Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02300 and DZA65_RS02305 are separated by 34 nucleotides DZA65_RS02305 and DZA65_RS02310 are separated by 75 nucleotides DZA65_RS02310 and DZA65_RS02315 are separated by 688 nucleotides
DZA65_RS02300: DZA65_RS02300 - type-1Ba cytolytic delta-endotoxin, at 497,207 to 497,818
_RS02300
DZA65_RS02305: DZA65_RS02305 - type-2Aa cytolytic delta-endotoxin, at 497,853 to 498,452
_RS02305
DZA65_RS02310: DZA65_RS02310 - delta-endotoxin CytB, at 498,528 to 499,163
_RS02310
DZA65_RS02315: DZA65_RS02315 - ABC transporter substrate-binding protein, at 499,852 to 501,399
_RS02315
Position (kb) 498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 497.612 kb on - strand, within DZA65_RS02300 at 497.756 kb on + strand, within DZA65_RS02300 at 497.810 kb on + strand at 497.831 kb on + strand at 497.831 kb on + strand at 497.832 kb on - strand at 497.832 kb on - strand at 497.833 kb on + strand at 497.834 kb on - strand at 497.849 kb on - strand at 497.855 kb on - strand at 497.885 kb on + strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.957 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.964 kb on - strand, within DZA65_RS02305 at 497.964 kb on - strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.033 kb on - strand, within DZA65_RS02305 at 498.033 kb on - strand, within DZA65_RS02305 at 498.035 kb on + strand, within DZA65_RS02305 at 498.035 kb on + strand, within DZA65_RS02305 at 498.036 kb on - strand, within DZA65_RS02305 at 498.036 kb on - strand, within DZA65_RS02305 at 498.038 kb on - strand, within DZA65_RS02305 at 498.038 kb on - strand, within DZA65_RS02305 at 498.043 kb on + strand, within DZA65_RS02305 at 498.078 kb on - strand, within DZA65_RS02305 at 498.078 kb on - strand, within DZA65_RS02305 at 498.082 kb on + strand, within DZA65_RS02305 at 498.083 kb on - strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.168 kb on + strand, within DZA65_RS02305 at 498.169 kb on - strand, within DZA65_RS02305 at 498.169 kb on - strand, within DZA65_RS02305 at 498.169 kb on - strand at 498.169 kb on - strand, within DZA65_RS02305 at 498.224 kb on + strand at 498.224 kb on + strand, within DZA65_RS02305 at 498.237 kb on + strand, within DZA65_RS02305 at 498.238 kb on - strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.242 kb on + strand, within DZA65_RS02305 at 498.243 kb on - strand, within DZA65_RS02305 at 498.243 kb on - strand, within DZA65_RS02305 at 498.248 kb on + strand, within DZA65_RS02305 at 498.248 kb on + strand, within DZA65_RS02305 at 498.266 kb on + strand, within DZA65_RS02305 at 498.289 kb on - strand, within DZA65_RS02305 at 498.324 kb on - strand, within DZA65_RS02305 at 498.341 kb on + strand, within DZA65_RS02305 at 498.341 kb on + strand, within DZA65_RS02305 at 498.345 kb on - strand, within DZA65_RS02305 at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.440 kb on + strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.441 kb on - strand at 498.443 kb on + strand at 498.443 kb on + strand at 498.443 kb on + strand at 498.444 kb on - strand at 498.444 kb on - strand at 498.464 kb on - strand at 498.486 kb on + strand at 498.577 kb on + strand at 498.578 kb on - strand at 498.578 kb on - strand at 498.587 kb on + strand at 498.635 kb on + strand, within DZA65_RS02310 at 498.650 kb on + strand, within DZA65_RS02310 at 498.651 kb on - strand, within DZA65_RS02310 at 498.651 kb on - strand, within DZA65_RS02310 at 498.709 kb on + strand, within DZA65_RS02310 at 498.709 kb on + strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.710 