Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01645 and DZA65_RS01650 are separated by 235 nucleotides DZA65_RS01650 and DZA65_RS01655 overlap by 4 nucleotides DZA65_RS01655 and DZA65_RS01660 are separated by 93 nucleotides
DZA65_RS01645: DZA65_RS01645 - aerobic respiration two-component sensor histidine kinase ArcB, at 357,707 to 360,046
_RS01645
DZA65_RS01650: DZA65_RS01650 - isoprenoid biosynthesis glyoxalase ElbB, at 360,282 to 360,935
_RS01650
DZA65_RS01655: DZA65_RS01655 - monofunctional biosynthetic peptidoglycan transglycosylase, at 360,932 to 361,681
_RS01655
DZA65_RS01660: DZA65_RS01660 - alginate lyase family protein, at 361,775 to 363,076
_RS01660
Position (kb) 360
361 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 359.292 kb on + strand, within DZA65_RS01645 at 359.357 kb on - strand, within DZA65_RS01645 at 359.395 kb on + strand, within DZA65_RS01645 at 359.395 kb on + strand, within DZA65_RS01645 at 359.490 kb on - strand, within DZA65_RS01645 at 359.535 kb on + strand, within DZA65_RS01645 at 359.535 kb on + strand, within DZA65_RS01645 at 359.535 kb on + strand, within DZA65_RS01645 at 359.535 kb on + strand, within DZA65_RS01645 at 359.535 kb on + strand, within DZA65_RS01645 at 359.536 kb on - strand, within DZA65_RS01645 at 359.588 kb on - strand, within DZA65_RS01645 at 359.588 kb on - strand, within DZA65_RS01645 at 359.630 kb on + strand, within DZA65_RS01645 at 359.631 kb on - strand, within DZA65_RS01645 at 359.644 kb on + strand, within DZA65_RS01645 at 359.726 kb on + strand, within DZA65_RS01645 at 359.726 kb on + strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.727 kb on - strand, within DZA65_RS01645 at 359.937 kb on + strand at 359.938 kb on - strand at 359.958 kb on + strand at 359.958 kb on + strand at 359.958 kb on + strand at 360.074 kb on + strand at 360.074 kb on + strand at 360.074 kb on + strand at 360.074 kb on + strand at 360.074 kb on + strand at 360.075 kb on - strand at 360.075 kb on - strand at 360.075 kb on - strand at 360.075 kb on - strand at 360.075 kb on - strand at 360.075 kb on - strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.099 kb on + strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.100 kb on - strand at 360.124 kb on + strand at 360.124 kb on + strand at 360.130 kb on + strand at 360.144 kb on + strand at 360.145 kb on - strand at 360.145 kb on - strand at 360.173 kb on + strand at 360.173 kb on + strand at 360.173 kb on + strand at 360.174 kb on - strand at 360.174 kb on - strand at 360.174 kb on - strand at 360.180 kb on + strand at 360.180 kb on + strand at 360.180 kb on + strand at 360.180 kb on + strand at 360.181 kb on - strand at 360.181 kb on - strand at 360.181 kb on - strand at 360.181 kb on - strand at 360.196 kb on - strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.221 kb on + strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.222 