Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02315 and DZA65_RS02320 are separated by 45 nucleotides DZA65_RS02320 and DZA65_RS02325 are separated by 9 nucleotides DZA65_RS02325 and DZA65_RS02330 are separated by 105 nucleotides
DZA65_RS02315: DZA65_RS02315 - ABC transporter substrate-binding protein, at 499,852 to 501,399
_RS02315
DZA65_RS02320: DZA65_RS02320 - ABC transporter permease, at 501,445 to 502,362
_RS02320
DZA65_RS02325: DZA65_RS02325 - ABC transporter permease, at 502,372 to 503,298
_RS02325
DZA65_RS02330: DZA65_RS02330 - ABC transporter ATP-binding protein, at 503,404 to 504,381
_RS02330
Position (kb) 502
503
504 Strain fitness (log2 ratio) -2
-1
0
1
2 at 501.397 kb on + strand at 501.397 kb on + strand at 501.398 kb on - strand at 501.398 kb on - strand at 501.398 kb on - strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.424 kb on + strand at 501.425 kb on - strand at 501.425 kb on - strand at 501.425 kb on - strand at 501.432 kb on - strand at 501.432 kb on - strand at 501.444 kb on + strand at 501.454 kb on + strand at 501.454 kb on + strand at 501.455 kb on - strand at 501.455 kb on - strand at 501.455 kb on - strand at 501.455 kb on - strand at 501.615 kb on + strand, within DZA65_RS02320 at 501.615 kb on + strand, within DZA65_RS02320 at 501.615 kb on + strand, within DZA65_RS02320 at 501.685 kb on + strand, within DZA65_RS02320 at 501.685 kb on + strand, within DZA65_RS02320 at 501.685 kb on + strand, within DZA65_RS02320 at 501.723 kb on + strand, within DZA65_RS02320 at 501.723 kb on + strand, within DZA65_RS02320 at 501.724 kb on - strand, within DZA65_RS02320 at 501.724 kb on - strand, within DZA65_RS02320 at 501.738 kb on + strand, within DZA65_RS02320 at 501.738 kb on + strand, within DZA65_RS02320 at 501.739 kb on - strand, within DZA65_RS02320 at 501.739 kb on - strand, within DZA65_RS02320 at 501.900 kb on + strand, within DZA65_RS02320 at 501.900 kb on + strand, within DZA65_RS02320 at 501.901 kb on - strand, within DZA65_RS02320 at 501.901 kb on - strand, within DZA65_RS02320 at 501.901 kb on - strand at 501.901 kb on - strand, within DZA65_RS02320 at 501.901 kb on - strand, within DZA65_RS02320 at 501.901 kb on - strand, within DZA65_RS02320 at 501.945 kb on + strand, within DZA65_RS02320 at 501.986 kb on - strand, within DZA65_RS02320 at 501.986 kb on - strand, within DZA65_RS02320 at 501.988 kb on + strand, within DZA65_RS02320 at 501.988 kb on + strand, within DZA65_RS02320 at 501.989 kb on - strand, within DZA65_RS02320 at 501.989 kb on - strand, within DZA65_RS02320 at 502.051 kb on + strand, within DZA65_RS02320 at 502.051 kb on + strand, within DZA65_RS02320 at 502.051 kb on + strand, within DZA65_RS02320 at 502.052 kb on - strand, within DZA65_RS02320 at 502.089 kb on + strand, within DZA65_RS02320 at 502.164 kb on + strand, within DZA65_RS02320 at 502.165 kb on - strand, within DZA65_RS02320 at 502.165 kb on - strand, within DZA65_RS02320 at 502.165 kb on - strand, within DZA65_RS02320 at 502.165 kb on - strand, within DZA65_RS02320 at 502.294 kb on + strand at 502.294 kb on + strand at 502.294 kb on + strand at 502.294 kb on + strand at 502.295 kb on - strand at 502.335 kb on - strand at 502.337 kb on + strand at 502.337 kb on + strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.338 kb on - strand at 502.360 kb on + strand at 502.360 kb on + strand at 502.385 kb on + strand at 502.385 kb on + strand at 502.386 kb on - strand at 502.488 kb on + strand, within DZA65_RS02325 at 502.535 kb on + strand, within DZA65_RS02325 at 502.535 kb on + strand, within DZA65_RS02325 at 502.536 kb on - strand, within DZA65_RS02325 at 502.536 kb on - strand, within DZA65_RS02325 at 502.568 kb on - strand, within DZA65_RS02325 at 502.769 kb on - strand, within DZA65_RS02325 at 502.769 kb on - strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.814 kb on + strand, within DZA65_RS02325 at 502.814 kb on + strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.956 kb on - strand, within DZA65_RS02325 at 503.006 kb on + strand, within DZA65_RS02325 at 503.126 kb on + strand, within DZA65_RS02325 at 503.127 kb on - strand at 503.159 kb on + strand, within DZA65_RS02325 at 503.169 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.275 kb on - strand at 503.324 kb on + strand at 503.324 kb on + strand at 503.324 kb on + strand at 503.325 kb on - strand at 503.325 kb on - strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.343 kb on + strand at 503.343 kb on + strand at 503.343 kb on + strand at 503.599 kb on - strand, within DZA65_RS02330 at 503.798 kb on - strand, within DZA65_RS02330 at 503.798 kb on - strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.887 kb on - strand, within DZA65_RS02330 at 504.082 kb on + strand, within DZA65_RS02330 at 504.082 kb on + strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.145 kb on + strand, within DZA65_RS02330 at 504.145 kb on + strand, within DZA65_RS02330 at 504.148 kb on - strand, within DZA65_RS02330 at 504.168 kb on + strand, within DZA65_RS02330 at 504.168 kb on + strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.264 kb on + strand, within DZA65_RS02330 at 504.264 kb on + strand, within DZA65_RS02330
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 501,397 + +1.1 501,397 + -1.3 501,398 - -0.1 501,398 - -0.7 501,398 - +0.6 501,424 + -0.1 501,424 + -0.9 501,424 + -0.2 501,424 + -1.1 501,424 + -1.4 501,424 + -0.8 501,424 + -0.8 501,424 + -0.1 501,425 - +0.3 501,425 - +0.6 501,425 - +0.6 501,432 - +0.1 501,432 - -1.4 501,444 + -2.2 501,454 + +2.4 501,454 + +0.5 501,455 - -1.4 501,455 - -0.2 501,455 - -0.4 501,455 - -0.4 501,615 + DZA65_RS02320 0.19 -1.2 501,615 + DZA65_RS02320 0.19 -0.5 501,615 + DZA65_RS02320 0.19 -0.4 501,685 + DZA65_RS02320 0.26 +0.1 501,685 + DZA65_RS02320 0.26 -0.1 501,685 + DZA65_RS02320 