Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02800 and DZA65_RS02805 are separated by 104 nucleotides DZA65_RS02805 and DZA65_RS02810 are separated by 120 nucleotides DZA65_RS02810 and DZA65_RS02820 are separated by 969 nucleotides
DZA65_RS02800: DZA65_RS02800 - helix-turn-helix transcriptional regulator, at 603,698 to 603,964
_RS02800
DZA65_RS02805: DZA65_RS02805 - helix-turn-helix transcriptional regulator, at 604,069 to 604,329
_RS02805
DZA65_RS02810: DZA65_RS02810 - transcriptional regulator, at 604,450 to 604,671
_RS02810
DZA65_RS02820: DZA65_RS02820 - tyrosine-type recombinase/integrase, at 605,641 to 606,900
_RS02820
Position (kb) 604
605 Strain fitness (log2 ratio) -2
-1
0
1
2 at 603.450 kb on - strand at 603.506 kb on - strand at 603.527 kb on - strand at 603.527 kb on - strand at 603.616 kb on - strand at 603.636 kb on + strand at 603.637 kb on - strand at 603.686 kb on - strand at 603.687 kb on + strand at 603.688 kb on - strand at 603.770 kb on - strand, within DZA65_RS02800 at 603.772 kb on - strand, within DZA65_RS02800 at 603.793 kb on + strand, within DZA65_RS02800 at 603.793 kb on + strand, within DZA65_RS02800 at 603.839 kb on + strand, within DZA65_RS02800 at 603.839 kb on + strand, within DZA65_RS02800 at 603.840 kb on - strand, within DZA65_RS02800 at 603.840 kb on - strand, within DZA65_RS02800 at 603.860 kb on + strand, within DZA65_RS02800 at 603.900 kb on - strand, within DZA65_RS02800 at 603.900 kb on - strand, within DZA65_RS02800 at 603.932 kb on + strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.964 kb on + strand at 603.964 kb on + strand at 603.964 kb on + strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.986 kb on - strand at 603.992 kb on - strand at 604.006 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.012 kb on - strand at 604.012 kb on - strand at 604.056 kb on + strand at 604.056 kb on + strand at 604.057 kb on - strand at 604.094 kb on + strand at 604.094 kb on + strand at 604.095 kb on - strand, within DZA65_RS02805 at 604.129 kb on + strand, within DZA65_RS02805 at 604.130 kb on - strand, within DZA65_RS02805 at 604.137 kb on - strand, within DZA65_RS02805 at 604.142 kb on + strand, within DZA65_RS02805 at 604.143 kb on - strand, within DZA65_RS02805 at 604.158 kb on + strand, within DZA65_RS02805 at 604.158 kb on + strand, within DZA65_RS02805 at 604.159 kb on - strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.205 kb on - strand, within DZA65_RS02805 at 604.217 kb on + strand, within DZA65_RS02805 at 604.334 kb on + strand at 604.334 kb on + strand at 604.334 kb on + strand at 604.334 kb on + strand at 604.335 kb on - strand at 604.335 kb on - strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.361 kb on + strand at 604.362 kb on - strand at 604.378 kb on + strand at 604.418 kb on + strand at 604.418 kb on + strand at 604.418 kb on + strand at 604.419 kb on - strand at 604.419 kb on - strand at 604.429 kb on + strand at 604.430 kb on - strand at 604.436 kb on + strand at 604.437 kb on - strand at 604.479 kb on + strand, within DZA65_RS02810 at 604.584 kb on + strand, within DZA65_RS02810 at 604.584 kb on + strand, within DZA65_RS02810 at 604.674 kb on + strand at 604.675 kb on - strand at 604.751 kb on - strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.800 kb on + strand at 604.800 kb on + strand at 604.801 kb on - strand at 604.825 kb on + strand at 604.850 kb on + strand at 604.850 kb on + strand at 604.850 kb on + strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.937 kb on - strand at 604.937 kb on - strand at 604.989 kb on + strand at 604.990 kb on - strand at 604.990 kb on - strand at 605.073 kb on - strand at 605.091 kb on + strand at 605.092 kb on - strand at 605.113 kb on + strand at 605.113 kb on + strand at 605.114 kb on - strand at 605.114 kb on - strand at 605.114 kb on - strand at 605.114 kb on - strand at 605.145 kb on - strand at 605.162 kb on + strand at 605.163 kb on - strand at 605.163 kb on - strand at 605.207 kb on + strand at 605.207 kb on + strand at 605.208 kb on - strand at 605.208 kb on - strand at 605.263 kb on + strand at 605.263 kb on + strand at 605.264 kb on - strand at 