Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02535 and DZA65_RS02540 are separated by 402 nucleotides DZA65_RS02540 and DZA65_RS02545 are separated by 31 nucleotides DZA65_RS02545 and DZA65_RS02550 are separated by 278 nucleotides
DZA65_RS02535: DZA65_RS02535 - HAMP domain-containing protein, at 544,640 to 546,346
_RS02535
DZA65_RS02540: DZA65_RS02540 - amidohydrolase, at 546,749 to 547,918
_RS02540
DZA65_RS02545: DZA65_RS02545 - hypothetical protein, at 547,950 to 548,207
_RS02545
DZA65_RS02550: DZA65_RS02550 - ABC transporter ATP-binding protein, at 548,486 to 549,301
_RS02550
Position (kb) 546
547
548 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 546.010 kb on + strand, within DZA65_RS02535 at 546.085 kb on + strand, within DZA65_RS02535 at 546.086 kb on - strand, within DZA65_RS02535 at 546.086 kb on - strand, within DZA65_RS02535 at 546.110 kb on - strand, within DZA65_RS02535 at 546.226 kb on + strand at 546.227 kb on - strand at 546.313 kb on + strand at 546.314 kb on - strand at 546.377 kb on - strand at 546.427 kb on + strand at 546.462 kb on - strand at 546.495 kb on + strand at 546.527 kb on + strand at 546.527 kb on + strand at 546.527 kb on + strand at 546.529 kb on + strand at 546.529 kb on + strand at 546.529 kb on + strand at 546.530 kb on - strand at 546.533 kb on - strand at 546.541 kb on + strand at 546.541 kb on + strand at 546.541 kb on + strand at 546.542 kb on - strand at 546.542 kb on - strand at 546.542 kb on - strand at 546.542 kb on - strand at 546.543 kb on + strand at 546.543 kb on + strand at 546.544 kb on - strand at 546.544 kb on - strand at 546.544 kb on - strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.587 kb on + strand at 546.588 kb on - strand at 546.588 kb on - strand at 546.588 kb on - strand at 546.588 kb on - strand at 546.588 kb on - strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.602 kb on + strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.603 kb on - strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.616 kb on + strand at 546.617 kb on - strand at 546.617 kb on - strand at 546.617 kb on - strand at 546.617 kb on - strand at 546.617 kb on - strand at 546.640 kb on - strand at 546.647 kb on + strand at 546.648 kb on - strand at 546.648 kb on - strand at 546.772 kb on + strand at 546.772 kb on + strand at 546.773 kb on - strand at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.030 kb on + strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.031 kb on - strand, within DZA65_RS02540 at 547.119 kb on + strand, within DZA65_RS02540 at 547.119 kb on + strand, within DZA65_RS02540 at 547.119 kb on + strand, within DZA65_RS02540 at 547.119 kb on + strand, within DZA65_RS02540 at 547.119 kb on + strand, within DZA65_RS02540 at 547.120 kb on - strand, within DZA65_RS02540 at 547.210 kb on + strand, within DZA65_RS02540 at 547.210 kb on + strand, within DZA65_RS02540 at 547.210 kb on + strand, within DZA65_RS02540 at 547.210 kb on + strand, within DZA65_RS02540 at 547.210 kb on + strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.211 