Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02340 and DZA65_RS02350 are separated by 396 nucleotides DZA65_RS02350 and DZA65_RS02355 are separated by 245 nucleotides
DZA65_RS02340: DZA65_RS02340 - M20 family metallopeptidase, at 505,277 to 506,695
_RS02340
DZA65_RS02350: DZA65_RS02350 - LysR family transcriptional regulator, at 507,092 to 508,024
_RS02350
DZA65_RS02355: DZA65_RS02355 - 1-aminocyclopropane-1-carboxylate deaminase, at 508,270 to 509,286
_RS02355
Position (kb) 507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.171 kb on + strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.172 kb on - strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.273 kb on + strand, within DZA65_RS02340 at 506.274 kb on - strand, within DZA65_RS02340 at 506.431 kb on + strand, within DZA65_RS02340 at 506.432 kb on - strand, within DZA65_RS02340 at 506.467 kb on - strand, within DZA65_RS02340 at 506.572 kb on + strand at 506.708 kb on + strand at 506.708 kb on + strand at 506.709 kb on - strand at 506.718 kb on + strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.719 kb on - strand at 506.747 kb on + strand at 506.747 kb on + strand at 506.747 kb on + strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.748 kb on - strand at 506.758 kb on + strand at 506.758 kb on + strand at 506.758 kb on + strand at 506.759 kb on - strand at 506.759 kb on - strand at 506.759 kb on - strand at 506.848 kb on + strand at 506.853 kb on + strand at 506.979 kb on + strand at 506.979 kb on + strand at 506.979 kb on + strand at 506.979 kb on + strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.980 kb on - strand at 506.986 kb on - strand at 507.075 kb on + strand at 507.075 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.086 kb on + strand at 507.087 kb on - strand at 507.087 kb on - strand at 507.087 kb on - strand at 507.097 kb on + strand at 507.097 kb on + strand at 507.097 kb on + strand at 507.098 kb on - strand at 507.098 kb on - strand at 507.118 kb on + strand at 507.118 kb on + strand at 507.118 kb on + strand at 507.119 kb on - strand at 507.119 kb on - strand at 507.119 kb on - strand at 507.134 kb on - strand at 507.277 kb on + strand, within DZA65_RS02350 at 507.277 kb on + strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.278 kb on - strand, within DZA65_RS02350 at 507.304 kb on + strand, within DZA65_RS02350 at 507.458 kb on + strand, within DZA65_RS02350 at 507.596 kb on - strand, within DZA65_RS02350 at 507.730 kb on + strand, within DZA65_RS02350 at 507.731 kb on - strand, within DZA65_RS02350 at 507.770 kb on + strand, within DZA65_RS02350 at 507.770 kb on + strand, within DZA65_RS02350 at 507.770 kb on + strand, within DZA65_RS02350 at 507.770 kb on + strand, within DZA65_RS02350 at 507.770 kb on + strand, within DZA65_RS02350 at 507.771 kb on - strand, within DZA65_RS02350 at 507.771 kb on - strand, within DZA65_RS02350 at 507.771 kb on - strand, within DZA65_RS02350 at 507.771 kb on - strand, within DZA65_RS02350 at 507.771 kb on - strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.776 kb on + strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.777 kb on - strand, within