605.405 kb on + strand at 605.438 kb on + strand at 605.438 kb on + strand at 605.438 kb on + strand at 605.457 kb on - strand at 605.512 kb on + strand at 605.513 kb on - strand at 605.513 kb on - strand at 605.561 kb on + strand at 605.561 kb on + strand at 605.561 kb on + strand at 605.561 kb on + strand at 605.561 kb on + strand at 605.562 kb on - strand at 605.562 kb on - strand at 605.582 kb on + strand at 605.582 kb on + strand at 605.583 kb on - strand at 605.583 kb on - strand at 605.583 kb on - strand at 605.583 kb on - strand at 605.616 kb on + strand at 605.617 kb on - strand at 605.617 kb on - strand at 605.617 kb on - strand at 605.653 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 603,450 - -1.7 603,506 - -2.0 603,527 - +0.1 603,527 - +0.2 603,616 - -1.2 603,636 + +0.2 603,637 - +0.3 603,686 - -0.4 603,687 + -0.4 603,688 - -1.2 603,770 - DZA65_RS02800 0.27 -0.9 603,772 - DZA65_RS02800 0.28 +1.6 603,793 + DZA65_RS02800 0.36 -0.4 603,793 + DZA65_RS02800 0.36 -2.1 603,839 + DZA65_RS02800 0.53 +0.5 603,839 + DZA65_RS02800 0.53 +0.9 603,840 - DZA65_RS02800 0.53 -1.5 603,840 - DZA65_RS02800 0.53 -0.8 603,860 + DZA65_RS02800 0.61 -2.7 603,900 - DZA65_RS02800 0.76 -1.4 603,900 - DZA65_RS02800 0.76 +0.1 603,932 + DZA65_RS02800 0.88 +0.1 603,933 - DZA65_RS02800 0.88 +0.9 603,933 - DZA65_RS02800 0.88 -0.9 603,933 - DZA65_RS02800 0.88 +0.9 603,964 + +0.3 603,964 + -1.3 603,964 + +0.2 603,965 - +0.1 603,965 - -0.9 603,965 - -1.7 603,965 - -1.4 603,965 - -0.8 603,986 - +1.6 603,992 - -1.0 604,006 + +0.7 604,011 + -0.2 604,011 + +0.6 604,011 + -0.1 604,011 + -0.6 604,011 + -0.8 604,012 - +0.4 604,012 - -0.9 604,056 + -0.4 604,056 + -0.9 604,057 - +1.2 604,094 + +0.2 604,094 + +0.3 604,095 - DZA65_RS02805 0.10 -1.5 604,129 + DZA65_RS02805 0.23 -0.8 604,130 - DZA65_RS02805 0.23 +0.0 604,137 - DZA65_RS02805 0.26 -1.2 604,142 + DZA65_RS02805 0.28 -1.7 604,143 - DZA65_RS02805 0.28 -0.1 604,158 + DZA65_RS02805 0.34 -0.5 604,158 + DZA65_RS02805 0.34 -0.2 604,159 - DZA65_RS02805 0.34 -0.9 604,204 + DZA65_RS02805 0.52 +0.8 604,204 + DZA65_RS02805 0.52 -1.1 604,204 + DZA65_RS02805 0.52 -1.8 604,204 + DZA65_RS02805 0.52 +0.9 604,204 + -0.4 604,204 + DZA65_RS02805 0.52 -2.0 604,204 + DZA65_RS02805 0.52 -1.2 604,204 + DZA65_RS02805 0.52 -0.4 604,205 - DZA65_RS02805 0.52 -0.6 604,217 + DZA65_RS02805 0.57 -0.4 604,334 + -1.5 604,334 + +1.2 604,334 + +0.8 604,334 + +0.1 604,335 - +1.6 604,335 - -0.7 604,351 + +0.1 604,351 + +1.6 604,351 + +0.3 604,351 + +0.6 604,351 + -0.4 604,351 + +1.0 604,351 + -2.1 604,352 - -0.3 604,352 - -0.4 604,352 - +0.3 604,352 - +1.5 604,352 - -0.7 604,352 - +0.1 604,361 + -0.2 604,362 - -0.4 604,378 + -0.4 604,418 + -1.0 604,418 + +0.6 604,418 + +0.3 604,419 - +0.7 604,419 - -2.1 604,429 + -0.1 604,430 - +0.5 604,436 + -0.1 604,437 - -1.7 604,479 + DZA65_RS02810 0.13 -1.7 604,584 + DZA65_RS02810 0.60 -0.5 604,584 + DZA65_RS02810 0.60 -1.0 604,674 + +0.6 604,675 - +0.1 604,751 - -2.3 604,797 + +0.8 604,797 + +2.6 604,797 + -0.7 604,797 + +0.2 604,798 - -1.4 604,798 - -0.2 604,798 - -0.8 604,798 - +1.6 604,798 - +0.4 604,800 + -1.5 604,800 + +1.6 604,801 - -0.4 604,825 + -0.9 604,850 + -0.4 604,850 + +0.5 604,850 + +0.1 604,851 - -0.2 604,851 - +0.1 604,851 - -2.1 604,851 - +0.1 604,851 - -1.3 604,851 - +0.2 604,851 - -0.1 604,851 - -1.4 604,865 + -1.2 604,865 + +1.3 604,865 + -0.4 604,865 + -1.8 604,937 - +0.6 604,937 - -0.6 604,989 + -2.4 604,990 - +1.4 604,990 - -0.7 605,073 - -0.7 605,091 + +0.3 605,092 - -0.3 605,113 + +1.6 605,113 + -0.9 605,114 - +1.9 605,114 - +0.1 605,114 - +0.5 605,114 - -0.2 605,145 - -2.1 605,162 + -0.8 605,163 - +0.3 605,163 - -0.9 605,207 + -1.0 605,207 + +0.6 605,208 - -0.6 605,208 - -1.7 605,263 + -1.6 605,263 + +0.4 605,264 - -0.2 605,405 + -1.7 605,438 + +1.1 605,438 + -0.7 605,438 + +0.1 605,457 - -0.7 605,512 + -1.0 605,513 - -1.1 605,513 - -1.0 605,561 + -0.1 605,561 + +2.0 605,561 + +2.6 605,561 + +0.1 605,561 + +1.1 605,562 - -1.0 605,562 - -0.4 605,582 + -0.4 605,582 + -0.8 605,583 - -2.4 605,583 - +0.9 605,583 - -0.2 605,583 - +0.7 605,616 + -0.4 605,617 - -0.9 605,617 - +0.3 605,617 - -1.4 605,653 - -0.7
Or see this region's nucleotide sequence