kb on - strand, within DZA65_RS02540 at 547.215 kb on - strand, within DZA65_RS02540 at 547.215 kb on - strand, within DZA65_RS02540 at 547.215 kb on - strand, within DZA65_RS02540 at 547.215 kb on - strand, within DZA65_RS02540 at 547.303 kb on + strand, within DZA65_RS02540 at 547.304 kb on - strand, within DZA65_RS02540 at 547.389 kb on + strand, within DZA65_RS02540 at 547.400 kb on - strand, within DZA65_RS02540 at 547.441 kb on + strand, within DZA65_RS02540 at 547.442 kb on - strand, within DZA65_RS02540 at 547.492 kb on + strand, within DZA65_RS02540 at 547.492 kb on + strand, within DZA65_RS02540 at 547.492 kb on + strand, within DZA65_RS02540 at 547.493 kb on - strand, within DZA65_RS02540 at 547.493 kb on - strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.562 kb on + strand, within DZA65_RS02540 at 547.563 kb on - strand, within DZA65_RS02540 at 547.563 kb on - strand, within DZA65_RS02540 at 547.563 kb on - strand, within DZA65_RS02540 at 547.563 kb on - strand, within DZA65_RS02540 at 547.594 kb on - strand at 547.594 kb on - strand, within DZA65_RS02540 at 547.745 kb on + strand, within DZA65_RS02540 at 547.745 kb on + strand, within DZA65_RS02540 at 547.745 kb on + strand, within DZA65_RS02540 at 547.745 kb on + strand, within DZA65_RS02540 at 547.746 kb on - strand at 547.752 kb on + strand, within DZA65_RS02540 at 547.752 kb on + strand, within DZA65_RS02540 at 547.753 kb on - strand, within DZA65_RS02540 at 547.753 kb on - strand, within DZA65_RS02540 at 547.753 kb on - strand, within DZA65_RS02540 at 547.773 kb on - strand, within DZA65_RS02540 at 547.829 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.947 kb on + strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 547.948 kb on - strand at 548.221 kb on + strand at 548.222 kb on - strand at 548.222 kb on - strand at 548.222 kb on - strand at 548.222 kb on - strand at 548.250 kb on + strand at 548.250 kb on + strand at 548.250 kb on + strand at 548.250 kb on + strand at 548.250 kb on + strand at 548.251 kb on - strand at 548.251 kb on - strand at 548.251 kb on - strand at 548.251 kb on - strand at 548.272 kb on + strand at 548.284 kb on + strand at 548.288 kb on - strand at 548.302 kb on - strand at 548.303 kb on + strand at 548.304 kb on - strand at 548.351 kb on + strand at 548.351 kb on + strand at 548.352 kb on - strand at 548.352 kb on - strand at 548.352 kb on - strand at 548.360 kb on + strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.389 kb on - strand at 548.415 kb on - strand at 548.428 kb on - strand at 548.428 kb on - strand at 548.508 kb on + strand at 548.509 kb on - strand at 548.517 kb on + strand at 548.517 kb on + strand at 548.517 kb on + strand at 548.560 kb on + strand at 548.561 kb on - strand at 548.561 kb on - strand at 548.575 kb on + strand, within DZA65_RS02550 at 548.576 kb on - strand, within DZA65_RS02550 at 548.695 kb on + strand, within DZA65_RS02550 at 548.695 kb on + strand, within DZA65_RS02550 at 548.696 kb on - strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.792 kb on + strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.793 kb on - strand, within DZA65_RS02550 at 548.796 kb on + strand, within DZA65_RS02550
