Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01615 and DZA65_RS01620 are separated by 4 nucleotides DZA65_RS01620 and DZA65_RS01625 are separated by 92 nucleotides DZA65_RS01625 and DZA65_RS01630 are separated by 68 nucleotides
DZA65_RS01615: DZA65_RS01615 - stringent starvation protein A, at 348,534 to 349,175
_RS01615
DZA65_RS01620: DZA65_RS01620 - ClpXP protease specificity-enhancing factor, at 349,180 to 349,677
_RS01620
DZA65_RS01625: DZA65_RS01625 - hypothetical protein, at 349,770 to 350,009
_RS01625
DZA65_RS01630: DZA65_RS01630 - FAD-dependent oxidoreductase, at 350,078 to 351,496
_RS01630
Position (kb) 349
350
351 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 348.807 kb on + strand, within DZA65_RS01615 at 348.864 kb on + strand, within DZA65_RS01615 at 348.864 kb on + strand, within DZA65_RS01615 at 348.975 kb on + strand, within DZA65_RS01615 at 348.975 kb on + strand, within DZA65_RS01615 at 348.975 kb on + strand, within DZA65_RS01615 at 348.976 kb on - strand, within DZA65_RS01615 at 349.011 kb on + strand, within DZA65_RS01615 at 349.012 kb on - strand, within DZA65_RS01615 at 349.012 kb on - strand, within DZA65_RS01615 at 349.012 kb on - strand, within DZA65_RS01615 at 349.089 kb on + strand, within DZA65_RS01615 at 349.089 kb on + strand, within DZA65_RS01615 at 349.089 kb on + strand, within DZA65_RS01615 at 349.089 kb on + strand, within DZA65_RS01615 at 349.090 kb on - strand, within DZA65_RS01615 at 349.090 kb on - strand, within DZA65_RS01615 at 349.213 kb on + strand at 349.214 kb on - strand at 349.217 kb on + strand at 349.217 kb on + strand at 349.217 kb on + strand at 349.217 kb on + strand at 349.218 kb on - strand at 349.218 kb on - strand at 349.218 kb on - strand at 349.218 kb on - strand at 349.218 kb on - strand at 349.218 kb on - strand at 349.218 kb on - strand at 349.231 kb on + strand, within DZA65_RS01620 at 349.231 kb on + strand, within DZA65_RS01620 at 349.231 kb on + strand, within DZA65_RS01620 at 349.231 kb on + strand, within DZA65_RS01620 at 349.232 kb on - strand, within DZA65_RS01620 at 349.338 kb on - strand, within DZA65_RS01620 at 349.338 kb on - strand, within DZA65_RS01620 at 349.338 kb on - strand, within DZA65_RS01620 at 349.341 kb on + strand, within DZA65_RS01620 at 349.341 kb on + strand, within DZA65_RS01620 at 349.341 kb on + strand, within DZA65_RS01620 at 349.388 kb on + strand, within DZA65_RS01620 at 349.388 kb on + strand, within DZA65_RS01620 at 349.388 kb on + strand, within DZA65_RS01620 at 349.388 kb on + strand, within DZA65_RS01620 at 349.389 kb on - strand, within DZA65_RS01620 at 349.389 kb on - strand, within DZA65_RS01620 at 349.389 kb on - strand, within DZA65_RS01620 at 349.389 kb on - strand, within DZA65_RS01620 at 349.459 kb on + strand, within DZA65_RS01620 at 349.459 kb on + strand, within DZA65_RS01620 at 349.459 kb on + strand, within DZA65_RS01620 at 349.460 kb on - strand, within DZA65_RS01620 at 349.460 kb on - strand, within DZA65_RS01620 at 349.651 kb on - strand at 349.675 kb on + strand at 349.675 kb on + strand at 349.675 kb on + strand at 349.717 kb on - strand at 349.743 kb on + strand at 349.743 kb on + strand at 349.744 kb on - strand at 349.749 kb on - strand at 349.749 kb on - strand at 349.749 kb on - strand at 349.770 kb on - strand at 349.779 kb on + strand at 349.780 kb on - strand at 349.817 kb on + strand, within DZA65_RS01625 at 349.818 kb on - strand at 349.840 kb on - strand, within DZA65_RS01625 at 349.840 kb on - strand, within DZA65_RS01625 at 349.863 kb on + strand, within DZA65_RS01625 at 349.920 kb on + strand, within DZA65_RS01625 at 349.920 kb on + strand, within DZA65_RS01625 at 349.921 kb on - strand, within