kb on - strand, within DZA65_RS02310 at 498.713 kb on + strand, within DZA65_RS02310 at 498.714 kb on - strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.715 kb on + strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.716 kb on - strand, within DZA65_RS02310 at 498.785 kb on + strand, within DZA65_RS02310 at 498.785 kb on + strand, within DZA65_RS02310 at 499.119 kb on + strand at 499.119 kb on + strand at 499.123 kb on - strand at 499.123 kb on - strand at 499.170 kb on - strand at 499.200 kb on + strand at 499.201 kb on - strand at 499.422 kb on + strand at 499.444 kb on + strand at 499.444 kb on + strand at 499.444 kb on + strand at 499.445 kb on - strand at 499.445 kb on - strand at 499.487 kb on + strand at 499.512 kb on + strand at 499.548 kb on + strand at 499.548 kb on + strand at 499.609 kb on + strand at 499.609 kb on + strand at 499.610 kb on - strand at 499.675 kb on + strand at 499.675 kb on + strand at 499.702 kb on + strand at 499.703 kb on - strand at 499.706 kb on + strand at 499.706 kb on + strand at 499.706 kb on + strand at 499.706 kb on + strand at 499.707 kb on - strand at 499.707 kb on - strand at 499.707 kb on - strand at 499.707 kb on - strand at 499.707 kb on - strand at 499.707 kb on - strand at 499.735 kb on + strand at 499.833 kb on + strand at 499.861 kb on - strand at 499.900 kb on + strand at 499.900 kb on + strand at 499.900 kb on + strand at 499.901 kb on - strand at 499.908 kb on - strand at 499.908 kb on - strand at 499.916 kb on + strand at 499.973 kb on - strand at 499.973 kb on - strand at 499.973 kb on - strand at 499.973 kb on - strand at 500.009 kb on - strand, within DZA65_RS02315 at 500.016 kb on + strand, within DZA65_RS02315 at 500.016 kb on + strand, within DZA65_RS02315 at 500.016 kb on + strand, within DZA65_RS02315 at 500.017 kb on - strand, within DZA65_RS02315 at 500.017 kb on - strand, within DZA65_RS02315 at 500.017 kb on - strand, within DZA65_RS02315 at 500.017 kb on - strand, within DZA65_RS02315 at 500.017 kb on - strand, within DZA65_RS02315 at 500.058 kb on + strand, within DZA65_RS02315 at 500.092 kb on + strand, within DZA65_RS02315 at 500.093 kb on - strand, within DZA65_RS02315 at 500.093 kb on - strand, within DZA65_RS02315 at 500.093 kb on - strand, within DZA65_RS02315 at 500.093 kb on - strand, within DZA65_RS02315 at 500.093 kb on - strand, within DZA65_RS02315 at 500.138 kb on + strand, within DZA65_RS02315 at 500.139 kb on - strand, within DZA65_RS02315 at 500.141 kb on + strand, within DZA65_RS02315 at 500.142 kb on - strand, within DZA65_RS02315
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 497,612 - DZA65_RS02300 0.66 -1.4 497,756 + DZA65_RS02300 0.90 -1.7 497,810 + -1.2 497,831 + +0.6 497,831 + -1.5 497,832 - -0.4 497,832 - -1.5 497,833 + +1.3 497,834 - -0.8 497,849 - -0.7 497,855 - -0.7 497,885 + -0.8 497,886 - -0.9 497,886 - +0.6 497,886 - +0.1 497,886 - -1.3 497,886 - -0.4 497,886 - +0.6 497,957 + DZA65_RS02305 0.17 +0.8 497,963 + DZA65_RS02305 0.18 -0.2 497,963 + DZA65_RS02305 0.18 -0.9 497,963 + DZA65_RS02305 0.18 -0.4 497,963 + DZA65_RS02305 0.18 -0.5 497,963 + DZA65_RS02305 0.18 -1.2 497,964 - DZA65_RS02305 0.18 -1.6 497,964 - DZA65_RS02305 0.18 +0.9 498,032 + DZA65_RS02305 0.30 +1.1 498,032 + DZA65_RS02305 0.30 +0.2 498,032 + DZA65_RS02305 0.30 -1.6 498,032 + DZA65_RS02305 0.30 -1.3 498,032 + DZA65_RS02305 0.30 +0.1 498,033 - DZA65_RS02305 0.30 -0.5 498,033 - DZA65_RS02305 0.30 -0.7 498,035 + DZA65_RS02305 0.30 -0.1 498,035 + DZA65_RS02305 0.30 +0.2 498,036 - DZA65_RS02305 