 kb on - strand at 604.990 kb on - strand at 605.073 kb on - strand at 605.091 kb on + strand at 605.092 kb on - strand at 605.113 kb on + strand at 605.113 kb on + strand at 605.114 kb on - strand at 605.114 kb on - strand at 605.114 kb on - strand at 605.114 kb on - strand at 605.145 kb on - strand at 605.162 kb on + strand at 605.163 kb on - strand at 605.163 kb on - strand at 605.207 kb on + strand at 605.207 kb on + strand at 605.208 kb on - strand at 605.208 kb on - strand at 605.263 kb on + strand at 605.263 kb on + strand at 605.264 kb on - strand at 605.405 kb on + strand at 605.438 kb on + strand at 605.438 kb on + strand at 605.438 kb on + strand at 605.457 kb on - strand at 605.512 kb on + strand at 605.513 kb on - strand at 605.513 kb on - strand at 605.561 kb on + strand at 605.561 kb on + strand at 605.561 kb on + strand at 605.561 kb on + strand at 605.561 kb on + strand at 605.562 kb on - strand at 605.562 kb on - strand at 605.582 kb on + strand at 605.582 kb on + strand at 605.583 kb on - strand at 605.583 kb on - strand at 605.583 kb on - strand at 605.583 kb on - strand at 605.616 kb on + strand at 605.617 kb on - strand at 605.617 kb on - strand at 605.617 kb on - strand at 605.653 kb on - strand at 605.767 kb on - strand, within DZA65_RS02820 at 605.767 kb on - strand, within DZA65_RS02820 at 605.856 kb on + strand, within DZA65_RS02820 at 605.856 kb on + strand, within DZA65_RS02820 at 605.856 kb on + strand, within DZA65_RS02820 at 605.856 kb on + strand, within DZA65_RS02820 at 605.856 kb on + strand, within DZA65_RS02820 at 605.856 kb on + strand, within DZA65_RS02820 at 605.856 kb on + strand, within DZA65_RS02820 at 605.856 kb on + strand, within DZA65_RS02820 at 605.863 kb on + strand, within DZA65_RS02820 at 605.864 kb on - strand, within DZA65_RS02820 at 606.002 kb on - strand, within DZA65_RS02820 at 606.004 kb on + strand, within DZA65_RS02820 at 606.005 kb on - strand, within DZA65_RS02820 at 606.005 kb on - strand at 606.005 kb on - strand, within DZA65_RS02820 at 606.010 kb on + strand, within DZA65_RS02820 at 606.010 kb on + strand, within DZA65_RS02820 at 606.011 kb on - strand, within DZA65_RS02820 at 606.011 kb on - strand, within DZA65_RS02820 at 606.011 kb on - strand, within DZA65_RS02820 at 606.175 kb on + strand, within DZA65_RS02820 at 606.175 kb on + strand, within DZA65_RS02820 at 606.176 kb on - strand, within DZA65_RS02820 at 606.176 kb on - strand, within DZA65_RS02820 at 606.207 kb on + strand, within DZA65_RS02820 at 606.207 kb on + strand, within DZA65_RS02820 at 606.207 kb on + strand, within DZA65_RS02820 at 606.207 kb on + strand, within DZA65_RS02820 at 606.208 kb on - strand, within DZA65_RS02820 at 606.265 kb on + strand, within DZA65_RS02820 at 