DZA65_RS02350 at 507.811 kb on + strand, within DZA65_RS02350 at 507.811 kb on + strand, within DZA65_RS02350 at 507.811 kb on + strand, within DZA65_RS02350 at 507.811 kb on + strand, within DZA65_RS02350 at 507.812 kb on - strand, within DZA65_RS02350 at 507.812 kb on - strand, within DZA65_RS02350 at 507.892 kb on + strand, within DZA65_RS02350 at 507.892 kb on + strand, within DZA65_RS02350 at 507.892 kb on + strand, within DZA65_RS02350 at 507.893 kb on - strand, within DZA65_RS02350 at 507.893 kb on - strand, within DZA65_RS02350 at 507.980 kb on + strand at 507.980 kb on + strand at 507.980 kb on + strand at 507.980 kb on + strand at 507.981 kb on - strand at 507.981 kb on - strand at 507.981 kb on - strand at 507.981 kb on - strand at 507.981 kb on - strand at 508.039 kb on - strand at 508.177 kb on - strand at 508.179 kb on + strand at 508.179 kb on + strand at 508.179 kb on + strand at 508.179 kb on + strand at 508.179 kb on + strand at 508.180 kb on - strand at 508.249 kb on + strand at 508.249 kb on + strand at 508.249 kb on + strand at 508.249 kb on + strand at 508.249 kb on + strand at 508.249 kb on + strand at 508.250 kb on - strand at 508.250 kb on - strand at 508.253 kb on + strand at 508.302 kb on - strand at 508.302 kb on - strand at 508.348 kb on + strand at 508.348 kb on + strand at 508.349 kb on - strand at 508.349 kb on - strand at 508.372 kb on + strand, within DZA65_RS02355 at 508.372 kb on + strand, within DZA65_RS02355 at 508.439 kb on - strand, within DZA65_RS02355 at 508.554 kb on + strand, within DZA65_RS02355 at 508.554 kb on + strand, within DZA65_RS02355 at 508.554 kb on + strand, within DZA65_RS02355 at 508.555 kb on - strand, within DZA65_RS02355 at 508.555 kb on - strand, within DZA65_RS02355 at 508.555 kb on - strand, within DZA65_RS02355 at 508.555 kb on - strand, within DZA65_RS02355 at 508.582 kb on + strand, within DZA65_RS02355 at 508.582 kb on + strand, within DZA65_RS02355 at 508.582 kb on + strand, within DZA65_RS02355 at 508.583 kb on - strand, within DZA65_RS02355 at 508.583 kb on - strand, within DZA65_RS02355 at 508.597 kb on + strand, within DZA65_RS02355 at 508.598 kb on - strand, within DZA65_RS02355 at 508.633 kb on - strand, within DZA65_RS02355 at 508.805 kb on + strand, within DZA65_RS02355 at 508.805 kb on + strand, within DZA65_RS02355 at 508.805 kb on + strand, within DZA65_RS02355 at 508.806 kb on - strand, within DZA65_RS02355 at 508.806 kb on - strand, within DZA65_RS02355 at 508.806 kb on - strand, within DZA65_RS02355 at 508.806 kb on - strand, within DZA65_RS02355 at 508.833 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.843 kb on + strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.844 kb on - strand, within DZA65_RS02355 at 508.845 kb on + strand, within DZA65_RS02355 at 508.845 kb on + strand, within DZA65_RS02355 at 508.845 kb on + strand, within DZA65_RS02355 at 508.845 kb on + strand, within DZA65_RS02355 at 508.846 kb on - strand, within DZA65_RS02355 at 508.846 kb on - strand, within DZA65_RS02355 at 508.846 kb on - strand, within DZA65_RS02355 at 508.846 kb on - strand, within DZA65_RS02355 at 508.873 kb on - strand, within DZA65_RS02355
