Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02080 and DZA65_RS02085 are separated by 99 nucleotides DZA65_RS02085 and DZA65_RS02090 are separated by 43 nucleotides
DZA65_RS02080: DZA65_RS02080 - tyrosine-type recombinase/integrase, at 458,861 to 460,129
_RS02080
DZA65_RS02085: DZA65_RS02085 - dNTP triphosphohydrolase, at 460,229 to 461,446
_RS02085
DZA65_RS02090: DZA65_RS02090 - TIGR04141 family sporadically distributed protein, at 461,490 to 463,118
_RS02090
Position (kb) 460
461
462 Strain fitness (log2 ratio) -2
-1
0
1
2 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080 at 459.491 kb on - strand, within DZA65_RS02080 at 459.525 kb on - strand, within DZA65_RS02080 at 459.525 kb on - strand, within DZA65_RS02080 at 459.525 kb on - strand, within DZA65_RS02080 at 459.555 kb on + strand, within DZA65_RS02080 at 459.555 kb on + strand, within DZA65_RS02080 at 459.556 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.563 kb on - strand, within DZA65_RS02080 at 459.578 kb on - strand, within DZA65_RS02080 at 459.594 kb on + strand, within DZA65_RS02080 at 459.594 kb on + strand, within DZA65_RS02080 at 459.594 kb on + strand, within DZA65_RS02080 at 459.595 kb on - strand, within DZA65_RS02080 at 459.595 kb on - strand, within DZA65_RS02080 at 459.626 kb on - strand, within DZA65_RS02080 at 459.626 kb on - strand, within DZA65_RS02080 at 459.664 kb on + strand, within DZA65_RS02080 at 459.665 kb on - strand, within DZA65_RS02080 at 459.726 kb on + strand, within DZA65_RS02080 at 459.741 kb on + strand, within DZA65_RS02080 at 459.741 kb on + strand, within DZA65_RS02080 at 459.742 kb on - strand, within DZA65_RS02080 at 459.760 kb on + strand, within DZA65_RS02080 at 459.863 kb on + strand, within DZA65_RS02080 at 459.863 kb on + strand, within DZA65_RS02080 at 459.864 kb on - strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.882 kb on + strand, within DZA65_RS02080 at 459.883 kb on - strand, within DZA65_RS02080 at 459.883 kb on - strand, within DZA65_RS02080 at 459.883 kb on - strand, within DZA65_RS02080 at 459.901 kb on + strand, within DZA65_RS02080 at 459.904 kb on + strand, within DZA65_RS02080 at 459.905 kb on - strand, within DZA65_RS02080 at 459.921 kb on + strand, within DZA65_RS02080 at 459.921 kb on + strand, within DZA65_RS02080 at 459.921 kb on + strand, within DZA65_RS02080 at 459.922 kb on - strand, within DZA65_RS02080 at 459.922 kb on - strand, within DZA65_RS02080 at 459.954 kb on + strand, within DZA65_RS02080 at 459.955 kb on - strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.001 kb on + strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.002 kb on - strand, within DZA65_RS02080 at 460.003 kb on + strand at 460.003 kb on + strand at 460.062 kb on - strand at 460.108 kb on - strand at 460.119 kb on + strand at 460.120 kb on - strand at 460.151 kb on - strand at 460.191 kb on - strand at 460.201 kb on + strand at 460.204 kb on + strand at 460.207 kb on + strand at 460.221 kb on + strand at 460.228 kb on + strand at 460.233 kb on - strand at 460.233 kb on - strand at 460.279 kb on - strand at 460.281 kb on + strand at 460.342 kb on + strand at 460.342 kb on + strand at 460.343 kb on - strand at 460.353 kb on - strand, within DZA65_RS02085 at 460.353 kb on - strand, within DZA65_RS02085 at 460.415 kb on - strand, within DZA65_RS02085 at 460.416 kb on + strand, within DZA65_RS02085 at 460.417 kb on - strand, within DZA65_RS02085 at 460.442 kb on - strand, within DZA65_RS02085 