Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02235

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02230 and DZA65_RS02235 are separated by 145 nucleotidesDZA65_RS02235 and DZA65_RS02240 are separated by 75 nucleotides DZA65_RS02230: DZA65_RS02230 - MFS transporter, at 484,632 to 486,026 _RS02230 DZA65_RS02235: DZA65_RS02235 - HNH endonuclease, at 486,172 to 486,549 _RS02235 DZA65_RS02240: DZA65_RS02240 - DeoR/GlpR transcriptional regulator, at 486,625 to 487,416 _RS02240 Position (kb) 486 487Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 485.234 kb on + strand, within DZA65_RS02230at 485.392 kb on - strand, within DZA65_RS02230at 485.450 kb on + strand, within DZA65_RS02230at 485.450 kb on + strand, within DZA65_RS02230at 485.451 kb on - strand, within DZA65_RS02230at 485.459 kb on - strand, within DZA65_RS02230at 485.532 kb on + strand, within DZA65_RS02230at 485.532 kb on + strand, within DZA65_RS02230at 485.532 kb on + strand, within DZA65_RS02230at 485.533 kb on - strand, within DZA65_RS02230at 485.533 kb on - strand, within DZA65_RS02230at 485.533 kb on - strand, within DZA65_RS02230at 485.656 kb on + strand, within DZA65_RS02230at 485.656 kb on + strand, within DZA65_RS02230at 485.656 kb on + strand, within DZA65_RS02230at 485.656 kb on + strand, within DZA65_RS02230at 485.656 kb on + strandat 485.656 kb on + strand, within DZA65_RS02230at 485.656 kb on + strand, within DZA65_RS02230at 485.656 kb on + strand, within DZA65_RS02230at 485.657 kb on - strand, within DZA65_RS02230at 485.657 kb on - strandat 485.657 kb on - strand, within DZA65_RS02230at 485.657 kb on - strand, within DZA65_RS02230at 485.663 kb on + strand, within DZA65_RS02230at 485.663 kb on + strand, within DZA65_RS02230at 485.663 kb on + strand, within DZA65_RS02230at 485.663 kb on + strand, within DZA65_RS02230at 485.663 kb on + strand, within DZA65_RS02230at 485.663 kb on + strand, within DZA65_RS02230at 485.663 kb on + strand, within DZA65_RS02230at 485.664 kb on - strand, within DZA65_RS02230at 485.664 kb on - strand, within DZA65_RS02230at 485.664 kb on - strand, within DZA65_RS02230at 485.664 kb on - strand, within DZA65_RS02230at 485.664 kb on - strand, within DZA65_RS02230at 485.666 kb on + strand, within DZA65_RS02230at 485.731 kb on - strand, within DZA65_RS02230at 485.849 kb on + strand, within DZA65_RS02230at 486.052 kb on + strandat 486.053 kb on - strandat 486.053 kb on - strandat 486.094 kb on - strandat 486.094 kb on - strandat 486.094 kb on - strandat 486.096 kb on + strandat 486.096 kb on + strandat 486.097 kb on - strandat 486.097 kb on - strandat 486.097 kb on - strandat 486.097 kb on - strandat 486.097 kb on - strandat 486.097 kb on - strandat 486.097 kb on - strandat 486.097 kb on - strandat 486.102 kb on - strandat 486.102 kb on - strandat 486.133 kb on + strandat 486.134 kb on - strandat 486.149 kb on - strandat 486.149 kb on - strandat 486.149 kb on - strandat 486.166 kb on + strandat 486.166 kb on + strandat 486.167 kb on - strandat 486.167 kb on - strandat 486.167 kb on - strandat 486.171 kb on + strandat 486.171 kb on + strandat 486.171 kb on + strandat 486.171 kb on + strandat 486.171 kb on + strandat 486.171 kb on + strandat 486.171 kb on + strandat 486.171 kb on + strandat 