Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02065 and DZA65_RS02070 are separated by 1 nucleotides DZA65_RS02070 and DZA65_RS02075 are separated by 221 nucleotides DZA65_RS02075 and DZA65_RS02080 are separated by 219 nucleotides
DZA65_RS02065: DZA65_RS02065 - LPS export ABC transporter permease LptF, at 456,145 to 457,263
_RS02065
DZA65_RS02070: DZA65_RS02070 - LPS export ABC transporter permease LptG, at 457,265 to 458,335
_RS02070
DZA65_RS02075: DZA65_RS02075 - tRNA-Leu, at 458,557 to 458,641
_RS02075
DZA65_RS02080: DZA65_RS02080 - tyrosine-type recombinase/integrase, at 458,861 to 460,129
_RS02080
Position (kb) 457
458
459 Strain fitness (log2 ratio) -2
-1
0
1 at 458.392 kb on - strand at 458.392 kb on - strand at 458.419 kb on + strand at 458.419 kb on + strand at 458.433 kb on - strand at 458.520 kb on + strand at 458.822 kb on - strand at 458.842 kb on + strand at 458.843 kb on - strand at 458.860 kb on + strand at 458.912 kb on + strand at 458.913 kb on - strand at 458.913 kb on - strand at 458.914 kb on + strand at 458.914 kb on + strand at 458.915 kb on - strand at 458.915 kb on - strand at 458.915 kb on - strand at 458.915 kb on - strand at 458.915 kb on - strand at 458.915 kb on - strand at 458.940 kb on - strand at 458.940 kb on - strand at 458.940 kb on - strand at 458.940 kb on - strand at 458.965 kb on + strand at 458.965 kb on + strand at 458.965 kb on + strand at 458.965 kb on + strand at 458.965 kb on + strand at 458.975 kb on + strand at 458.976 kb on - strand at 458.976 kb on - strand at 458.976 kb on - strand at 458.984 kb on + strand at 458.999 kb on - strand, within DZA65_RS02080 at 459.078 kb on + strand, within DZA65_RS02080 at 459.079 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.248 kb on - strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.250 kb on + strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand at 459.251 kb on - strand, within DZA65_RS02080 at 459.251 kb on - strand, within DZA65_RS02080
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 458,392 - -1.0 458,392 - -0.1 458,419 + -1.3 458,419 + +0.7 458,433 - +0.3 458,520 + -1.1 458,822 - -1.7 458,842 + -0.7 458,843 - -0.3 458,860 + -0.3 458,912 + +0.3 458,913 - +0.3 458,913 - -0.6 458,914 + -0.7 458,914 + -1.5 458,915 - +0.5 458,915 - -0.1 458,915 - -0.3 458,915 - -0.3 458,915 - +0.5 458,915 - -0.0 458,940 - -0.9 458,940 - +0.7 458,940 - -1.4 458,940 - -0.8 458,965 + -0.7 458,965 + -0.5 458,965 + -1.6 458,965 + +0.1 458,965 + -0.1 458,975 + -2.2 458,976 - -0.3 458,976 - -0.8 458,976 - -0.9 458,984 + -0.1 458,999 - DZA65_RS02080 0.11 -1.1 459,078 + DZA65_RS02080 0.17 -1.3 459,079 - DZA65_RS02080 0.17 +0.7 459,248 - DZA65_RS02080 0.30 -0.3 459,248 - DZA65_RS02080 0.30 +1.5 459,248 - DZA65_RS02080 0.30 +0.2 459,248 - DZA65_RS02080 0.30 -0.8 459,250 + DZA65_RS02080 0.31 +0.4 459,250 + DZA65_RS02080 0.31 -0.5 459,250 + DZA65_RS02080 0.31 -1.7 459,250 + DZA65_RS02080 0.31 -0.1 459,250 + DZA65_RS02080 0.31 +1.5 459,251 - DZA65_RS02080 0.31 -0.7 459,251 - DZA65_RS02080 0.31 +0.5 459,251 - -0.3 459,251 - DZA65_RS02080 0.31 -1.1 459,251 - DZA65_RS02080 0.31 +0.9
Or see this region's nucleotide sequence