0.30 -0.0 498,036 - DZA65_RS02305 0.30 +0.2 498,038 - DZA65_RS02305 0.31 -0.9 498,038 - DZA65_RS02305 0.31 -0.2 498,043 + DZA65_RS02305 0.32 +0.1 498,078 - DZA65_RS02305 0.38 +1.6 498,078 - DZA65_RS02305 0.38 -0.6 498,082 + DZA65_RS02305 0.38 -1.7 498,083 - DZA65_RS02305 0.38 -0.2 498,168 + DZA65_RS02305 0.53 +0.2 498,168 + DZA65_RS02305 0.53 -0.7 498,168 + DZA65_RS02305 0.53 -1.2 498,168 + DZA65_RS02305 0.53 +2.2 498,169 - DZA65_RS02305 0.53 -0.4 498,169 - DZA65_RS02305 0.53 -1.7 498,169 - +2.1 498,169 - DZA65_RS02305 0.53 -1.2 498,224 + -0.4 498,224 + DZA65_RS02305 0.62 -0.2 498,237 + DZA65_RS02305 0.64 -0.9 498,238 - DZA65_RS02305 0.64 -0.9 498,242 + DZA65_RS02305 0.65 -1.3 498,242 + DZA65_RS02305 0.65 -1.1 498,242 + DZA65_RS02305 0.65 +0.2 498,242 + DZA65_RS02305 0.65 -0.2 498,242 + DZA65_RS02305 0.65 -0.7 498,243 - DZA65_RS02305 0.65 +0.2 498,243 - DZA65_RS02305 0.65 +0.1 498,248 + DZA65_RS02305 0.66 -0.7 498,248 + DZA65_RS02305 0.66 +1.4 498,266 + DZA65_RS02305 0.69 -0.9 498,289 - DZA65_RS02305 0.73 +0.1 498,324 - DZA65_RS02305 0.79 +1.2 498,341 + DZA65_RS02305 0.81 -0.8 498,341 + DZA65_RS02305 0.81 +0.8 498,345 - DZA65_RS02305 0.82 -1.5 498,440 + +0.4 498,440 + +0.1 498,440 + +0.5 498,440 + -2.6 498,440 + -1.2 498,440 + -0.7 498,441 - -1.3 498,441 - -0.4 498,441 - +0.6 498,441 - +0.1 498,443 + -0.4 498,443 + -0.1 498,443 + +1.3 498,444 - +0.5 498,444 - -0.1 498,464 - -1.2 498,486 + -0.9 498,577 + -1.7 498,578 - -1.4 498,578 - -1.4 498,587 + -1.5 498,635 + DZA65_RS02310 0.17 -0.7 498,650 + DZA65_RS02310 0.19 -0.8 498,651 - DZA65_RS02310 0.19 -0.2 498,651 - DZA65_RS02310 0.19 -0.2 498,709 + DZA65_RS02310 0.28 +0.2 498,709 + DZA65_RS02310 0.28 +0.4 498,710 - DZA65_RS02310 0.29 -0.2 498,710 - DZA65_RS02310 0.29 -0.4 498,710 - DZA65_RS02310 0.29 -0.1 498,713 + DZA65_RS02310 0.29 -0.9 498,714 - DZA65_RS02310 0.29 +1.6 498,715 + DZA65_RS02310 0.29 -0.3 498,715 + DZA65_RS02310 0.29 +1.1 498,715 + DZA65_RS02310 0.29 -0.4 498,716 - DZA65_RS02310 0.30 -1.8 498,716 - DZA65_RS02310 0.30 +0.4 498,716 - DZA65_RS02310 0.30 +0.1 498,785 + DZA65_RS02310 0.40 -0.9 498,785 + DZA65_RS02310 0.40 -0.7 499,119 + +0.1 499,119 + -0.4 499,123 - -0.7 499,123 - +0.3 499,170 - +0.4 499,200 + -1.2 499,201 - -0.9 499,422 + +1.1 499,444 + +0.1 499,444 + +0.8 499,444 + +1.1 499,445 - -1.4 499,445 - -0.2 499,487 + -0.8 499,512 + -0.5 499,548 + +0.9 499,548 + -2.8 499,609 + +0.3 499,609 + +1.1 499,610 - -0.4 499,675 + -1.4 499,675 + -0.3 499,702 + -1.2 499,703 - -1.4 499,706 + -0.1 499,706 + +0.5 499,706 + +0.1 499,706 + -0.4 499,707 - +0.2 499,707 - -0.3 499,707 - +0.1 499,707 - +0.5 499,707 - +0.1 499,707 - -0.1 499,735 + -0.7 499,833 + -0.6 499,861 - +1.2 499,900 + -0.4 499,900 + -0.1 499,900 + -1.6 499,901 - +0.6 499,908 - +0.9 499,908 - +0.1 499,916 + -0.4 499,973 - -1.8 499,973 - +0.2 499,973 - -1.2 499,973 - +0.3 500,009 - DZA65_RS02315 0.10 +2.3 500,016 + DZA65_RS02315 0.11 -1.2 500,016 + DZA65_RS02315 0.11 +0.2 500,016 + DZA65_RS02315 0.11 -1.0 500,017 - DZA65_RS02315 0.11 +0.1 500,017 - DZA65_RS02315 0.11 -1.8 500,017 - DZA65_RS02315 0.11 -0.7 500,017 - DZA65_RS02315 0.11 -1.2 500,017 - DZA65_RS02315 0.11 -0.3 500,058 + DZA65_RS02315 0.13 -0.9 500,092 + DZA65_RS02315 0.16 -1.2 500,093 - DZA65_RS02315 0.16 -0.2 500,093 - DZA65_RS02315 0.16 +0.1 500,093 - DZA65_RS02315 0.16 -0.5 500,093 - DZA65_RS02315 0.16 -0.9 500,093 - DZA65_RS02315 0.16 -1.1 500,138 + DZA65_RS02315 0.18 -1.5 500,139 - DZA65_RS02315 0.19 -1.4 500,141 + DZA65_RS02315 0.19 +0.0 500,142 - DZA65_RS02315 0.19 -1.4
Or see this region's nucleotide sequence