486.171 kb on + strandat 486.171 kb on + strandat 486.172 kb on - strandat 486.172 kb on - strandat 486.172 kb on - strandat 486.172 kb on - strandat 486.172 kb on - strandat 486.172 kb on - strandat 486.172 kb on - strandat 486.172 kb on - strandat 486.172 kb on - strandat 486.172 kb on - strandat 486.175 kb on + strandat 486.175 kb on + strandat 486.175 kb on + strandat 486.175 kb on + strandat 486.175 kb on + strandat 486.175 kb on + strandat 486.176 kb on - strandat 486.176 kb on - strandat 486.176 kb on - strandat 486.176 kb on - strandat 486.176 kb on - strandat 486.176 kb on - strandat 486.183 kb on + strandat 486.210 kb on + strand, within DZA65_RS02235at 486.210 kb on + strand, within DZA65_RS02235at 486.210 kb on + strand, within DZA65_RS02235at 486.210 kb on + strand, within DZA65_RS02235at 486.210 kb on + strand, within DZA65_RS02235at 486.211 kb on - strand, within DZA65_RS02235at 486.211 kb on - strand, within DZA65_RS02235at 486.248 kb on + strand, within DZA65_RS02235at 486.255 kb on + strand, within DZA65_RS02235at 486.256 kb on - strand, within DZA65_RS02235at 486.256 kb on - strand, within DZA65_RS02235at 486.256 kb on - strand, within DZA65_RS02235at 486.256 kb on - strand, within DZA65_RS02235at 486.256 kb on - strand, within DZA65_RS02235at 486.302 kb on + strand, within DZA65_RS02235at 486.302 kb on + strand, within DZA65_RS02235at 486.302 kb on + strand, within DZA65_RS02235at 486.302 kb on + strand, within DZA65_RS02235at 486.303 kb on - strand, within DZA65_RS02235at 486.303 kb on - strand, within DZA65_RS02235at 486.313 kb on - strand, within DZA65_RS02235at 486.313 kb on - strand, within DZA65_RS02235at 486.313 kb on - strand, within DZA65_RS02235at 486.321 kb on + strand, within DZA65_RS02235at 486.321 kb on + strand, within DZA65_RS02235at 486.321 kb on + strand, within DZA65_RS02235at 486.321 kb on + strand, within DZA65_RS02235at 486.322 kb on - strand, within DZA65_RS02235at 486.322 kb on - strand, within DZA65_RS02235at 486.322 kb on - strand, within DZA65_RS02235at 486.322 kb on - strand, within DZA65_RS02235at 486.322 kb on - strand, within DZA65_RS02235at 486.322 kb on - strand, within DZA65_RS02235at 486.322 kb on - strand, within DZA65_RS02235at 486.322 kb on - strand, within DZA65_RS02235at 486.402 kb on + strand, within DZA65_RS02235at 486.402 kb on + strand, within DZA65_RS02235at 486.402 kb on + strand, within DZA65_RS02235at 486.402 kb on + strand, within DZA65_RS02235at 486.403 kb on - strand, within DZA65_RS02235at 486.403 kb on - strand, within DZA65_RS02235at 486.403 kb on - strand, within DZA65_RS02235at 486.403 kb on - strand, within DZA65_RS02235at 486.403 kb on - strand, within DZA65_RS02235at 486.403 kb on - strand, within DZA65_RS02235at 486.403 kb on - strand, within DZA65_RS02235at 486.406 kb on - strand, within DZA65_RS02235at 486.435 kb on + strand, within DZA65_RS02235at 486.435 kb on + strand, within DZA65_RS02235at 486.435 kb on + strand, within DZA65_RS02235at 486.435 kb on + strand, within DZA65_RS02235at 486.436 kb on - strand, within DZA65_RS02235at 486.511 kb on + strand, within DZA65_RS02235at 486.511 kb on + strand, within DZA65_RS02235at 486.512 kb on - strandat 486.512 kb on - strandat 486.512 kb on - strandat 486.514 kb on - strandat 486.514 kb on - strandat 486.598 kb on - strandat 486.598 kb on - strandat 486.600 kb on + strandat 486.601 kb on - strandat 486.707 kb on + strand, within DZA65_RS02240at 486.714 kb on + strand, within DZA65_RS02240at 486.715 kb on - strand, within DZA65_RS02240at 486.757 kb on + strand, within DZA65_RS02240at 486.757 kb on + strand, within DZA65_RS02240at 486.758 kb on - strand, within DZA65_RS02240at 486.758 kb on - strand, within DZA65_RS02240at 486.782 kb on + strand, within DZA65_RS02240at 486.782 kb on + strand, within DZA65_RS02240at 486.782 kb on + strand, within DZA65_RS02240at 486.783 kb on - strand, within DZA65_RS02240at 486.783 kb on - strand, within DZA65_RS02240at 486.783 kb on - strand, within DZA65_RS02240at 487.009 kb on - strand, within DZA65_RS02240at 487.062 kb on + strand, within DZA65_RS02240at 487.062 kb on + strand, within DZA65_RS02240at 487.062 kb on + strand, within DZA65_RS02240at 487.063 kb on - strand, within DZA65_RS02240at 487.235 kb on + strand, within DZA65_RS02240at 487.236 kb on - strand, within DZA65_RS02240at 487.239 kb on - strand, within DZA65_RS02240at 487.251 kb on - strand, within DZA65_RS02240at 487.251 kb on - strand, within DZA65_RS02240at 487.251 kb on - strand, within DZA65_RS02240at 487.251 kb on - strand, within DZA65_RS02240at 487.386 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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485,234 + DZA65_RS02230 0.43 +0.1
485,392 - DZA65_RS02230 0.54 +0.1
485,450 + DZA65_RS02230 0.59 -1.4
485,450 + DZA65_RS02230 0.59 +0.8
485,451 - DZA65_RS02230 0.59 +0.4
485,459 - DZA65_RS02230 0.59 -0.2
485,532 + DZA65_RS02230 0.65 -1.8
485,532 + DZA65_RS02230 0.65 +0.4
485,532 + DZA65_RS02230 0.65 -0.5
485,533 - DZA65_RS02230 0.65 -0.6
485,533 - DZA65_RS02230 0.65 +0.7
485,533 - DZA65_RS02230 0.65 +0.5
485,656 + DZA65_RS02230 0.73 -0.6
485,656 + DZA65_RS02230 0.73 -0.7
485,656 + DZA65_RS02230 0.73 -0.3
485,656 + DZA65_RS02230 0.73 -2.4
485,656 + +0.1
485,656 + DZA65_RS02230 0.73 -0.7
485,656 + DZA65_RS02230 0.73 -0.8
485,656 + DZA65_RS02230 0.73 -1.0
485,657 - DZA65_RS02230 0.73 +0.2
485,657 - +1.1
485,657 - DZA65_RS02230 0.73 -1.7
485,657 - DZA65_RS02230 0.73 -0.9
485,663 + DZA65_RS02230 0.74 -1.7
485,663 + DZA65_RS02230 0.74 -0.9
485,663 + DZA65_RS02230 0.74 +0.5
485,663 + DZA65_RS02230 0.74 -0.8
485,663 + DZA65_RS02230 0.74 -0.4
485,663 + DZA65_RS02230 0.74 +1.0
485,663 + DZA65_RS02230 0.74 +0.2
485,664 - DZA65_RS02230 0.74 -0.2
485,664 - DZA65_RS02230 0.74 +0.7
485,664 - DZA65_RS02230 0.74 +0.8
485,664 - DZA65_RS02230 0.74 -0.2
485,664 - DZA65_RS02230 0.74 +0.1
485,666 + DZA65_RS02230 0.74 +0.2
485,731 - DZA65_RS02230 0.79 -1.7
485,849 + DZA65_RS02230 0.87 -0.7
486,052 + -0.4
486,053 - -0.1
486,053 - -0.5
486,094 - -0.6
486,094 - +0.2
486,094 - -0.8
486,096 + -1.0
486,096 + +0.4
486,097 - -1.3
486,097 - +0.3
486,097 - -0.7
486,097 - +1.7
486,097 - +0.8
486,097 - -0.7
486,097 - +1.4
486,097 - -0.0
486,102 - -1.9
486,102 - -1.3
486,133 + -0.1
486,134 - -0.1
486,149 - -1.0
486,149 - -0.1
486,149 - +0.7
486,166 + -1.0
486,166 + +0.1
486,167 - +0.1
486,167 - -0.3
486,167 - +0.1
486,171 + +0.2
486,171 + +0.8
486,171 + +1.4
486,171 + +1.2
486,171 + -0.8
486,171 + +0.3
486,171 + -1.5
486,171 + +0.2