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 546,010 + DZA65_RS02535 0.80 -0.1 546,085 + DZA65_RS02535 0.85 -1.7 546,086 - DZA65_RS02535 0.85 +0.1 546,086 - DZA65_RS02535 0.85 +1.1 546,110 - DZA65_RS02535 0.86 +0.3 546,226 + +0.2 546,227 - -0.7 546,313 + -1.6 546,314 - -0.8 546,377 - +0.2 546,427 + -1.0 546,462 - -1.0 546,495 + -1.9 546,527 + -0.6 546,527 + -0.7 546,527 + +1.0 546,529 + -0.7 546,529 + +0.7 546,529 + -0.2 546,530 - -1.0 546,533 - +1.6 546,541 + -0.7 546,541 + -0.8 546,541 + -1.2 546,542 - +0.3 546,542 - -0.2 546,542 - -2.1 546,542 - -0.9 546,543 + +0.2 546,543 + -0.6 546,544 - -1.1 546,544 - +2.0 546,544 - -1.0 546,587 + +0.3 546,587 + -0.6 546,587 + +1.6 546,587 + -1.0 546,587 + -1.0 546,587 + -2.1 546,587 + -1.7 546,587 + -0.7 546,587 + -0.7 546,587 + -1.8 546,588 - -0.6 546,588 - -0.2 546,588 - -0.8 546,588 - +0.6 546,588 - +0.3 546,602 + -1.4 546,602 + -0.5 546,602 + -0.2 546,602 + +0.2 546,602 + -0.4 546,602 + +0.6 546,602 + -0.0 546,602 + -1.0 546,602 + -0.7 546,602 + +0.1 546,602 + -1.8 546,602 + -1.7 546,603 - +0.2 546,603 - +0.0 546,603 - +1.2 546,603 - -0.5 546,603 - +0.2 546,603 - -0.4 546,603 - -0.7 546,603 - -0.4 546,616 + +0.6 546,616 + -2.1 546,616 + -1.0 546,616 + +0.5 546,616 + +0.6 546,616 + +0.8 546,616 + -0.9 546,616 + -1.1 546,616 + -1.0 546,616 + +0.5 546,616 + -0.7 546,617 - -2.8 546,617 - +0.0 546,617 - -0.7 546,617 - -0.1 546,617 - -0.7 546,640 - -1.1 546,647 + -0.7 546,648 - -1.4 546,648 - +0.5 546,772 + -0.2 546,772 + +0.6 546,773 - +0.0 547,030 + DZA65_RS02540 0.24 +3.0 547,030 + DZA65_RS02540 0.24 -0.5 547,030 + DZA65_RS02540 0.24 +0.4 547,030 + DZA65_RS02540 0.24 +0.4 547,030 + DZA65_RS02540 0.24 -0.2 547,030 + +2.2 547,030 + DZA65_RS02540 0.24 +1.6 547,030 + DZA65_RS02540 0.24 -1.1 547,030 + DZA65_RS02540 0.24 -1.1 547,030 + DZA65_RS02540 0.24 -0.1 547,030 + DZA65_RS02540 0.24 -2.8 547,031 - DZA65_RS02540 0.24 +0.0 547,031 - DZA65_RS02540 0.24 +0.9 547,031 - DZA65_RS02540 0.24 +0.8 547,031 - DZA65_RS02540 0.24 -0.4 547,031 - DZA65_RS02540 0.24 +1.4 547,031 - DZA65_RS02540 0.24 -0.7 547,031 - DZA65_RS02540 0.24 +0.0 547,031 - DZA65_RS02540 0.24 +0.0 547,031 - DZA65_RS02540 0.24 -0.2 547,119 + DZA65_RS02540 0.32 -0.7 547,119 + DZA65_RS02540 0.32 -1.0 547,119 + DZA65_RS02540 0.32 +0.2 547,119 + DZA65_RS02540 0.32 -0.7 547,119 + DZA65_RS02540 0.32 -0.1 547,120 - DZA65_RS02540 0.32 -1.1 547,210 + DZA65_RS02540 0.39 +1.4 547,210 + DZA65_RS02540 0.39 -1.2 547,210 + DZA65_RS02540 0.39 -1.8 547,210 + DZA65_RS02540 0.39 +0.2 547,210 + DZA65_RS02540 0.39 +0.3 547,211 - DZA65_RS02540 0.39 -0.3 547,211 - DZA65_RS02540 0.39 -0.5 547,211 - DZA65_RS02540 0.39 +0.2 547,211 - DZA65_RS02540 0.39 -0.8 547,211 - DZA65_RS02540 0.39 -1.0 547,211 - DZA65_RS02540 0.39 +1.1 547,211 - DZA65_RS02540 0.39 -2.1 547,215 - DZA65_RS02540 0.40 -0.0 547,215 - DZA65_RS02540 0.40 +0.5 547,215 - DZA65_RS02540 0.40 +0.6 547,215 - DZA65_RS02540 