606.265 kb on + strand, within DZA65_RS02820 at 606.266 kb on - strand, within DZA65_RS02820 at 606.266 kb on - strand, within DZA65_RS02820 at 606.300 kb on - strand, within DZA65_RS02820 at 606.373 kb on + strand, within DZA65_RS02820 at 606.380 kb on + strand, within DZA65_RS02820 at 606.409 kb on + strand, within DZA65_RS02820 at 606.409 kb on + strand, within DZA65_RS02820 at 606.612 kb on + strand, within DZA65_RS02820 at 606.613 kb on - strand, within DZA65_RS02820 at 606.613 kb on - strand, within DZA65_RS02820 at 606.682 kb on - strand, within DZA65_RS02820 at 606.682 kb on - strand, within DZA65_RS02820 at 606.682 kb on - strand, within DZA65_RS02820 at 606.682 kb on - strand, within DZA65_RS02820 at 606.776 kb on + strand at 606.776 kb on + strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.777 kb on - strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.780 kb on + strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.781 kb on - strand at 606.821 kb on + strand at 606.822 kb on - strand at 606.822 kb on - strand at 606.823 kb on + strand at 606.823 kb on + strand at 606.823 kb on + strand at 606.823 kb on + strand at 606.823 kb on + strand at 606.824 kb on - strand at 606.824 kb on - strand at 606.824 kb on - strand at 606.848 kb on + strand at 606.848 kb on + strand at 606.848 kb on + strand at 606.849 kb on - strand at 606.849 kb on - strand at 606.856 kb on - strand at 606.914 kb on + strand at 606.914 kb on + strand at 606.914 kb on + strand at 606.915 kb on - strand at 606.943 kb on - strand at 606.991 kb on + strand at 607.038 kb on + strand at 607.039 kb on - strand at 607.041 kb on - strand at 607.041 kb on - strand at 607.244 kb on + strand at 607.341 kb on + strand at 607.341 kb on + strand at 607.341 kb on + strand at 607.341 kb on + strand at 607.342 kb on - strand at 607.342 kb on - strand at 607.344 kb on + strand at 607.344 kb on + strand at 607.344 kb on + strand at 607.344 kb on + strand at 607.344 kb on + strand at 607.345 kb on - strand at 607.345 kb on - strand at 607.345 kb on - strand at 607.345 kb on - strand at 607.345 kb on - strand at 607.395 kb on + strand, within DZA65_RS02830 at 607.395 kb on + strand, within DZA65_RS02830 at 607.440 kb on + strand, within DZA65_RS02830 at 607.440 kb on + strand, within DZA65_RS02830 at 607.441 kb on - strand, within DZA65_RS02830 at 607.441 kb on - strand, within DZA65_RS02830 at 607.441 kb on - strand, within DZA65_RS02830 at 607.490 kb on + strand, within DZA65_RS02830 at 607.490 kb on + strand, within DZA65_RS02830 at 607.490 kb on + strand, within DZA65_RS02830 at 607.491 kb on - strand, within DZA65_RS02830 at 607.491 kb on - strand, within DZA65_RS02830 at 607.491 kb on - strand, within DZA65_RS02830 at 607.495 kb