486,171 + -1.3
486,171 + -1.3
486,172 - -0.5
486,172 - -0.9
486,172 - -0.9
486,172 - -0.9
486,172 - +1.8
486,172 - -0.2
486,172 - +0.1
486,172 - -0.7
486,172 - +0.1
486,172 - +1.2
486,175 + -0.9
486,175 + +0.7
486,175 + +0.2
486,175 + -1.2
486,175 + -0.7
486,175 + +0.1
486,176 - -0.6
486,176 - -0.2
486,176 - -1.0
486,176 - -0.7
486,176 - -2.0
486,176 - -0.3
486,183 + +0.2
486,210 + DZA65_RS02235 0.10 -1.0
486,210 + DZA65_RS02235 0.10 -1.2
486,210 + DZA65_RS02235 0.10 +1.0
486,210 + DZA65_RS02235 0.10 -0.9
486,210 + DZA65_RS02235 0.10 +1.1
486,211 - DZA65_RS02235 0.10 -0.7
486,211 - DZA65_RS02235 0.10 -0.4
486,248 + DZA65_RS02235 0.20 -1.3
486,255 + DZA65_RS02235 0.22 +1.7
486,256 - DZA65_RS02235 0.22 +0.5
486,256 - DZA65_RS02235 0.22 -0.4
486,256 - DZA65_RS02235 0.22 -3.3
486,256 - DZA65_RS02235 0.22 -0.2
486,256 - DZA65_RS02235 0.22 +0.3
486,302 + DZA65_RS02235 0.34 -0.5
486,302 + DZA65_RS02235 0.34 -0.3
486,302 + DZA65_RS02235 0.34 +0.3
486,302 + DZA65_RS02235 0.34 +0.3
486,303 - DZA65_RS02235 0.35 -0.8
486,303 - DZA65_RS02235 0.35 +0.8
486,313 - DZA65_RS02235 0.37 +0.6
486,313 - DZA65_RS02235 0.37 -0.4
486,313 - DZA65_RS02235 0.37 +0.4
486,321 + DZA65_RS02235 0.39 +0.1
486,321 + DZA65_RS02235 0.39 -1.1
486,321 + DZA65_RS02235 0.39 +0.3
486,321 + DZA65_RS02235 0.39 +0.7
486,322 - DZA65_RS02235 0.40 -1.7
486,322 - DZA65_RS02235 0.40 +0.6
486,322 - DZA65_RS02235 0.40 -1.2
486,322 - DZA65_RS02235 0.40 -0.2
486,322 - DZA65_RS02235 0.40 -2.4
486,322 - DZA65_RS02235 0.40 +0.3
486,322 - DZA65_RS02235 0.40 +0.1
486,322 - DZA65_RS02235 0.40 -0.6
486,402 + DZA65_RS02235 0.61 +0.7
486,402 + DZA65_RS02235 0.61 -1.2
486,402 + DZA65_RS02235 0.61 -0.9
486,402 + DZA65_RS02235 0.61 -0.2
486,403 - DZA65_RS02235 0.61 -0.8
486,403 - DZA65_RS02235 0.61 -0.9
486,403 - DZA65_RS02235 0.61 -0.9
486,403 - DZA65_RS02235 0.61 -2.7
486,403 - DZA65_RS02235 0.61 +0.8
486,403 - DZA65_RS02235 0.61 -0.4
486,403 - DZA65_RS02235 0.61 -0.8
486,406 - DZA65_RS02235 0.62 +0.2
486,435 + DZA65_RS02235 0.70 -0.0
486,435 + DZA65_RS02235 0.70 +0.7
486,435 + DZA65_RS02235 0.70 +1.1
486,435 + DZA65_RS02235 0.70 -0.2
486,436 - DZA65_RS02235 0.70 +0.1
486,511 + DZA65_RS02235 0.90 -0.9
486,511 + DZA65_RS02235 0.90 -2.0
486,512 - +0.3
486,512 - +0.1
486,512 - +0.5
486,514 - -0.7
486,514 - +0.7
486,598 - -1.3
486,598 - -1.0
486,600 + +1.2
486,601 - -1.2
486,707 + DZA65_RS02240 0.10 -1.7
486,714 + DZA65_RS02240 0.11 -0.6
486,715 - DZA65_RS02240 0.11 -0.7
486,757 + DZA65_RS02240 0.17 +0.1
486,757 + DZA65_RS02240 0.17 +0.2
486,758 - DZA65_RS02240 0.17 -1.5
486,758 - DZA65_RS02240 0.17 +3.2
486,782 + DZA65_RS02240 0.20 -1.4
486,782 + DZA65_RS02240 0.20 -1.3
486,782 + DZA65_RS02240 0.20 +0.9
486,783 - DZA65_RS02240 0.20 -0.9
486,783 - DZA65_RS02240 0.20 -0.5
486,783 - DZA65_RS02240 0.20 +0.2
487,009 - DZA65_RS02240 0.48 -2.3
487,062 + DZA65_RS02240 0.55 -0.8
487,062 + DZA65_RS02240 0.55 -0.6
487,062 + DZA65_RS02240 0.55 +0.2
487,063 - DZA65_RS02240 0.55 -0.4
487,235 + DZA65_RS02240 0.77 -0.3
487,236 - DZA65_RS02240 0.77 +0.5
487,239 - DZA65_RS02240 0.78 -1.8
487,251 - DZA65_RS02240 0.79 -0.9
487,251 - DZA65_RS02240 0.79 -0.2
487,251 - DZA65_RS02240 0.79 -1.5
487,251 - DZA65_RS02240 0.79 -1.7
487,386 + -2.0

Or see this region's nucleotide sequence