kb on - strand at 360.252 kb on + strand at 360.253 kb on - strand at 360.253 kb on - strand at 360.253 kb on - strand at 360.261 kb on + strand at 360.261 kb on + strand at 360.262 kb on - strand at 360.276 kb on + strand at 360.276 kb on + strand at 360.276 kb on + strand at 360.276 kb on + strand at 360.277 kb on - strand at 360.277 kb on - strand at 360.277 kb on - strand at 360.301 kb on + strand at 360.302 kb on - strand at 360.321 kb on + strand at 360.489 kb on - strand, within DZA65_RS01650 at 360.638 kb on - strand, within DZA65_RS01650 at 360.641 kb on + strand, within DZA65_RS01650 at 360.642 kb on - strand, within DZA65_RS01650 at 360.642 kb on - strand, within DZA65_RS01650 at 360.642 kb on - strand, within DZA65_RS01650 at 360.657 kb on - strand, within DZA65_RS01650 at 360.674 kb on - strand, within DZA65_RS01650 at 360.681 kb on - strand, within DZA65_RS01650 at 360.681 kb on - strand, within DZA65_RS01650 at 360.698 kb on + strand, within DZA65_RS01650 at 360.698 kb on + strand, within DZA65_RS01650 at 360.698 kb on + strand, within DZA65_RS01650 at 360.699 kb on - strand, within DZA65_RS01650 at 360.699 kb on - strand, within DZA65_RS01650 at 360.699 kb on - strand, within DZA65_RS01650 at 360.699 kb on - strand, within DZA65_RS01650 at 360.699 kb on - strand, within DZA65_RS01650 at 360.734 kb on + strand, within DZA65_RS01650 at 360.735 kb on - strand, within DZA65_RS01650 at 360.735 kb on - strand, within DZA65_RS01650 at 360.755 kb on + strand, within DZA65_RS01650 at 360.756 kb on - strand, within DZA65_RS01650 at 360.770 kb on - strand, within DZA65_RS01650 at 360.805 kb on + strand, within DZA65_RS01650 at 360.805 kb on + strand, within DZA65_RS01650 at 360.806 kb on - strand, within DZA65_RS01650 at 360.806 kb on - strand, within DZA65_RS01650 at 360.806 kb on - strand, within DZA65_RS01650 at 360.806 kb on - strand, within DZA65_RS01650 at 360.855 kb on + strand, within DZA65_RS01650 at 360.855 kb on + strand, within DZA65_RS01650 at 360.855 kb on + strand, within DZA65_RS01650 at 360.855 kb on + strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.856 kb on - strand, within DZA65_RS01650 at 360.948 kb on + strand at 360.976 kb on - strand at 361.113 kb on + strand, within DZA65_RS01655 at 361.113 kb on + strand, within DZA65_RS01655 at 361.113 kb on + strand, within DZA65_RS01655 at 361.114 kb on - strand, within DZA65_RS01655 at 361.114 kb on - strand, within DZA65_RS01655 at 361.114 kb on - strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.130 kb on + strand, within DZA65_RS01655 at 361.131 kb on - strand, within DZA65_RS01655 at 361.131 kb on - strand, within DZA65_RS01655 at 361.131 kb on - strand, within DZA65_RS01655 at 361.261 kb on + strand, within DZA65_RS01655 at 361.262 kb on - strand, within DZA65_RS01655 at 361.262 kb on - strand at 361.262 kb on - strand, within DZA65_RS01655 at 