0.26 +0.2 501,723 + DZA65_RS02320 0.30 -1.4 501,723 + DZA65_RS02320 0.30 -1.1 501,724 - DZA65_RS02320 0.30 +0.3 501,724 - DZA65_RS02320 0.30 -0.4 501,738 + DZA65_RS02320 0.32 -1.5 501,738 + DZA65_RS02320 0.32 -1.9 501,739 - DZA65_RS02320 0.32 -1.4 501,739 - DZA65_RS02320 0.32 -1.2 501,900 + DZA65_RS02320 0.50 -1.3 501,900 + DZA65_RS02320 0.50 -1.8 501,901 - DZA65_RS02320 0.50 -0.7 501,901 - DZA65_RS02320 0.50 -0.7 501,901 - +0.3 501,901 - DZA65_RS02320 0.50 -0.2 501,901 - DZA65_RS02320 0.50 +0.1 501,901 - DZA65_RS02320 0.50 -1.7 501,945 + DZA65_RS02320 0.54 +0.6 501,986 - DZA65_RS02320 0.59 +0.5 501,986 - DZA65_RS02320 0.59 +0.8 501,988 + DZA65_RS02320 0.59 +0.4 501,988 + DZA65_RS02320 0.59 -0.9 501,989 - DZA65_RS02320 0.59 -0.7 501,989 - DZA65_RS02320 0.59 -0.2 502,051 + DZA65_RS02320 0.66 -1.3 502,051 + DZA65_RS02320 0.66 -0.9 502,051 + DZA65_RS02320 0.66 -0.4 502,052 - DZA65_RS02320 0.66 +0.5 502,089 + DZA65_RS02320 0.70 -0.7 502,164 + DZA65_RS02320 0.78 -1.9 502,165 - DZA65_RS02320 0.78 +1.1 502,165 - DZA65_RS02320 0.78 -1.4 502,165 - DZA65_RS02320 0.78 -1.2 502,165 - DZA65_RS02320 0.78 +0.8 502,294 + +1.0 502,294 + +0.3 502,294 + -1.2 502,294 + +0.2 502,295 - +0.2 502,335 - +0.6 502,337 + -0.4 502,337 + -1.5 502,338 - +0.1 502,338 - -0.2 502,338 - -0.4 502,338 - -0.9 502,338 - +0.4 502,338 - -2.5 502,338 - +0.1 502,338 - +0.1 502,360 + -0.7 502,360 + -0.8 502,385 + -0.7 502,385 + -0.5 502,386 - -0.9 502,488 + DZA65_RS02325 0.13 +0.6 502,535 + DZA65_RS02325 0.18 -0.3 502,535 + DZA65_RS02325 0.18 -0.4 502,536 - DZA65_RS02325 0.18 +0.3 502,536 - DZA65_RS02325 0.18 -0.1 502,568 - DZA65_RS02325 0.21 -0.1 502,769 - DZA65_RS02325 0.43 -1.7 502,769 - DZA65_RS02325 0.43 -0.1 502,801 + DZA65_RS02325 0.46 +0.6 502,801 + DZA65_RS02325 0.46 +0.0 502,801 + DZA65_RS02325 0.46 +1.6 502,802 - DZA65_RS02325 0.46 -1.1 502,802 - DZA65_RS02325 0.46 -1.9 502,802 - DZA65_RS02325 0.46 +0.6 502,802 - DZA65_RS02325 0.46 -2.1 502,802 - DZA65_RS02325 0.46 -0.1 502,802 - DZA65_RS02325 0.46 +2.6 502,802 - DZA65_RS02325 0.46 +0.9 502,814 + DZA65_RS02325 0.48 +0.2 502,814 + DZA65_RS02325 0.48 -0.1 502,815 - DZA65_RS02325 0.48 -1.1 502,815 - DZA65_RS02325 0.48 -0.5 502,815 - DZA65_RS02325 0.48 -1.4 502,815 - DZA65_RS02325 0.48 -0.5 502,815 - DZA65_RS02325 0.48 +0.3 502,890 + DZA65_RS02325 0.56 -0.8 502,890 + DZA65_RS02325 0.56 +0.6 502,890 + DZA65_RS02325 0.56 +0.5 502,890 + DZA65_RS02325 0.56 -0.5 502,890 + +0.6 502,890 + DZA65_RS02325 0.56 -0.8 502,890 + DZA65_RS02325 0.56 +1.2 502,890 + DZA65_RS02325 0.56 -2.4 502,890 + DZA65_RS02325 0.56 +0.3 502,890 + DZA65_RS02325 0.56 +0.6 502,890 + DZA65_RS02325 0.56 -1.2 502,891 - DZA65_RS02325 0.56 +0.8 502,891 - DZA65_RS02325 0.56 -0.7 502,891 - DZA65_RS02325 0.56 -1.5 502,891 - DZA65_RS02325 0.56 +0.6 502,891 - DZA65_RS02325 0.56 +0.6 502,956 - DZA65_RS02325 0.63 -0.7 503,006 + DZA65_RS02325 0.68 -1.1 503,126 + DZA65_RS02325 0.81 -1.8 503,127 - +1.1 