Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02240 and DZA65_RS02245 are separated by 344 nucleotides DZA65_RS02245 and DZA65_RS02250 are separated by 2 nucleotides DZA65_RS02250 and DZA65_RS02255 are separated by 13 nucleotides
DZA65_RS02240: DZA65_RS02240 - DeoR/GlpR transcriptional regulator, at 486,625 to 487,416
_RS02240
DZA65_RS02245: DZA65_RS02245 - transketolase, at 487,761 to 488,564
_RS02245
DZA65_RS02250: DZA65_RS02250 - transketolase, at 488,567 to 489,487
_RS02250
DZA65_RS02255: DZA65_RS02255 - D-threitol dehydrogenase, at 489,501 to 490,304
_RS02255
Position (kb) 487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2 at 486.782 kb on + strand, within DZA65_RS02240 at 486.782 kb on + strand, within DZA65_RS02240 at 486.782 kb on + strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 487.009 kb on - strand, within DZA65_RS02240 at 487.062 kb on + strand, within DZA65_RS02240 at 487.062 kb on + strand, within DZA65_RS02240 at 487.062 kb on + strand, within DZA65_RS02240 at 487.063 kb on - strand, within DZA65_RS02240 at 487.235 kb on + strand, within DZA65_RS02240 at 487.236 kb on - strand, within DZA65_RS02240 at 487.239 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.386 kb on + strand at 487.633 kb on + strand at 487.634 kb on - strand at 487.634 kb on - strand at 487.657 kb on - strand at 487.757 kb on - strand at 487.768 kb on + strand at 487.768 kb on + strand at 487.768 kb on + strand at 487.769 kb on - strand at 487.769 kb on - strand at 487.769 kb on - strand at 487.806 kb on + strand at 487.807 kb on - strand at 487.807 kb on - strand at 487.807 kb on - strand at 487.807 kb on - strand at 487.875 kb on - strand, within DZA65_RS02245 at 487.875 kb on - strand, within DZA65_RS02245 at 487.875 kb on - strand, within DZA65_RS02245 at 487.875 kb on - strand, within DZA65_RS02245 at 488.117 kb on - strand, within DZA65_RS02245 at 488.117 kb on - strand, within DZA65_RS02245 at 488.495 kb on - strand at 488.577 kb on + strand at 488.578 kb on - strand at 488.578 kb on - strand at 488.578 kb on - strand at 488.578 kb on - strand at 488.578 kb on - strand at 488.627 kb on - strand at 488.627 kb on - strand at 488.843 kb on + strand, within DZA65_RS02250 at 488.844 kb on - strand, within DZA65_RS02250 at 488.844 kb on - strand, within DZA65_RS02250 at 488.844 kb on - strand, within DZA65_RS02250 at 488.845 kb on + strand, within DZA65_RS02250 at 488.845 kb on + strand, within DZA65_RS02250 at 488.846 kb on - strand, within DZA65_RS02250 at 488.846 kb on - strand, within DZA65_RS02250 at 489.035 kb on + strand, within DZA65_RS02250 at 489.035 kb on + strand, within DZA65_RS02250 at 489.035 kb on + strand, within DZA65_RS02250 at 489.035 kb on + strand, within DZA65_RS02250 at 489.035 kb on + strand, within DZA65_RS02250 at 489.035 kb on + strand, within DZA65_RS02250 at 489.035 kb on + strand, within DZA65_RS02250 at 489.035 kb on + strand, within DZA65_RS02250 at 489.035 kb on + strand at 489.035 kb on + strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.036 kb on - strand, within DZA65_RS02250 at 489.044 kb on - strand at 489.248 kb on - strand, within DZA65_RS02250 at 489.248 kb on - strand, within DZA65_RS02250 at 489.263 kb on + strand, within DZA65_RS02250 at 489.263 kb on + strand, within DZA65_RS02250 at 489.263 kb on + strand, within DZA65_RS02250 at 489.264 kb on - strand, within DZA65_RS02250 at 489.264 kb on - strand, within DZA65_RS02250 at 489.264 kb on - strand, within DZA65_RS02250 at 489.264 kb on - strand, within DZA65_RS02250 at 489.264 kb on - strand, within DZA65_RS02250 at 489.288 kb on + strand, within DZA65_RS02250 at 489.288 kb on + strand, within DZA65_RS02250 at 489.288 kb on + strand at 489.288 kb on + strand, within DZA65_RS02250 at 489.288 kb on + strand, within DZA65_RS02250 at 489.288 kb on + strand, within DZA65_RS02250 at 489.289 kb on - strand, within DZA65_RS02250 at 489.289 kb on - strand at 489.289 kb on - strand, within DZA65_RS02250 at 489.289 kb on - strand, within DZA65_RS02250 