0.40 -1.7 547,303 + DZA65_RS02540 0.47 +0.4 547,304 - DZA65_RS02540 0.47 -0.0 547,389 + DZA65_RS02540 0.55 +0.9 547,400 - DZA65_RS02540 0.56 -0.1 547,441 + DZA65_RS02540 0.59 -1.1 547,442 - DZA65_RS02540 0.59 -0.4 547,492 + DZA65_RS02540 0.64 +0.2 547,492 + DZA65_RS02540 0.64 -0.4 547,492 + DZA65_RS02540 0.64 -1.0 547,493 - DZA65_RS02540 0.64 +0.5 547,493 - DZA65_RS02540 0.64 -1.5 547,562 + DZA65_RS02540 0.69 -1.3 547,562 + DZA65_RS02540 0.69 -1.1 547,562 + DZA65_RS02540 0.69 +0.9 547,562 + DZA65_RS02540 0.69 +0.6 547,562 + DZA65_RS02540 0.69 -0.4 547,562 + DZA65_RS02540 0.69 -1.1 547,562 + DZA65_RS02540 0.69 -0.8 547,562 + DZA65_RS02540 0.69 +1.6 547,562 + DZA65_RS02540 0.69 +1.1 547,563 - DZA65_RS02540 0.70 +1.0 547,563 - DZA65_RS02540 0.70 +0.5 547,563 - DZA65_RS02540 0.70 -1.4 547,563 - DZA65_RS02540 0.70 -0.7 547,594 - +0.3 547,594 - DZA65_RS02540 0.72 +0.7 547,745 + DZA65_RS02540 0.85 +0.6 547,745 + DZA65_RS02540 0.85 -1.2 547,745 + DZA65_RS02540 0.85 -1.2 547,745 + DZA65_RS02540 0.85 -0.9 547,746 - -0.4 547,752 + DZA65_RS02540 0.86 -1.5 547,752 + DZA65_RS02540 0.86 -0.1 547,753 - DZA65_RS02540 0.86 -0.4 547,753 - DZA65_RS02540 0.86 +0.8 547,753 - DZA65_RS02540 0.86 -0.5 547,773 - DZA65_RS02540 0.88 -1.1 547,829 + -1.2 547,947 + -0.4 547,947 + +0.6 547,947 + +1.3 547,947 + -0.2 547,947 + +1.0 547,947 + +0.6 547,947 + -0.7 547,947 + +1.6 547,948 - -1.0 547,948 - +0.6 547,948 - -0.6 547,948 - -0.7 547,948 - +0.0 547,948 - +1.0 547,948 - +0.1 547,948 - -1.1 547,948 - -1.0 547,948 - +1.0 547,948 - -1.4 547,948 - +0.6 547,948 - +1.1 548,221 + -0.2 548,222 - +0.1 548,222 - +0.9 548,222 - +0.6 548,222 - -0.6 548,250 + +0.4 548,250 + +0.1 548,250 + -1.4 548,250 + -0.5 548,250 + -0.7 548,251 - +0.1 548,251 - -0.0 548,251 - +0.6 548,251 - +0.3 548,272 + +0.1 548,284 + -1.8 548,288 - -1.4 548,302 - +1.0 548,303 + +1.3 548,304 - +0.1 548,351 + +0.3 548,351 + -0.1 548,352 - +0.5 548,352 - -0.2 548,352 - -0.4 548,360 + +1.0 548,361 - -0.0 548,361 - -0.4 548,361 - -1.4 548,361 - +0.1 548,361 - -0.2 548,389 - -1.9 548,415 - -0.4 548,428 - -0.7 548,428 - -1.0 548,508 + +0.3 548,509 - +1.1 548,517 + -0.4 548,517 + -0.9 548,517 + +0.8 548,560 + +0.3 548,561 - +0.5 548,561 - -0.6 548,575 + DZA65_RS02550 0.11 -0.9 548,576 - DZA65_RS02550 0.11 -0.7 548,695 + DZA65_RS02550 0.26 -0.6 548,695 + DZA65_RS02550 0.26 +0.1 548,696 - DZA65_RS02550 0.26 +0.2 548,792 + DZA65_RS02550 0.38 -1.4 548,792 + DZA65_RS02550 0.38 +1.1 548,792 + DZA65_RS02550 0.38 -0.4 548,792 + DZA65_RS02550 0.38 -0.7 548,792 + DZA65_RS02550 0.38 -0.7 548,792 + DZA65_RS02550 0.38 -1.2 548,792 + DZA65_RS02550 0.38 +0.8 548,792 + DZA65_RS02550 0.38 -1.1 548,792 + DZA65_RS02550 0.38 -0.4 548,792 + DZA65_RS02550 0.38 +0.2 548,793 - DZA65_RS02550 0.38 -1.4 548,793 - DZA65_RS02550 0.38 -0.8 548,793 - DZA65_RS02550 0.38 +0.3 548,793 - DZA65_RS02550 0.38 -0.2 548,793 - DZA65_RS02550 0.38 -1.2 548,793 - DZA65_RS02550 0.38 -2.7 548,793 - DZA65_RS02550 0.38 -1.5 548,793 - DZA65_RS02550 0.38 -0.6 548,796 + DZA65_RS02550 0.38 -1.4
Or see this region's nucleotide sequence