503,159 + DZA65_RS02325 0.85 +0.3 503,169 + DZA65_RS02325 0.86 +0.8 503,176 + DZA65_RS02325 0.87 +0.4 503,176 + DZA65_RS02325 0.87 -2.1 503,176 + DZA65_RS02325 0.87 -0.2 503,176 + DZA65_RS02325 0.87 -0.5 503,176 + DZA65_RS02325 0.87 -1.2 503,176 + DZA65_RS02325 0.87 -0.2 503,176 + DZA65_RS02325 0.87 -0.8 503,176 + DZA65_RS02325 0.87 +0.1 503,177 - DZA65_RS02325 0.87 +0.6 503,177 - DZA65_RS02325 0.87 +0.6 503,177 - DZA65_RS02325 0.87 -0.0 503,177 - DZA65_RS02325 0.87 -0.7 503,177 - DZA65_RS02325 0.87 +2.3 503,177 - DZA65_RS02325 0.87 -0.9 503,177 - DZA65_RS02325 0.87 -0.3 503,177 - DZA65_RS02325 0.87 -1.2 503,177 - DZA65_RS02325 0.87 -0.7 503,177 - DZA65_RS02325 0.87 +0.4 503,177 - DZA65_RS02325 0.87 -1.2 503,177 - DZA65_RS02325 0.87 -0.9 503,177 - DZA65_RS02325 0.87 -0.7 503,177 - DZA65_RS02325 0.87 -1.0 503,177 - DZA65_RS02325 0.87 +1.4 503,275 - -0.8 503,324 + +1.9 503,324 + -1.8 503,324 + +0.6 503,325 - +0.1 503,325 - -0.4 503,331 + -0.8 503,331 + -1.5 503,331 + -0.1 503,331 + +0.9 503,331 + +1.1 503,332 - -2.3 503,332 - +0.1 503,332 - +0.1 503,332 - -1.2 503,332 - -0.5 503,332 - -0.3 503,332 - +0.1 503,337 + +1.9 503,337 + -0.7 503,337 + +0.4 503,337 + -0.9 503,337 + -0.4 503,337 + -0.4 503,337 + -1.2 503,337 + -0.4 503,337 + -0.7 503,337 + -1.8 503,337 + +0.4 503,337 + -1.5 503,337 + -1.6 503,337 + -1.0 503,337 + +0.8 503,337 + +0.1 503,337 + +0.4 503,337 + +0.3 503,337 + -1.4 503,337 + -0.1 503,337 + -0.4 503,338 - +0.9 503,338 - -1.4 503,338 - -0.6 503,338 - +0.3 503,338 - -0.3 503,338 - -0.2 503,338 - -2.5 503,338 - -0.6 503,338 - +0.2 503,338 - -1.2 503,338 - -1.4 503,338 - +0.1 503,338 - -1.8 503,338 - -0.2 503,338 - -0.8 503,338 - -0.2 503,343 + -1.2 503,343 + -1.4 503,343 + -0.7 503,599 - DZA65_RS02330 0.20 +0.6 503,798 - DZA65_RS02330 0.40 -1.2 503,798 - DZA65_RS02330 0.40 +2.1 503,886 + DZA65_RS02330 0.49 -1.4 503,886 + DZA65_RS02330 0.49 -1.2 503,886 + DZA65_RS02330 0.49 +0.3 503,886 + DZA65_RS02330 0.49 +2.0 503,886 + DZA65_RS02330 0.49 -1.4 503,886 + DZA65_RS02330 0.49 +0.2 503,887 - DZA65_RS02330 0.49 -0.9 504,082 + DZA65_RS02330 0.69 -1.6 504,082 + DZA65_RS02330 0.69 -1.7 504,083 - DZA65_RS02330 0.69 +0.1 504,083 - DZA65_RS02330 0.69 -0.9 504,083 - DZA65_RS02330 0.69 -0.6 504,083 - DZA65_RS02330 0.69 +1.6 504,083 - DZA65_RS02330 0.69 -0.4 504,083 - DZA65_RS02330 0.69 +0.4 504,083 - DZA65_RS02330 0.69 +0.6 504,083 - DZA65_RS02330 0.69 +0.6 504,083 - DZA65_RS02330 0.69 -0.7 504,083 - DZA65_RS02330 0.69 +1.2 504,083 - DZA65_RS02330 0.69 -1.2 504,083 - DZA65_RS02330 0.69 +0.1 504,145 + DZA65_RS02330 0.76 +0.3 504,145 + DZA65_RS02330 0.76 -1.4 504,148 - DZA65_RS02330 0.76 +0.6 504,168 + DZA65_RS02330 0.78 -0.8 504,168 + DZA65_RS02330 0.78 +0.1 504,169 - DZA65_RS02330 0.78 +0.4 504,169 - DZA65_RS02330 0.78 -0.7 504,169 - DZA65_RS02330 0.78 -1.5 504,264 + DZA65_RS02330 0.88 -0.9 504,264 + DZA65_RS02330 0.88 -0.5
Or see this region's nucleotide sequence