at 460.454 kb on - strand, within DZA65_RS02085 at 460.454 kb on - strand, within DZA65_RS02085 at 460.458 kb on + strand, within DZA65_RS02085 at 460.485 kb on + strand, within DZA65_RS02085 at 460.485 kb on + strand, within DZA65_RS02085 at 460.486 kb on - strand, within DZA65_RS02085 at 460.503 kb on + strand, within DZA65_RS02085 at 460.536 kb on + strand, within DZA65_RS02085 at 460.812 kb on + strand, within DZA65_RS02085 at 460.813 kb on - strand, within DZA65_RS02085 at 460.907 kb on + strand, within DZA65_RS02085 at 460.908 kb on - strand, within DZA65_RS02085 at 460.908 kb on - strand, within DZA65_RS02085 at 460.978 kb on - strand, within DZA65_RS02085 at 460.978 kb on - strand, within DZA65_RS02085 at 460.986 kb on + strand, within DZA65_RS02085 at 460.987 kb on - strand, within DZA65_RS02085 at 461.083 kb on - strand, within DZA65_RS02085 at 461.083 kb on - strand, within DZA65_RS02085 at 461.105 kb on - strand, within DZA65_RS02085 at 461.112 kb on + strand, within DZA65_RS02085 at 461.131 kb on + strand, within DZA65_RS02085 at 461.134 kb on - strand, within DZA65_RS02085 at 461.150 kb on - strand, within DZA65_RS02085 at 461.166 kb on + strand at 461.274 kb on - strand, within DZA65_RS02085 at 461.275 kb on + strand, within DZA65_RS02085 at 461.279 kb on - strand, within DZA65_RS02085 at 461.281 kb on + strand, within DZA65_RS02085 at 461.282 kb on - strand, within DZA65_RS02085 at 461.302 kb on - strand, within DZA65_RS02085 at 461.305 kb on - strand, within DZA65_RS02085 at 461.338 kb on + strand at 461.390 kb on - strand at 461.434 kb on - strand at 461.528 kb on - strand at 461.528 kb on - strand at 461.632 kb on + strand at 461.751 kb on - strand, within DZA65_RS02090 at 461.895 kb on + strand, within DZA65_RS02090 at 461.896 kb on - strand, within DZA65_RS02090 at 461.904 kb on - strand, within DZA65_RS02090 at 461.931 kb on - strand, within DZA65_RS02090 at 462.262 kb on + strand, within DZA65_RS02090 at 462.262 kb on + strand, within DZA65_RS02090 at 462.263 kb on - strand, within DZA65_RS02090 at 462.300 kb on - strand, within DZA65_RS02090 at 462.303 kb on + strand, within DZA65_RS02090
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 459,248 - DZA65_RS02080 0.30 -0.3 459,248 - DZA65_RS02080 0.30 +1.5 459,248 - DZA65_RS02080 0.30 +0.2 459,248 - DZA65_RS02080 0.30 -0.8 459,250 + DZA65_RS02080 0.31 +0.4 459,250 + DZA65_RS02080 0.31 -0.5 459,250 + DZA65_RS02080 0.31 -1.7 459,250 + DZA65_RS02080 0.31 -0.1 459,250 + DZA65_RS02080 0.31 +1.5 459,251 - DZA65_RS02080 0.31 -0.7 459,251 - DZA65_RS02080 0.31 +0.5 459,251 - -0.3 459,251 - DZA65_RS02080 0.31 -1.1 459,251 - DZA65_RS02080 0.31 +0.9 459,491 - DZA65_RS02080 0.50 -1.3 459,525 - DZA65_RS02080 0.52 -1.1 459,525 - DZA65_RS02080 0.52 -1.1 459,525 - DZA65_RS02080 0.52 -0.1 459,555 + DZA65_RS02080 0.55 +0.3 459,555 + DZA65_RS02080 0.55 -1.9 459,556 - DZA65_RS02080 0.55 +0.9 459,563 - DZA65_RS02080 0.55 -1.4 459,563 - DZA65_RS02080 0.55 -0.9 459,563 - DZA65_RS02080 0.55 +0.3 459,563 - DZA65_RS02080 0.55 -1.1 459,578 - DZA65_RS02080 0.57 -1.0 459,594 + DZA65_RS02080 0.58 +0.1 459,594 + DZA65_RS02080 0.58 -0.7 459,594 + DZA65_RS02080 0.58 -0.4 459,595 - DZA65_RS02080 0.58 +0.4 459,595 - DZA65_RS02080 0.58 +0.8 459,626 - DZA65_RS02080 0.60 +0.1 459,626 - DZA65_RS02080 0.60 +0.3 459,664 + DZA65_RS02080 0.63 +0.8 459,665 - DZA65_RS02080 0.63 -1.7 459,726 + DZA65_RS02080 0.68 +1.2 459,741 + DZA65_RS02080 0.69 -0.7 459,741 + DZA65_RS02080 0.69 -1.7 459,742 - DZA65_RS02080 0.69 -0.9 459,760 + DZA65_RS02080 0.71 -0.9 459,863 + DZA65_RS02080 0.79 -0.7 459,863 + DZA65_RS02080 0.79 -0.3 459,864 - DZA65_RS02080 0.79 -0.7 459,882 + DZA65_RS02080 0.80 +0.2 459,882 + DZA65_RS02080 0.80 -0.1 459,882 + DZA65_RS02080 0.80 +0.3 459,882 + DZA65_RS02080 0.80 -0.3 459,882 + DZA65_RS02080 0.80 -2.4 459,883 - DZA65_RS02080 0.81 -0.8 459,883 - DZA65_RS02080 0.81 -2.1 459,883 - DZA65_RS02080 0.81 +0.9 459,901 + DZA65_RS02080 0.82 -0.5 459,904 + DZA65_RS02080 0.82 -0.6 459,905 - DZA65_RS02080 0.82 -0.4 459,921 + DZA65_RS02080 0.84 -0.7 459,921 + DZA65_RS02080 0.84 +0.5 459,921 + DZA65_RS02080 0.84 +0.9 459,922 - DZA65_RS02080 0.84 -1.7 459,922 - DZA65_RS02080 0.84 -0.2 459,954 + DZA65_RS02080 0.86 -0.5 459,955 - DZA65_RS02080 0.86 -0.1 460,001 + DZA65_RS02080 0.90 -2.1 460,001 + DZA65_RS02080 0.90 -0.5 460,001 + DZA65_RS02080 0.90 -1.0 460,001 + DZA65_RS02080 0.90 +1.3 460,001 + DZA65_RS02080 0.90 +0.6 460,001 + DZA65_RS02080 0.90 -2.1 460,001 + DZA65_RS02080 0.90 +0.8 460,001 + DZA65_RS02080 0.90 -0.6 460,001 + DZA65_RS02080 0.90 -1.5 460,002 - DZA65_RS02080 0.90 -1.0 460,002 - DZA65_RS02080 0.90 -0.1 460,002 - DZA65_RS02080 0.90 +2.2 460,002 - DZA65_RS02080 0.90 +0.1 460,002 - DZA65_RS02080 0.90 -0.1 460,002 - DZA65_RS02080 0.90 +0.1 460,002 - DZA65_RS02080 0.90 -0.5 460,002 - DZA65_RS02080 0.90 -0.4 460,002 - DZA65_RS02080 0.90 -0.7 460,002 - DZA65_RS02080 0.90 +0.3 460,002 - DZA65_RS02080 0.90 -0.7 460,003 + -0.9 460,003 + -1.0 460,062 - +0.1 460,108 - -1.7 460,119 + +0.8 460,120 - -1.5 460,151 - +0.1 460,191 - -1.3 460,201 + +0.7 460,204 + -0.9 460,207 + -0.3 460,221 + +0.2 460,228 + +0.7 460,233 - -0.7 460,233 - -1.9 460,279 - -0.7 460,281 + -0.2 460,342 + -0.1 460,342 + -1.5 460,343 - +0.1 460,353 - DZA65_RS02085 0.10 -2.5 460,353 - DZA65_RS02085 0.10 -1.3 460,415 - DZA65_RS02085 0.15 +1.7 460,416 + DZA65_RS02085 0.15 +0.4 460,417 - DZA65_RS02085 0.15 -0.5 460,442 - DZA65_RS02085 0.17 +0.8 460,454 - DZA65_RS02085 0.18 +0.3 460,454 - DZA65_RS02085 0.18 -0.7 460,458 + DZA65_RS02085 0.19 +0.7 460,485 + DZA65_RS02085 0.21 -1.2 460,485 + DZA65_RS02085 0.21 -2.1 460,486 - DZA65_RS02085 0.21 -0.1 460,503 + DZA65_RS02085 0.22 -0.5 460,536 + DZA65_RS02085 0.25 +0.9 460,812 + DZA65_RS02085 0.48 -0.2 460,813 - DZA65_RS02085 0.48 -0.8 460,907 + DZA65_RS02085 0.56 -0.9 460,908 - DZA65_RS02085 0.56 +0.1 460,908 - DZA65_RS02085 0.56 +1.3 460,978 - DZA65_RS02085 0.61 -2.1 460,978 - DZA65_RS02085 0.61 -1.3 460,986 + DZA65_RS02085 0.62 +0.4 460,987 - DZA65_RS02085 0.62 -0.9 461,083 - DZA65_RS02085 0.70 -0.2 461,083 - DZA65_RS02085 0.70 -2.6 461,105 - DZA65_RS02085 0.72 +0.3 461,112 + DZA65_RS02085 0.72 -1.1 461,131 + DZA65_RS02085 0.74 -0.5 461,134 - DZA65_RS02085 0.74 -0.7 461,150 - DZA65_RS02085 0.76 -0.1 461,166 + +0.7 461,274 - DZA65_RS02085 0.86 -1.2 461,275 + DZA65_RS02085 0.86 -0.9 461,279 - DZA65_RS02085 0.86 +0.3 461,281 + DZA65_RS02085 0.86 +0.3 461,282 - DZA65_RS02085 0.86 -1.7 461,302 - DZA65_RS02085 0.88 +0.5 461,305 - DZA65_RS02085 0.88 -0.2 461,338 + -0.3 461,390 - +0.2 461,434 - -0.3 461,528 - +0.1 461,528 - -0.8 461,632 + -1.1 461,751 - DZA65_RS02090 0.16 -0.7 461,895 + DZA65_RS02090 0.25 -0.7 461,896 - DZA65_RS02090 0.25 +0.3 461,904 - DZA65_RS02090 0.25 -0.2 461,931 - DZA65_RS02090 0.27 -0.9 462,262 + DZA65_RS02090 0.47 -0.9 462,262 + DZA65_RS02090 0.47 +0.1 462,263 - DZA65_RS02090 0.47 +1.7 462,300 - DZA65_RS02090 0.50 +0.1 462,303 + DZA65_RS02090 0.50 -2.1
Or see this region's nucleotide sequence