Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01985 and DZA65_RS01990 are separated by 162 nucleotides DZA65_RS01990 and DZA65_RS01995 are separated by 210 nucleotides DZA65_RS01995 and DZA65_RS02000 are separated by 119 nucleotides DZA65_RS02000 and DZA65_RS02005 are separated by 123 nucleotides
DZA65_RS01985: DZA65_RS01985 - ornithine carbamoyltransferase, at 436,887 to 437,903
_RS01985
DZA65_RS01990: DZA65_RS01990 - ribonuclease E inhibitor RraB, at 438,066 to 438,494
_RS01990
DZA65_RS01995: DZA65_RS01995 - DUF29 domain-containing protein, at 438,705 to 439,136
_RS01995
DZA65_RS02000: DZA65_RS02000 - hypothetical protein, at 439,256 to 439,990
_RS02000
DZA65_RS02005: DZA65_RS02005 - GNAT family N-acetyltransferase, at 440,114 to 440,617
_RS02005
Position (kb) 438
439
440 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 437.768 kb on + strand, within DZA65_RS01985 at 437.769 kb on - strand, within DZA65_RS01985 at 437.769 kb on - strand, within DZA65_RS01985 at 437.769 kb on - strand, within DZA65_RS01985 at 437.779 kb on + strand, within DZA65_RS01985 at 437.891 kb on - strand at 437.891 kb on - strand at 437.891 kb on - strand at 437.891 kb on - strand at 437.955 kb on + strand at 437.955 kb on + strand at 437.956 kb on - strand at 437.957 kb on + strand at 437.958 kb on - strand at 437.968 kb on - strand at 437.981 kb on + strand at 437.982 kb on - strand at 437.997 kb on + strand at 437.997 kb on + strand at 437.997 kb on + strand at 437.998 kb on - strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.036 kb on + strand at 438.036 kb on + strand at 438.036 kb on + strand at 438.036 kb on + strand at 438.036 kb on + strand at 438.037 kb on - strand at 438.037 kb on - strand at 438.116 kb on + strand, within DZA65_RS01990 at 438.116 kb on + strand, within DZA65_RS01990 at 438.116 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.160 kb on - strand, within DZA65_RS01990 at 438.160 kb on - strand, within DZA65_RS01990 at 438.160 kb on - strand, within DZA65_RS01990 at 438.160 kb on - strand at 438.160 kb on - strand, within DZA65_RS01990 at 438.160 kb on - strand, within DZA65_RS01990 at 438.160 kb on - strand, within DZA65_RS01990 at 438.161 kb on + strand, within DZA65_RS01990 at 438.161 kb on + strand, within DZA65_RS01990 at 438.161 kb on + strand, within DZA65_RS01990 at 438.162 kb on - strand, within DZA65_RS01990 at 438.162 kb on - strand, within DZA65_RS01990 at 438.218 kb on - strand, within DZA65_RS01990 at 438.218 kb on - strand, within DZA65_RS01990 at 438.303 kb on - strand, within DZA65_RS01990 at 438.303 kb on - strand, within DZA65_RS01990 at 438.332 kb on + strand, within DZA65_RS01990 at 438.332 kb on + strand, within DZA65_RS01990 at 438.333 kb on - strand, within DZA65_RS01990 at 438.333 kb