on + strand, within DZA65_RS02830 at 607.495 kb on + strand, within DZA65_RS02830 at 607.495 kb on + strand, within DZA65_RS02830 at 607.496 kb on - strand, within DZA65_RS02830 at 607.496 kb on - strand, within DZA65_RS02830 at 607.496 kb on - strand, within DZA65_RS02830 at 607.496 kb on - strand, within DZA65_RS02830 at 607.496 kb on - strand, within DZA65_RS02830 at 607.501 kb on + strand, within DZA65_RS02830 at 607.502 kb on - strand, within DZA65_RS02830 at 607.630 kb on + strand, within DZA65_RS02830 at 607.631 kb on - strand, within DZA65_RS02830 at 607.635 kb on + strand, within DZA65_RS02830 at 607.636 kb on - strand, within DZA65_RS02830 at 607.686 kb on - strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.694 kb on + strand, within DZA65_RS02830 at 607.695 kb on - strand, within DZA65_RS02830 at 607.695 kb on - strand, within DZA65_RS02830 at 607.695 kb on - strand, within DZA65_RS02830 at 607.695 kb on - strand, within DZA65_RS02830 at 607.695 kb on - strand, within DZA65_RS02830 at 607.715 kb on - strand, within DZA65_RS02830 at 607.729 kb on + strand, within DZA65_RS02830 at 607.729 kb on + strand, within DZA65_RS02830 at 607.729 kb on + strand, within DZA65_RS02830 at 607.730 kb on - strand, within DZA65_RS02830 at 607.779 kb on + strand, within DZA65_RS02830 at 607.779 kb on + strand, within DZA65_RS02830 at 607.780 kb on - strand, within DZA65_RS02830 at 607.780 kb on - strand, within DZA65_RS02830 at 607.780 kb on - strand, within DZA65_RS02830 at 607.780 kb on - strand, within DZA65_RS02830 at 607.803 kb on - strand, within DZA65_RS02830 at 607.889 kb on + strand at 607.889 kb on + strand at 607.889 kb on + strand at 607.889 kb on + strand at 607.889 kb on + strand at 607.889 kb on + strand at 607.890 kb on - strand at 607.890 kb on - strand at 607.890 kb on - strand at 607.890 kb on - strand at 607.890 kb on - strand at 607.890 kb on - strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.893 kb on + strand at 607.894 kb on - strand at 607.894 kb on - strand at 607.894 kb on - strand at 607.894 kb on - strand at 607.894 kb on - strand at 607.894 kb on - strand at 607.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 604,674 + +0.6 604,675 - +0.1 604,751 - -2.3 604,797 + +0.8 604,797 + +2.6 604,797 + -0.7 604,797 + +0.2 604,798 - -1.4 604,798 - -0.2 604,798 - -0.8 604,798 - +1.6 604,798 - +0.4 604,800 + -1.5 604,800 + +1.6 604,801 - -0.4 604,825 + -0.9 604,850 + -0.4 604,850 + +0.5 604,850 + +0.1 604,851 - -0.2 604,851 - +0.1 604,851 - -2.1 604,851 - +0.1 604,851 - -1.3 604,851 - +0.2 604,851 - -0.1 604,851 - -1.4 604,865 + -1.2 604,865 + +1.3 604,865 + -0.4 604,865 + -1.8 604,937 - +0.6 604,937 - -0.6 604,989 + -2.4 604,990 - +1.4 604,990 - -0.7 605,073 - -0.7 605,091 + +0.3 