361.267 kb on + strand, within DZA65_RS01655 at 361.267 kb on + strand, within DZA65_RS01655 at 361.267 kb on + strand, within DZA65_RS01655 at 361.268 kb on - strand, within DZA65_RS01655 at 361.268 kb on - strand, within DZA65_RS01655 at 361.268 kb on - strand, within DZA65_RS01655 at 361.268 kb on - strand, within DZA65_RS01655 at 361.268 kb on - strand, within DZA65_RS01655 at 361.364 kb on - strand, within DZA65_RS01655 at 361.404 kb on + strand at 361.420 kb on + strand, within DZA65_RS01655 at 361.421 kb on - strand, within DZA65_RS01655 at 361.421 kb on - strand, within DZA65_RS01655 at 361.421 kb on - strand, within DZA65_RS01655 at 361.433 kb on + strand, within DZA65_RS01655 at 361.441 kb on + strand, within DZA65_RS01655 at 361.441 kb on + strand at 361.442 kb on - strand, within DZA65_RS01655 at 361.473 kb on + strand, within DZA65_RS01655 at 361.473 kb on + strand, within DZA65_RS01655 at 361.474 kb on - strand, within DZA65_RS01655 at 361.474 kb on - strand, within DZA65_RS01655 at 361.474 kb on - strand, within DZA65_RS01655 at 361.474 kb on - strand, within DZA65_RS01655 at 361.474 kb on - strand, within DZA65_RS01655 at 361.501 kb on + strand, within DZA65_RS01655 at 361.501 kb on + strand, within DZA65_RS01655 at 361.501 kb on + strand, within DZA65_RS01655 at 361.502 kb on - strand, within DZA65_RS01655 at 361.502 kb on - strand, within DZA65_RS01655 at 361.502 kb on - strand, within DZA65_RS01655 at 361.502 kb on - strand, within DZA65_RS01655 at 361.595 kb on + strand, within DZA65_RS01655 at 361.595 kb on + strand, within DZA65_RS01655 at 361.596 kb on - strand, within DZA65_RS01655 at 361.596 kb on - strand, within DZA65_RS01655 at 361.596 kb on - strand, within DZA65_RS01655 at 361.676 kb on + strand at 361.676 kb on + strand at 361.699 kb on + strand at 361.699 kb on + strand at 361.700 kb on - strand at 361.700 kb on - strand at 361.740 kb on - strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.773 kb on + strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.774 kb on - strand at 361.781 kb on + strand at 361.786 kb on + strand at 361.787 kb on - strand at 361.787 kb on - strand at 361.868 kb on + strand at 361.868 kb on + strand at 361.868 kb on + strand at 361.869 kb on - strand at 361.869 kb on - strand at 361.869 kb on - strand at 361.869 kb on - strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.873 kb on - strand at 361.902 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 359,292 + DZA65_RS01645 0.68 -1.5 359,357 - DZA65_RS01645 0.71 +3.3 359,395 + DZA65_RS01645 0.72 +1.7 359,395 + DZA65_RS01645 0.72 +0.1 359,490 - DZA65_RS01645 0.76 -2.2 359,535 + DZA65_RS01645 0.78 +0.2 359,535 + DZA65_RS01645 0.78 -0.5 359,535 + DZA65_RS01645 0.78 -0.9 359,535 + DZA65_RS01645 0.78 -1.1 359,535 + DZA65_RS01645 0.78 +0.4 359,536 - DZA65_RS01645 0.78 +0.5 359,588 - DZA65_RS01645 0.80 -0.9 359,588 - DZA65_RS01645 