on - strand, within DZA65_RS01990 at 438.405 kb on + strand, within DZA65_RS01990 at 438.405 kb on + strand, within DZA65_RS01990 at 438.405 kb on + strand, within DZA65_RS01990 at 438.405 kb on + strand, within DZA65_RS01990 at 438.406 kb on - strand, within DZA65_RS01990 at 438.406 kb on - strand at 438.406 kb on - strand, within DZA65_RS01990 at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.493 kb on - strand at 438.493 kb on - strand at 438.499 kb on + strand at 438.500 kb on - strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.518 kb on + strand at 438.518 kb on + strand at 438.518 kb on + strand at 438.518 kb on + strand at 438.519 kb on - strand at 438.519 kb on - strand at 438.523 kb on + strand at 438.523 kb on + strand at 438.523 kb on + strand at 438.523 kb on + strand at 438.524 kb on - strand at 438.524 kb on - strand at 438.524 kb on - strand at 438.524 kb on - strand at 438.524 kb on - strand at 438.524 kb on - strand at 438.546 kb on + strand at 438.546 kb on + strand at 438.547 kb on - strand at 438.573 kb on + strand at 438.573 kb on + strand at 438.575 kb on + strand at 438.576 kb on - strand at 438.591 kb on + strand at 438.591 kb on + strand at 438.591 kb on + strand at 438.592 kb on - strand at 438.592 kb on - strand at 438.592 kb on - strand at 438.666 kb on + strand at 438.666 kb on + strand at 438.666 kb on + strand at 438.666 kb on + strand at 438.666 kb on + strand at 438.667 kb on - strand at 438.667 kb on - strand at 438.667 kb on - strand at 438.667 kb on - strand at 438.676 kb on + strand at 438.677 kb on - strand at 438.677 kb on - strand at 438.677 kb on - strand at 438.677 kb on - strand at 438.677 kb on - strand at 438.677 kb on - strand at 438.687 kb on + strand at 438.687 kb on + strand at 438.687 kb on + strand at 438.688 kb on - strand at 438.688 kb on - strand at 438.688 kb on - strand at 438.688 kb on - strand at 438.688 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.733 kb on - strand at 438.873 kb on - strand, within DZA65_RS01995 at 438.873 kb on - strand, within DZA65_RS01995 at 438.895 kb on - strand, within DZA65_RS01995 at 438.928 kb on + strand, within DZA65_RS01995 at 438.928 kb on + strand, within DZA65_RS01995 at 438.928 kb on + strand, within DZA65_RS01995 at 438.928 kb on + strand, within DZA65_RS01995 at 438.928 kb on + strand, within DZA65_RS01995 at 438.932 kb on + strand, within DZA65_RS01995 at 438.932 kb on + strand, within DZA65_RS01995 at 438.932 kb on + strand, within DZA65_RS01995 at 438.932 kb on + strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.934 kb on + strand, within DZA65_RS01995 at 438.934 kb on + strand, within DZA65_RS01995 at 438.935 kb on - strand, within DZA65_RS01995 at 438.935 kb on - strand, within DZA65_RS01995 at 438.935 