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 506,171 + DZA65_RS02340 0.63 -0.9 506,171 + DZA65_RS02340 0.63 +0.9 506,171 + DZA65_RS02340 0.63 -0.2 506,171 + DZA65_RS02340 0.63 -2.2 506,171 + DZA65_RS02340 0.63 -1.2 506,171 + DZA65_RS02340 0.63 +0.6 506,171 + DZA65_RS02340 0.63 -1.8 506,171 + DZA65_RS02340 0.63 -1.4 506,171 + DZA65_RS02340 0.63 -1.4 506,171 + DZA65_RS02340 0.63 +0.1 506,172 - DZA65_RS02340 0.63 -1.8 506,172 - DZA65_RS02340 0.63 -0.7 506,172 - DZA65_RS02340 0.63 +1.3 506,172 - DZA65_RS02340 0.63 +1.1 506,172 - DZA65_RS02340 0.63 +0.3 506,172 - DZA65_RS02340 0.63 -0.0 506,172 - DZA65_RS02340 0.63 +1.2 506,273 + DZA65_RS02340 0.70 +0.3 506,273 + DZA65_RS02340 0.70 -1.3 506,273 + DZA65_RS02340 0.70 -0.8 506,273 + DZA65_RS02340 0.70 -0.1 506,273 + DZA65_RS02340 0.70 +0.4 506,274 - DZA65_RS02340 0.70 -0.1 506,431 + DZA65_RS02340 0.81 +0.8 506,432 - DZA65_RS02340 0.81 -0.2 506,467 - DZA65_RS02340 0.84 +0.1 506,572 + -1.1 506,708 + +0.9 506,708 + -0.1 506,709 - -0.6 506,718 + -0.4 506,719 - -1.3 506,719 - -0.3 506,719 - -0.5 506,719 - -0.6 506,719 - +0.5 506,747 + +1.1 506,747 + -2.1 506,747 + +0.6 506,748 - -2.2 506,748 - +1.1 506,748 - -0.3 506,748 - +0.4 506,748 - -0.1 506,758 + -0.9 506,758 + -0.7 506,758 + +2.2 506,759 - -1.4 506,759 - -1.5 506,759 - -0.2 506,848 + -0.7 506,853 + +0.9 506,979 + +2.1 506,979 + -0.1 506,979 + +0.9 506,979 + +0.2 506,980 - +0.6 506,980 - -0.7 506,980 - -1.4 506,980 - +1.1 506,980 - +0.6 506,980 - -0.7 506,986 - -0.3 507,075 + -0.7 507,075 + -0.7 507,086 + +0.6 507,086 + -0.9 507,086 + -0.7 507,086 + +0.9 507,086 + +0.6 507,087 - -0.7 507,087 - -0.4 507,087 - -0.7 507,097 + -0.2 507,097 + -0.4 507,097 + -0.7 507,098 - -0.9 507,098 - -0.5 507,118 + -0.1 507,118 + -1.2 507,118 + -2.2 507,119 - -1.5 507,119 - +0.3 507,119 - -1.7 507,134 - +0.9 507,277 + DZA65_RS02350 0.20 +0.9 507,277 + DZA65_RS02350 0.20 -0.9 507,278 - DZA65_RS02350 0.20 -0.6 507,278 - DZA65_RS02350 0.20 +0.1 507,278 - DZA65_RS02350 0.20 -1.7 507,278 - DZA65_RS02350 0.20 +0.1 507,278 - DZA65_RS02350 0.20 -0.4 507,304 + DZA65_RS02350 0.23 -0.5 507,458 + DZA65_RS02350 0.39 -0.7 507,596 - DZA65_RS02350 0.54 -0.7 507,730 + DZA65_RS02350 0.68 -0.9 507,731 - DZA65_RS02350 0.68 -0.2 507,770 + DZA65_RS02350 0.73 -1.7 507,770 + DZA65_RS02350 0.73 -2.1 507,770 + DZA65_RS02350 0.73 -0.2 507,770 + DZA65_RS02350 0.73 -0.9 507,770 + DZA65_RS02350 0.73 -0.5 507,771 - DZA65_RS02350 0.73 -1.6 507,771 - DZA65_RS02350 0.73 -0.9 507,771 - DZA65_RS02350 0.73 -0.7 507,771 - DZA65_RS02350 0.73 -1.4 507,771 - DZA65_RS02350 0.73 +1.6 507,776 + DZA65_RS02350 0.73 +0.5 507,776 + DZA65_RS02350 0.73 +0.6 507,776 + DZA65_RS02350 0.73 -0.5 507,776 + DZA65_RS02350 0.73 -0.6 507,776 + DZA65_RS02350 0.73 -2.2 507,776 + DZA65_RS02350 0.73 -2.2 507,776 + DZA65_RS02350 0.73 -1.2 507,776 + DZA65_RS02350 0.73 +0.5 507,776 + DZA65_RS02350 0.73 -0.6 507,776 + DZA65_RS02350 0.73 -1.2 507,777 - DZA65_RS02350 0.73 +0.1 507,777 - DZA65_RS02350 0.73 +0.1 507,777 - DZA65_RS02350 0.73 -1.0 507,777 - DZA65_RS02350 0.73 -0.6 507,777 - DZA65_RS02350 0.73 +0.4 507,777 - DZA65_RS02350 0.73 -0.7 507,777 - DZA65_RS02350 0.73 -0.7 507,777 - DZA65_RS02350 0.73 -1.8 507,777 - DZA65_RS02350 0.73 -0.7 507,777 - DZA65_RS02350 0.73 -0.9 507,777 - DZA65_RS02350 0.73 -0.4 507,777 - DZA65_RS02350 0.73 +0.1 507,777 - DZA65_RS02350 0.73 -0.7 507,777 - DZA65_RS02350 0.73 -0.0 507,777 - DZA65_RS02350 0.73 -1.2 507,811 + DZA65_RS02350 0.77 -0.5 507,811 + DZA65_RS02350 0.77 +0.2 507,811 + DZA65_RS02350 0.77 +1.6 507,811 + DZA65_RS02350 0.77 -0.5 507,812 - DZA65_RS02350 0.77 +0.1 507,812 - DZA65_RS02350 0.77 +0.0 507,892 + DZA65_RS02350 0.86 -1.4 507,892 + DZA65_RS02350 0.86 -0.4 507,892 + DZA65_RS02350 0.86 -0.3 507,893 - DZA65_RS02350 0.86 -2.1 507,893 - DZA65_RS02350 0.86 -1.4 507,980 + -0.8 507,980 + -0.4 507,980 + -0.2 507,980 + -1.9 507,981 - +0.2 507,981 - -1.1 507,981 - +0.6 507,981 - -1.2 507,981 - +0.9 508,039 - +0.3 508,177 - -0.5 508,179 + -1.9 508,179 + +0.6 508,179 + -2.8 508,179 + -0.3 508,179 + +0.1 508,180 - -0.4 508,249 + +1.1 508,249 + -0.5 508,249 + +0.5 508,249 + -1.1 508,249 + -0.1 508,249 + -0.9 508,250 - -1.2 508,250 - -0.1 508,253 + +0.2 508,302 - -1.6 508,302 - -0.7 508,348 + -2.7 508,348 + +0.4 508,349 - -1.2 508,349 - +1.1 508,372 + DZA65_RS02355 0.10 -0.7 508,372 + DZA65_RS02355 0.10 -0.9 508,439 - DZA65_RS02355 0.17 -1.2 508,554 + DZA65_RS02355 0.28 -0.5 508,554 + DZA65_RS02355 0.28 -1.6 508,554 + DZA65_RS02355 0.28 +1.2 508,555 - DZA65_RS02355 0.28 +1.6 508,555 - DZA65_RS02355 0.28 -2.1 508,555 - DZA65_RS02355 0.28 +1.1 508,555 - DZA65_RS02355 0.28 -2.1 508,582 + DZA65_RS02355 0.31 -0.7 508,582 + DZA65_RS02355 0.31 +1.6 508,582 + DZA65_RS02355 0.31 +0.4 508,583 - DZA65_RS02355 0.31 -0.9 508,583 - DZA65_RS02355 0.31 -1.5 508,597 + DZA65_RS02355 0.32 -0.5 508,598 - DZA65_RS02355 0.32 -1.5 508,633 - DZA65_RS02355 0.36 +1.9 508,805 + DZA65_RS02355 0.53 -1.4 508,805 + DZA65_RS02355 0.53 -0.9 508,805 + DZA65_RS02355 0.53 +0.9 508,806 - DZA65_RS02355 0.53 -1.4 508,806 - DZA65_RS02355 0.53 -0.5 508,806 - DZA65_RS02355 0.53 +0.1 508,806 - DZA65_RS02355 0.53 +0.4 508,833 + DZA65_RS02355 0.55 -0.2 508,843 + DZA65_RS02355 0.56 +0.6 508,843 + DZA65_RS02355 0.56 +0.9 508,843 + DZA65_RS02355 0.56 -0.1 508,843 + DZA65_RS02355 0.56 -0.4 508,843 + DZA65_RS02355 0.56 -1.2 508,843 + DZA65_RS02355 0.56 -1.7 508,843 + DZA65_RS02355 0.56 -1.5 508,843 + DZA65_RS02355 0.56 -0.3 508,844 - DZA65_RS02355 0.56 +0.1 508,844 - DZA65_RS02355 0.56 +0.6 508,844 - DZA65_RS02355 0.56 -0.5 508,844 - DZA65_RS02355 0.56 +0.1 508,844 - DZA65_RS02355 0.56 +1.3 508,844 - DZA65_RS02355 0.56 -1.8 508,844 - DZA65_RS02355 0.56 +0.1 508,844 - DZA65_RS02355 0.56 -1.3 508,844 - DZA65_RS02355 0.56 -0.3 508,844 - DZA65_RS02355 0.56 +0.9 508,844 - DZA65_RS02355 0.56 +0.1 508,844 - DZA65_RS02355 0.56 +2.0 508,844 - DZA65_RS02355 0.56 -2.3 508,844 - DZA65_RS02355 0.56 +0.6 508,844 - DZA65_RS02355 0.56 -0.5 508,844 - DZA65_RS02355 0.56 -0.0 508,844 - DZA65_RS02355 0.56 -0.6 508,845 + DZA65_RS02355 0.57 -1.7 508,845 + DZA65_RS02355 0.57 +0.1 508,845 + DZA65_RS02355 0.57 -0.7 508,845 + DZA65_RS02355 0.57 +0.0 508,846 - DZA65_RS02355 0.57 +0.3 508,846 - DZA65_RS02355 0.57 -0.6 508,846 - DZA65_RS02355 0.57 +0.6 508,846 - DZA65_RS02355 0.57 -1.1 508,873 - DZA65_RS02355 0.59 +0.6
Or see this region's nucleotide sequence