0.80 -0.1 359,630 + DZA65_RS01645 0.82 +0.1 359,631 - DZA65_RS01645 0.82 -1.1 359,644 + DZA65_RS01645 0.83 +1.4 359,726 + DZA65_RS01645 0.86 +0.4 359,726 + DZA65_RS01645 0.86 +0.1 359,727 - DZA65_RS01645 0.86 -1.6 359,727 - DZA65_RS01645 0.86 +0.1 359,727 - DZA65_RS01645 0.86 -0.9 359,727 - DZA65_RS01645 0.86 -0.9 359,727 - DZA65_RS01645 0.86 +1.1 359,727 - DZA65_RS01645 0.86 -0.9 359,937 + -0.3 359,938 - -0.2 359,958 + +0.1 359,958 + -0.4 359,958 + -2.0 360,074 + -0.0 360,074 + +0.7 360,074 + -0.3 360,074 + +0.5 360,074 + +0.4 360,075 - -0.2 360,075 - +0.3 360,075 - +0.1 360,075 - +0.4 360,075 - +0.2 360,075 - +0.5 360,099 + -0.7 360,099 + -0.4 360,099 + +0.1 360,099 + -0.3 360,099 + -0.2 360,099 + -0.8 360,099 + -0.1 360,100 - +0.6 360,100 - +0.0 360,100 - +0.3 360,100 - -0.9 360,100 - +0.1 360,100 - -0.7 360,100 - -1.7 360,100 - -0.1 360,100 - +0.9 360,100 - -0.2 360,124 + +1.0 360,124 + -0.3 360,130 + -0.1 360,144 + -1.9 360,145 - -0.9 360,145 - +0.0 360,173 + -0.5 360,173 + -1.1 360,173 + -0.1 360,174 - +0.5 360,174 - -0.5 360,174 - +0.4 360,180 + -0.2 360,180 + +1.2 360,180 + -0.1 360,180 + -0.2 360,181 - +0.7 360,181 - -0.2 360,181 - +0.5 360,181 - -0.1 360,196 - -0.1 360,221 + -0.1 360,221 + -2.3 360,221 + +0.2 360,221 + +0.3 360,221 + -1.1 360,221 + -1.9 360,221 + +0.1 360,222 - +0.6 360,222 - -0.1 360,222 - -0.8 360,222 - +0.1 360,222 - -1.0 360,222 - -1.8 360,222 - -1.6 360,252 + -1.3 360,253 - -0.1 360,253 - -0.9 360,253 - +0.4 360,261 + -0.4 360,261 + -2.4 360,262 - -2.4 360,276 + -0.9 360,276 + -1.5 360,276 + +0.1 360,276 + -1.2 360,277 - -0.5 360,277 - -0.2 360,277 - -0.6 360,301 + -0.9 360,302 - -0.8 360,321 + +0.1 360,489 - DZA65_RS01650 0.32 -0.5 360,638 - DZA65_RS01650 0.54 +0.1 360,641 + DZA65_RS01650 0.55 +0.5 360,642 - DZA65_RS01650 0.55 -1.3 360,642 - DZA65_RS01650 0.55 -0.2 360,642 - DZA65_RS01650 0.55 -1.3 360,657 - DZA65_RS01650 0.57 +0.1 360,674 - DZA65_RS01650 0.60 -0.6 360,681 - DZA65_RS01650 0.61 +1.2 360,681 - DZA65_RS01650 0.61 -2.1 360,698 + DZA65_RS01650 0.64 -1.3 360,698 + DZA65_RS01650 0.64 -0.8 360,698 + DZA65_RS01650 0.64 -1.0 360,699 - DZA65_RS01650 0.64 -0.6 360,699 - DZA65_RS01650 0.64 -0.9 360,699 - DZA65_RS01650 0.64 -1.2 360,699 - DZA65_RS01650 0.64 -0.1 360,699 - DZA65_RS01650 0.64 -0.6 360,734 + DZA65_RS01650 0.69 +0.5 360,735 - DZA65_RS01650 0.69 -0.8 360,735 - DZA65_RS01650 0.69 +0.4 360,755 + DZA65_RS01650 0.72 -0.6 360,756 - DZA65_RS01650 0.72 +0.7 360,770 - DZA65_RS01650 0.75 -0.5 360,805 + DZA65_RS01650 0.80 +1.1 360,805 + DZA65_RS01650 0.80 +2.4 360,806 - DZA65_RS01650 0.80 -0.8 360,806 - DZA65_RS01650 0.80 -1.0 360,806 - DZA65_RS01650 0.80 +0.2 360,806 - DZA65_RS01650 0.80 -0.2 360,855 + DZA65_RS01650 0.88 -0.3 360,855 + DZA65_RS01650 0.88 +0.7 360,855 + DZA65_RS01650 0.88 +0.4 360,855 + DZA65_RS01650 0.88 +0.7 360,856 - DZA65_RS01650 0.88 -0.1 360,856 - DZA65_RS01650 0.88 +0.3 360,856 - DZA65_RS01650 0.88 -0.9 360,856 - DZA65_RS01650 0.88 -2.2 360,856 - DZA65_RS01650 0.88 -1.1 360,856 - DZA65_RS01650 0.88 -1.1 360,856 - DZA65_RS01650 0.88 -0.3 360,948 + -1.8 360,976 - -0.7 361,113 + DZA65_RS01655 0.24 -0.4 361,113 + DZA65_RS01655 0.24 -0.9 361,113 + DZA65_RS01655 0.24 -1.1 361,114 - DZA65_RS01655 0.24 +0.3 361,114 - DZA65_RS01655 0.24 -0.3 361,114 - DZA65_RS01655 0.24 +0.2 361,130 + DZA65_RS01655 0.26 -0.3 361,130 + DZA65_RS01655 0.26 +0.1 361,130 + DZA65_RS01655 0.26 -0.8 361,130 + DZA65_RS01655 0.26 -0.5 361,130 + DZA65_RS01655 0.26 -0.5 361,130 + DZA65_RS01655 0.26 -1.5 361,130 + DZA65_RS01655 0.26 -0.6 361,131 - DZA65_RS01655 0.27 -0.6 361,131 - DZA65_RS01655 0.27 -0.2 361,131 - DZA65_RS01655 0.27 +0.2 361,261 + DZA65_RS01655 0.44 -0.0 361,262 - DZA65_RS01655 0.44 -0.5 361,262 - +0.4 361,262 - DZA65_RS01655 0.44 -0.6 361,267 + DZA65_RS01655 0.45 +0.2 361,267 + DZA65_RS01655 0.45 +0.0 361,267 + DZA65_RS01655 0.45 +0.1 361,268 - DZA65_RS01655 0.45 -0.3 361,268 - DZA65_RS01655 0.45 +0.5 361,268 - DZA65_RS01655 0.45 -0.8 361,268 - DZA65_RS01655 0.45 -0.5 361,268 - DZA65_RS01655 0.45 +0.7 361,364 - DZA65_RS01655 0.58 +0.9 361,404 + -0.3 361,420 + DZA65_RS01655 0.65 -0.6 361,421 - DZA65_RS01655 0.65 +1.2 361,421 - DZA65_RS01655 0.65 -1.6 361,421 - DZA65_RS01655 0.65 +0.2 361,433 + DZA65_RS01655 0.67 -1.5 361,441 + DZA65_RS01655 0.68 +0.3 361,441 + +0.7 361,442 - DZA65_RS01655 0.68 -0.9 361,473 + DZA65_RS01655 0.72 +2.3 361,473 + DZA65_RS01655 0.72 -1.4 361,474 - DZA65_RS01655 0.72 -2.2 361,474 - DZA65_RS01655 0.72 +0.9 361,474 - DZA65_RS01655 0.72 +1.0 361,474 - DZA65_RS01655 0.72 +0.5 361,474 - DZA65_RS01655 0.72 -1.6 361,501 + DZA65_RS01655 0.76 +0.1 361,501 + DZA65_RS01655 0.76 -0.3 361,501 + DZA65_RS01655 0.76 -0.3 361,502 - DZA65_RS01655 0.76 -0.3 361,502 - DZA65_RS01655 0.76 +0.4 361,502 - DZA65_RS01655 0.76 -0.8 361,502 - DZA65_RS01655 0.76 -0.6 361,595 + DZA65_RS01655 0.88 +1.3 361,595 + DZA65_RS01655 0.88 -0.6 361,596 - DZA65_RS01655 0.89 -1.2 361,596 - DZA65_RS01655 0.89 -0.9 361,596 - DZA65_RS01655 0.89 +0.5 361,676 + +0.7 361,676 + +1.2 361,699 + -0.9 361,699 + -1.3 361,700 - +0.7 361,700 - -0.3 361,740 - -0.3 361,773 + +1.7 361,773 + +2.3 361,773 + -1.9 361,773 + -0.2 361,773 + +0.2 361,773 + +0.0 361,773 + +0.9 361,773 + -1.2 361,773 + -0.4 361,773 + -2.3 361,773 + +0.1 361,773 + +0.1 361,773 + -0.2 361,773 + -0.6 361,773 + -0.9 361,774 - -1.3 361,774 - -0.6 361,774 - -0.4 361,774 - -1.5 361,774 - +1.7 361,774 - +0.7 361,774 - +0.5 361,774 - -1.2 361,774 - -1.3 361,774 - +0.2 361,774 - -2.1 361,774 - -0.4 361,774 - +0.0 361,781 + -0.3 361,786 + +1.0 361,787 - -1.3 361,787 - -0.5 361,868 + -0.2 361,868 + -0.5 361,868 + -0.1 361,869 - +0.3 361,869 - -2.1 361,869 - -1.3 361,869 - +1.3 361,872 + -1.2 361,872 + +0.1 361,872 + +0.7 361,872 + +0.0 361,873 - +1.9 361,902 + -0.5
Or see this region's nucleotide sequence