kb on - strand, within DZA65_RS01995 at 438.935 kb on - strand, within DZA65_RS01995 at 439.004 kb on + strand, within DZA65_RS01995 at 439.020 kb on + strand, within DZA65_RS01995 at 439.033 kb on + strand, within DZA65_RS01995 at 439.034 kb on - strand, within DZA65_RS01995 at 439.034 kb on - strand, within DZA65_RS01995 at 439.113 kb on - strand at 439.139 kb on + strand at 439.139 kb on + strand at 439.140 kb on - strand at 439.140 kb on - strand at 439.140 kb on - strand at 439.140 kb on - strand at 439.144 kb on + strand at 439.145 kb on - strand at 439.206 kb on + strand at 439.211 kb on - strand at 439.221 kb on + strand at 439.239 kb on + strand at 439.240 kb on - strand at 439.382 kb on + strand, within DZA65_RS02000 at 439.486 kb on + strand, within DZA65_RS02000 at 439.486 kb on + strand, within DZA65_RS02000 at 439.522 kb on + strand, within DZA65_RS02000 at 439.523 kb on - strand, within DZA65_RS02000 at 439.525 kb on + strand, within DZA65_RS02000 at 439.526 kb on - strand, within DZA65_RS02000 at 439.534 kb on + strand, within DZA65_RS02000 at 439.534 kb on + strand, within DZA65_RS02000 at 439.535 kb on - strand, within DZA65_RS02000 at 439.554 kb on + strand, within DZA65_RS02000 at 439.555 kb on - strand, within DZA65_RS02000 at 439.555 kb on - strand, within DZA65_RS02000 at 439.555 kb on - strand, within DZA65_RS02000 at 439.559 kb on + strand, within DZA65_RS02000 at 439.559 kb on + strand, within DZA65_RS02000 at 439.560 kb on - strand, within DZA65_RS02000 at 439.560 kb on - strand, within DZA65_RS02000 at 439.560 kb on - strand, within DZA65_RS02000 at 439.897 kb on + strand, within DZA65_RS02000 at 439.909 kb on + strand, within DZA65_RS02000 at 439.917 kb on + strand at 439.918 kb on - strand at 439.923 kb on - strand at 439.923 kb on - strand at 439.976 kb on + strand at 439.977 kb on - strand at 439.992 kb on + strand at 439.993 kb on - strand at 439.993 kb on - strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.998 kb on - strand at 439.998 kb on - strand at 439.998 kb on - strand at 440.020 kb on + strand at 440.020 kb on + strand at 440.029 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.116 kb on - strand at 440.117 kb on + strand at 440.117 kb on + strand at 440.117 kb on + strand at 440.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 437,768 + DZA65_RS01985 0.87 +1.1 437,769 - DZA65_RS01985 0.87 -0.4 437,769 - DZA65_RS01985 0.87 -1.5 437,769 - DZA65_RS01985 0.87 +1.3 437,779 + DZA65_RS01985 0.88 +0.9 437,891 - +1.5 437,891 - -0.1 437,891 - -0.2 437,891 - -0.6 437,955 + -0.4 437,955 + -2.0 437,956 - +0.4 437,957 + +0.1 437,958 - -0.4 437,968 - -0.6 437,981 + -0.1 437,982 - -0.3 437,997 + -1.3 437,997 + -1.1 437,997 + -0.2 437,998 - -0.1 438,030 + -0.5 438,030 + -1.1 438,030 + +0.7 