605,092 - -0.3 605,113 + +1.6 605,113 + -0.9 605,114 - +1.9 605,114 - +0.1 605,114 - +0.5 605,114 - -0.2 605,145 - -2.1 605,162 + -0.8 605,163 - +0.3 605,163 - -0.9 605,207 + -1.0 605,207 + +0.6 605,208 - -0.6 605,208 - -1.7 605,263 + -1.6 605,263 + +0.4 605,264 - -0.2 605,405 + -1.7 605,438 + +1.1 605,438 + -0.7 605,438 + +0.1 605,457 - -0.7 605,512 + -1.0 605,513 - -1.1 605,513 - -1.0 605,561 + -0.1 605,561 + +2.0 605,561 + +2.6 605,561 + +0.1 605,561 + +1.1 605,562 - -1.0 605,562 - -0.4 605,582 + -0.4 605,582 + -0.8 605,583 - -2.4 605,583 - +0.9 605,583 - -0.2 605,583 - +0.7 605,616 + -0.4 605,617 - -0.9 605,617 - +0.3 605,617 - -1.4 605,653 - -0.7 605,767 - DZA65_RS02820 0.10 -1.1 605,767 - DZA65_RS02820 0.10 +0.3 605,856 + DZA65_RS02820 0.17 -2.2 605,856 + DZA65_RS02820 0.17 -0.1 605,856 + DZA65_RS02820 0.17 +0.3 605,856 + DZA65_RS02820 0.17 +0.9 605,856 + DZA65_RS02820 0.17 -1.7 605,856 + DZA65_RS02820 0.17 -0.7 605,856 + DZA65_RS02820 0.17 +0.2 605,856 + DZA65_RS02820 0.17 -2.3 605,863 + DZA65_RS02820 0.18 -1.2 605,864 - DZA65_RS02820 0.18 -0.2 606,002 - DZA65_RS02820 0.29 -0.2 606,004 + DZA65_RS02820 0.29 +1.1 606,005 - DZA65_RS02820 0.29 +0.2 606,005 - +0.3 606,005 - DZA65_RS02820 0.29 +0.1 606,010 + DZA65_RS02820 0.29 -0.7 606,010 + DZA65_RS02820 0.29 +0.4 606,011 - DZA65_RS02820 0.29 -0.8 606,011 - DZA65_RS02820 0.29 -1.9 606,011 - DZA65_RS02820 0.29 -0.8 606,175 + DZA65_RS02820 0.42 -1.2 606,175 + DZA65_RS02820 0.42 +0.6 606,176 - DZA65_RS02820 0.42 +0.1 606,176 - DZA65_RS02820 0.42 -0.5 606,207 + DZA65_RS02820 0.45 -1.1 606,207 + DZA65_RS02820 0.45 -0.6 606,207 + DZA65_RS02820 0.45 +0.6 606,207 + DZA65_RS02820 0.45 -1.4 606,208 - DZA65_RS02820 0.45 -0.3 606,265 + DZA65_RS02820 0.50 -1.5 606,265 + DZA65_RS02820 0.50 -0.4 606,266 - DZA65_RS02820 0.50 -0.4 606,266 - DZA65_RS02820 0.50 -2.1 606,300 - DZA65_RS02820 0.52 +0.2 606,373 + DZA65_RS02820 0.58 -1.3 606,380 + DZA65_RS02820 0.59 -0.1 606,409 + DZA65_RS02820 0.61 -2.2 606,409 + DZA65_RS02820 0.61 -0.2 606,612 + DZA65_RS02820 0.77 +0.4 606,613 - DZA65_RS02820 0.77 -1.6 606,613 - DZA65_RS02820 0.77 +1.6 606,682 - DZA65_RS02820 0.83 +1.6 606,682 - DZA65_RS02820 0.83 +0.1 606,682 - DZA65_RS02820 0.83 -0.5 606,682 - DZA65_RS02820 0.83 +0.1 606,776 + +0.1 606,776 + -0.4 606,777 - +0.6 606,777 - +0.2 606,777 - +2.3 606,777 - +0.3 606,777 - +0.5 606,777 - -0.4 606,777 - -1.7 606,777 - -0.1 606,780 + -0.7 606,780 + +0.3 606,780 + -1.4 606,780 + +0.9 606,780 + -1.4 606,780 + -0.8 606,780 + -0.4 606,780 + -0.9 606,780 + -0.7 606,780 + -1.4 606,781 - -0.2 606,781 - -0.6 606,781 - -1.3 606,781 - +0.3 606,781 - -0.8 606,781 - -0.5 606,781 - +0.4 606,821 + -0.8 606,822 - -0.2 606,822 - -0.3 606,823 + +0.3 606,823 + -1.1 606,823 + -0.5 606,823 + -0.6 606,823 + -1.7 606,824 - -0.9 606,824 - -0.3 606,824 - -1.2 606,848 + +2.0 606,848 + +1.0 606,848 + +0.1 606,849 - -0.8 606,849 - +0.1 606,856 - -0.1 606,914 + -0.4 606,914 + -1.5 606,914 + +0.4 606,915 - -0.4 606,943 - +0.5 606,991 + -0.2 607,038 + -0.8 607,039 - -0.0 607,041 - -0.2 607,041 - +0.2 607,244 + -2.5 607,341 + -0.2 607,341 + +0.6 607,341 + -0.2 607,341 + -0.5 607,342 - +0.1 607,342 - -0.2 607,344 + -0.2 607,344 + -0.5 607,344 + -1.5 607,344 + -1.7 607,344 + -1.2 607,345 - +0.6 607,345 - -0.4 607,345 - -1.5 607,345 - -0.8 607,345 - -1.7 607,395 + DZA65_RS02830 0.16 +0.9 607,395 + DZA65_RS02830 0.16 -0.5 607,440 + DZA65_RS02830 0.24 +1.6 607,440 + DZA65_RS02830 0.24 -1.8 607,441 - DZA65_RS02830 0.24 -0.0 607,441 - DZA65_RS02830 0.24 -0.7 607,441 - DZA65_RS02830 0.24 -2.4 607,490 + DZA65_RS02830 0.33 -1.8 607,490 + DZA65_RS02830 0.33 +0.9 607,490 + DZA65_RS02830 0.33 +0.2 607,491 - DZA65_RS02830 0.33 -1.0 607,491 - DZA65_RS02830 0.33 +1.1 607,491 - DZA65_RS02830 0.33 +0.3 607,495 + DZA65_RS02830 0.34 -0.4 607,495 + DZA65_RS02830 0.34 +0.1 607,495 + DZA65_RS02830 0.34 -0.5 607,496 - DZA65_RS02830 0.34 -0.3 607,496 - DZA65_RS02830 0.34 +0.1 607,496 - DZA65_RS02830 0.34 -1.2 607,496 - DZA65_RS02830 0.34 +0.2 607,496 - DZA65_RS02830 0.34 -0.1 607,501 + DZA65_RS02830 0.35 -0.8 607,502 - DZA65_RS02830 0.35 +0.1 607,630 + DZA65_RS02830 0.57 -1.9 607,631 - DZA65_RS02830 0.57 -0.5 607,635 + DZA65_RS02830 0.58 -0.4 607,636 - DZA65_RS02830 0.58 -0.9 607,686 - DZA65_RS02830 0.67 -1.7 607,694 + DZA65_RS02830 0.68 +0.6 607,694 + DZA65_RS02830 0.68 -0.5 607,694 + DZA65_RS02830 0.68 -0.2 607,694 + DZA65_RS02830 0.68 +0.1 607,694 + DZA65_RS02830 0.68 +0.1 607,694 + DZA65_RS02830 0.68 -0.6 607,695 - DZA65_RS02830 0.68 +0.0 607,695 - DZA65_RS02830 0.68 +0.9 607,695 - DZA65_RS02830 0.68 -1.5 607,695 - DZA65_RS02830 0.68 -1.2 607,695 - DZA65_RS02830 0.68 -0.4 607,715 - DZA65_RS02830 0.72 +0.2 607,729 + DZA65_RS02830 0.74 -0.4 607,729 + DZA65_RS02830 0.74 -0.7 607,729 + DZA65_RS02830 0.74 -0.4 607,730 - DZA65_RS02830 0.74 -1.3 607,779 + DZA65_RS02830 0.83 -0.4 607,779 + DZA65_RS02830 0.83 -0.2 607,780 - DZA65_RS02830 0.83 -2.2 607,780 - DZA65_RS02830 0.83 +0.1 607,780 - DZA65_RS02830 0.83 -0.4 607,780 - DZA65_RS02830 0.83 -0.4 607,803 - DZA65_RS02830 0.87 +0.8 607,889 + -1.6 607,889 + +0.6 607,889 + -1.1 607,889 + -1.4 607,889 + -0.8 607,889 + -0.9 607,890 - -0.5 607,890 - -2.1 607,890 - -0.9 607,890 - +1.6 607,890 - -2.4 607,890 - +0.4 607,893 + -1.4 607,893 + -0.4 607,893 + -1.9 607,893 + -0.9 607,893 + -0.8 607,893 + -1.2 607,893 + -0.2 607,893 + +0.1 607,893 + -0.6 607,893 + -0.2 607,894 - -1.4 607,894 - -0.4 607,894 - +0.6 607,894 - -0.2 607,894 - -0.4 607,894 - +1.4 607,894 - -1.4
Or see this region's nucleotide sequence