at 489.289 kb on - strand, within DZA65_RS02250 at 489.289 kb on - strand, within DZA65_RS02250 at 489.289 kb on - strand, within DZA65_RS02250 at 489.331 kb on + strand, within DZA65_RS02250 at 489.331 kb on + strand, within DZA65_RS02250 at 489.332 kb on - strand, within DZA65_RS02250 at 489.332 kb on - strand, within DZA65_RS02250 at 489.386 kb on - strand, within DZA65_RS02250 at 489.452 kb on - strand at 489.452 kb on - strand at 489.519 kb on + strand at 489.519 kb on + strand at 489.519 kb on + strand at 489.520 kb on - strand at 489.520 kb on - strand at 489.528 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 486,782 + DZA65_RS02240 0.20 -1.4 486,782 + DZA65_RS02240 0.20 -1.3 486,782 + DZA65_RS02240 0.20 +0.9 486,783 - DZA65_RS02240 0.20 -0.9 486,783 - DZA65_RS02240 0.20 -0.5 486,783 - DZA65_RS02240 0.20 +0.2 487,009 - DZA65_RS02240 0.48 -2.3 487,062 + DZA65_RS02240 0.55 -0.8 487,062 + DZA65_RS02240 0.55 -0.6 487,062 + DZA65_RS02240 0.55 +0.2 487,063 - DZA65_RS02240 0.55 -0.4 487,235 + DZA65_RS02240 0.77 -0.3 487,236 - DZA65_RS02240 0.77 +0.5 487,239 - DZA65_RS02240 0.78 -1.8 487,251 - DZA65_RS02240 0.79 -0.9 487,251 - DZA65_RS02240 0.79 -0.2 487,251 - DZA65_RS02240 0.79 -1.5 487,251 - DZA65_RS02240 0.79 -1.7 487,386 + -2.0 487,633 + -0.5 487,634 - -1.7 487,634 - +0.8 487,657 - +1.7 487,757 - -1.2 487,768 + -2.3 487,768 + -1.7 487,768 + -1.5 487,769 - -0.7 487,769 - -1.9 487,769 - -1.3 487,806 + -0.5 487,807 - -0.7 487,807 - +0.4 487,807 - -1.2 487,807 - -0.9 487,875 - DZA65_RS02245 0.14 -0.3 487,875 - DZA65_RS02245 0.14 -0.3 487,875 - DZA65_RS02245 0.14 +1.7 487,875 - DZA65_RS02245 0.14 -0.8 488,117 - DZA65_RS02245 0.44 -2.0 488,117 - DZA65_RS02245 0.44 -2.0 488,495 - +0.5 488,577 + -0.2 488,578 - +0.3 488,578 - +0.8 488,578 - +0.3 488,578 - -0.4 488,578 - +0.8 488,627 - -0.9 488,627 - -1.3 488,843 + DZA65_RS02250 0.30 -1.3 488,844 - DZA65_RS02250 0.30 +0.7 488,844 - DZA65_RS02250 0.30 +0.4 488,844 - DZA65_RS02250 0.30 -0.5 488,845 + DZA65_RS02250 0.30 +0.3 488,845 + DZA65_RS02250 0.30 -0.3 488,846 - DZA65_RS02250 0.30 -0.3 488,846 - DZA65_RS02250 0.30 +0.7 489,035 + DZA65_RS02250 0.51 +0.9 489,035 + DZA65_RS02250 0.51 +0.1 489,035 + DZA65_RS02250 0.51 -1.2 489,035 + DZA65_RS02250 0.51 +0.3 489,035 + DZA65_RS02250 0.51 -1.3 489,035 + DZA65_RS02250 0.51 -1.0 489,035 + DZA65_RS02250 0.51 +0.2 489,035 + DZA65_RS02250 0.51 -0.3 489,035 + +1.7 489,035 + DZA65_RS02250 0.51 +0.1 489,036 - DZA65_RS02250 0.51 -2.5 489,036 - DZA65_RS02250 0.51 -2.0 489,036 - DZA65_RS02250 0.51 -0.3 489,036 - DZA65_RS02250 0.51 -0.2 489,036 - DZA65_RS02250 0.51 +0.3 489,036 - DZA65_RS02250 0.51 -0.9 489,036 - DZA65_RS02250 0.51 -0.3 489,036 - DZA65_RS02250 0.51 +0.7 489,036 - DZA65_RS02250 0.51 -0.9 489,036 - DZA65_RS02250 0.51 -1.0 489,036 - DZA65_RS02250 0.51 +1.0 489,036 - DZA65_RS02250 0.51 +0.7 489,036 - DZA65_RS02250 0.51 +1.2 489,036 - DZA65_RS02250 0.51 -1.9 489,036 - DZA65_RS02250 0.51 -0.9 489,044 - +2.7 489,248 - DZA65_RS02250 0.74 -0.6 489,248 - DZA65_RS02250 0.74 +0.3 489,263 + DZA65_RS02250 0.76 +0.7 489,263 + DZA65_RS02250 0.76 -1.3 489,263 + DZA65_RS02250 0.76 +0.7 489,264 - DZA65_RS02250 0.76 -0.3 489,264 - DZA65_RS02250 0.76 -0.7 489,264 - DZA65_RS02250 0.76 -1.9 489,264 - DZA65_RS02250 0.76 -0.8 489,264 - DZA65_RS02250 0.76 -0.5 489,288 + DZA65_RS02250 0.78 -2.3 489,288 + DZA65_RS02250 0.78 -1.2 489,288 + -0.3 489,288 + DZA65_RS02250 0.78 -1.5 489,288 + DZA65_RS02250 0.78 -0.3 489,288 + DZA65_RS02250 0.78 +0.3 489,289 - DZA65_RS02250 0.78 -0.2 489,289 - +0.1 489,289 - DZA65_RS02250 0.78 -0.7 489,289 - DZA65_RS02250 0.78 -0.5 489,289 - DZA65_RS02250 0.78 -0.6 489,289 - DZA65_RS02250 0.78 +0.1 489,289 - DZA65_RS02250 0.78 +1.1 489,331 + DZA65_RS02250 0.83 -0.6 489,331 + DZA65_RS02250 0.83 -2.0 489,332 - DZA65_RS02250 0.83 -0.2 489,332 - DZA65_RS02250 0.83 +0.2 489,386 - DZA65_RS02250 0.89 +0.1 489,452 - -2.5 489,452 - +1.2 489,519 + +0.1 489,519 + -0.6 489,519 + -1.2 489,520 - +0.3 489,520 - -1.5 489,528 - -0.7
Or see this region's nucleotide sequence