438,030 + -1.6 438,030 + +0.2 438,030 + -1.0 438,030 + -0.3 438,030 + -0.3 438,031 - -0.6 438,031 - -0.1 438,031 - +0.7 438,031 - -0.3 438,031 - -0.4 438,031 - -1.0 438,031 - -0.3 438,036 + +0.5 438,036 + -0.6 438,036 + -0.5 438,036 + +0.2 438,036 + +1.2 438,037 - +0.8 438,037 - -1.6 438,116 + DZA65_RS01990 0.12 -0.8 438,116 + DZA65_RS01990 0.12 -0.9 438,116 + DZA65_RS01990 0.12 +0.4 438,159 + DZA65_RS01990 0.22 -0.4 438,159 + DZA65_RS01990 0.22 -1.0 438,159 + DZA65_RS01990 0.22 -1.1 438,159 + DZA65_RS01990 0.22 -0.1 438,159 + DZA65_RS01990 0.22 -0.6 438,159 + DZA65_RS01990 0.22 -1.0 438,159 + DZA65_RS01990 0.22 -0.6 438,159 + DZA65_RS01990 0.22 -1.7 438,159 + DZA65_RS01990 0.22 -1.5 438,160 - DZA65_RS01990 0.22 -0.9 438,160 - DZA65_RS01990 0.22 +0.1 438,160 - DZA65_RS01990 0.22 -0.6 438,160 - +0.1 438,160 - DZA65_RS01990 0.22 -0.5 438,160 - DZA65_RS01990 0.22 -0.2 438,160 - DZA65_RS01990 0.22 +0.6 438,161 + DZA65_RS01990 0.22 -0.5 438,161 + DZA65_RS01990 0.22 -0.8 438,161 + DZA65_RS01990 0.22 -0.6 438,162 - DZA65_RS01990 0.22 +0.4 438,162 - DZA65_RS01990 0.22 -2.4 438,218 - DZA65_RS01990 0.35 -0.6 438,218 - DZA65_RS01990 0.35 -1.4 438,303 - DZA65_RS01990 0.55 -1.3 438,303 - DZA65_RS01990 0.55 -0.6 438,332 + DZA65_RS01990 0.62 -0.7 438,332 + DZA65_RS01990 0.62 -0.9 438,333 - DZA65_RS01990 0.62 -0.0 438,333 - DZA65_RS01990 0.62 -0.6 438,405 + DZA65_RS01990 0.79 +0.1 438,405 + DZA65_RS01990 0.79 -1.1 438,405 + DZA65_RS01990 0.79 +0.2 438,405 + DZA65_RS01990 0.79 -0.5 438,406 - DZA65_RS01990 0.79 +1.1 438,406 - +1.7 438,406 - DZA65_RS01990 0.79 -1.0 438,462 + -0.2 438,462 + -0.6 438,462 + +0.4 438,462 + -0.4 438,462 + +0.1 438,462 + -1.6 438,462 + +0.2 438,462 + -1.1 438,463 - -1.2 438,463 - -1.5 438,463 - -1.3 438,463 - -1.1 438,463 - -1.1 438,463 - -1.2 438,463 - +0.1 438,463 - +2.1 438,463 - +1.1 438,463 - -0.3 438,493 - +2.0 438,493 - -0.5 438,499 + -0.4 438,500 - +1.7 438,502 + +0.4 438,502 + -0.4 438,502 + -1.0 438,502 + +0.1 438,502 + +0.2 438,502 + -0.9 438,502 + -1.6 438,502 + -0.7 438,502 + +1.1 438,502 + -2.0 438,503 - -1.5 438,503 - +0.7 438,503 - -0.3 438,503 - -0.6 438,503 - +0.7 438,503 - +0.5 438,503 - +0.5 438,518 + -0.3 438,518 + -0.6 438,518 + -1.4 438,518 + +0.4 438,519 - -0.9 438,519 - +0.3 438,523 + -0.6 438,523 + +0.1 438,523 + -0.5 438,523 + +0.9 438,524 - -0.5 438,524 - -1.9 438,524 - -0.8 438,524 - -1.2 438,524 - -0.1 438,524 - -1.6 438,546 + -1.5 438,546 + -1.0 438,547 - -0.9 438,573 + -0.2 438,573 + -0.3 438,575 + -0.6 438,576 - +0.5 438,591 + -0.7 438,591 + +1.7 438,591 + +1.4 438,592 - -0.1 438,592 - -0.5 438,592 - -0.6 438,666 + -1.2 438,666 + -0.5 438,666 + -0.3 438,666 + -1.9 438,666 + +0.9 438,667 - -0.2 438,667 - -0.9 438,667 - -0.7 438,667 - -1.9 438,676 + -1.4 438,677 - -0.2 438,677 - -2.7 438,677 - -0.5 438,677 - +0.6 438,677 - +0.2 438,677 - -0.7 438,687 + +1.7 438,687 + +1.0 438,687 + -1.3 438,688 - -0.9 438,688 - -1.1 438,688 - -1.0 438,688 - +0.1 438,688 - +0.1 438,705 - -0.7 438,705 - -0.9 438,705 - -3.1 438,705 - -0.1 438,705 - +0.4 438,705 - -0.3 438,705 - +0.7 438,705 - -0.9 438,733 - -1.4 438,873 - DZA65_RS01995 0.39 -0.7 438,873 - DZA65_RS01995 0.39 -0.5 438,895 - DZA65_RS01995 0.44 +0.4 438,928 + DZA65_RS01995 0.52 +1.1 438,928 + DZA65_RS01995 0.52 -0.6 438,928 + DZA65_RS01995 0.52 -0.3 438,928 + DZA65_RS01995 0.52 +0.1 438,928 + DZA65_RS01995 0.52 +0.7 438,932 + DZA65_RS01995 0.53 +0.9 438,932 + DZA65_RS01995 0.53 -0.3 438,932 + DZA65_RS01995 0.53 +0.4 438,932 + DZA65_RS01995 0.53 -0.1 438,933 - DZA65_RS01995 0.53 +1.0 438,933 - DZA65_RS01995 0.53 +0.6 438,933 - DZA65_RS01995 0.53 -1.0 438,933 - DZA65_RS01995 0.53 -1.7 438,933 - DZA65_RS01995 0.53 -1.1 438,933 - DZA65_RS01995 0.53 -0.7 438,934 + DZA65_RS01995 0.53 +0.8 438,934 + DZA65_RS01995 0.53 +0.3 438,935 - DZA65_RS01995 0.53 -2.0 438,935 - DZA65_RS01995 0.53 +0.4 438,935 - DZA65_RS01995 0.53 -0.1 438,935 - DZA65_RS01995 0.53 -1.2 439,004 + DZA65_RS01995 0.69 +0.1 439,020 + DZA65_RS01995 0.73 +0.1 439,033 + DZA65_RS01995 0.76 -0.1 439,034 - DZA65_RS01995 0.76 +1.1 439,034 - DZA65_RS01995 0.76 +0.3 439,113 - +0.7 439,139 + -0.8 439,139 + -1.3 439,140 - -0.9 439,140 - -0.9 439,140 - -1.8 439,140 - -0.7 439,144 + -0.9 439,145 - -0.7 439,206 + -0.3 439,211 - -0.7 439,221 + -0.2 439,239 + +0.4 439,240 - +0.3 439,382 + DZA65_RS02000 0.17 +0.8 439,486 + DZA65_RS02000 0.31 -0.1 439,486 + DZA65_RS02000 0.31 +0.6 439,522 + DZA65_RS02000 0.36 -1.7 439,523 - DZA65_RS02000 0.36 -0.4 439,525 + DZA65_RS02000 0.37 +0.9 439,526 - DZA65_RS02000 0.37 -0.3 439,534 + DZA65_RS02000 0.38 +0.2 439,534 + DZA65_RS02000 0.38 -0.3 439,535 - DZA65_RS02000 0.38 -0.3 439,554 + DZA65_RS02000 0.41 +0.3 439,555 - DZA65_RS02000 0.41 -1.3 439,555 - DZA65_RS02000 0.41 +0.9 439,555 - DZA65_RS02000 0.41 -1.7 439,559 + DZA65_RS02000 0.41 -0.3 439,559 + DZA65_RS02000 0.41 -2.1 439,560 - DZA65_RS02000 0.41 -0.1 439,560 - DZA65_RS02000 0.41 -1.1 439,560 - DZA65_RS02000 0.41 +1.7 439,897 + DZA65_RS02000 0.87 +2.4 439,909 + DZA65_RS02000 0.89 +0.1 439,917 + -0.6 439,918 - +0.9 439,923 - -0.7 439,923 - -1.3 439,976 + +0.2 439,977 - -1.3 439,992 + +0.2 439,993 - +0.1 439,993 - -0.1 439,997 + -0.6 439,997 + -2.6 439,997 + +0.3 439,997 + -0.7 439,997 + -0.2 439,997 + -1.8 439,998 - -0.1 439,998 - +0.1 439,998 - -0.3 440,020 + -1.5 440,020 + +0.7 440,029 + -1.7 440,115 + -1.3 440,115 + -0.9 440,115 + +0.7 440,115 + -0.4 440,115 + +0.1 440,115 + -0.8 440,115 + -0.5 440,115 + -1.2 440,115 + -0.9 440,116 - -1.5 440,117 + +0.2 440,117 + +0.1 440,117 + -0.5 440,117 + -0.9
Or see this region's nucleotide sequence