DZA65_RS01625 at 349.921 kb on - strand, within DZA65_RS01625 at 349.923 kb on - strand, within DZA65_RS01625 at 349.928 kb on + strand, within DZA65_RS01625 at 349.928 kb on + strand, within DZA65_RS01625 at 349.928 kb on + strand, within DZA65_RS01625 at 349.929 kb on - strand, within DZA65_RS01625 at 349.931 kb on + strand, within DZA65_RS01625 at 349.931 kb on + strand, within DZA65_RS01625 at 349.931 kb on + strand, within DZA65_RS01625 at 349.931 kb on + strand, within DZA65_RS01625 at 349.932 kb on - strand, within DZA65_RS01625 at 349.932 kb on - strand, within DZA65_RS01625 at 349.932 kb on - strand, within DZA65_RS01625 at 349.941 kb on + strand, within DZA65_RS01625 at 349.941 kb on + strand, within DZA65_RS01625 at 349.996 kb on + strand at 349.996 kb on + strand at 349.997 kb on - strand at 349.997 kb on - strand at 349.997 kb on - strand at 349.997 kb on - strand at 349.998 kb on + strand at 349.998 kb on + strand at 349.999 kb on - strand at 350.000 kb on + strand at 350.001 kb on - strand at 350.001 kb on - strand at 350.001 kb on - strand at 350.007 kb on + strand at 350.008 kb on - strand at 350.011 kb on - strand at 350.037 kb on - strand at 350.064 kb on + strand at 350.065 kb on - strand at 350.079 kb on + strand at 350.079 kb on + strand at 350.080 kb on - strand at 350.091 kb on + strand at 350.091 kb on + strand at 350.091 kb on + strand at 350.091 kb on + strand at 350.091 kb on + strand at 350.092 kb on - strand at 350.092 kb on - strand at 350.092 kb on - strand at 350.092 kb on - strand at 350.092 kb on - strand at 350.116 kb on + strand at 350.411 kb on + strand, within DZA65_RS01630 at 350.412 kb on - strand, within DZA65_RS01630 at 350.412 kb on - strand, within DZA65_RS01630 at 350.426 kb on - strand, within DZA65_RS01630 at 350.555 kb on + strand, within DZA65_RS01630 at 350.555 kb on + strand, within DZA65_RS01630 at 350.555 kb on + strand, within DZA65_RS01630 at 350.555 kb on + strand, within DZA65_RS01630 at 350.556 kb on - strand, within DZA65_RS01630 at 350.556 kb on - strand, within DZA65_RS01630 at 350.584 kb on + strand, within DZA65_RS01630 at 350.584 kb on + strand, within DZA65_RS01630 at 350.585 kb on - strand, within DZA65_RS01630 at 350.652 kb on + strand, within DZA65_RS01630 at 350.652 kb on + strand, within DZA65_RS01630 at 350.652 kb on + strand, within DZA65_RS01630 at 350.652 kb on + strand, within DZA65_RS01630 at 350.653 kb on - strand, within DZA65_RS01630 at 350.653 kb on - strand, within DZA65_RS01630 at 350.653 kb on - strand, within DZA65_RS01630 at 350.653 kb on - strand, within DZA65_RS01630 at 350.653 kb on - strand, within DZA65_RS01630 at 350.653 kb on - strand, within DZA65_RS01630 at 350.653 kb on - strand, within DZA65_RS01630 at 350.724 kb on + strand, within DZA65_RS01630 at 350.724 kb on + strand, within DZA65_RS01630 at 350.724 kb on + strand, within DZA65_RS01630 at 350.724 kb on + strand, within DZA65_RS01630 at 350.724 kb on + strand, within DZA65_RS01630 at 350.724 kb on + strand, within DZA65_RS01630 at 350.773 kb on - strand, within DZA65_RS01630 at 350.773 kb on - strand, within DZA65_RS01630 at 350.773 kb on - strand, within DZA65_RS01630 at 350.773 kb on - strand, within DZA65_RS01630 at 350.773 kb on - strand, within DZA65_RS01630 at 350.773 kb on - strand, within DZA65_RS01630 at 350.773 kb on - strand, within DZA65_RS01630 at 350.802 kb on + strand, within DZA65_RS01630 at 350.802 kb on + strand, within DZA65_RS01630 at 350.803 kb on - strand, within DZA65_RS01630 at 350.803 kb on - strand, within DZA65_RS01630 at 350.851 kb on + strand, within DZA65_RS01630 at 350.852 kb on - strand, within DZA65_RS01630 at 350.973 kb on + strand, within DZA65_RS01630 at 350.973 kb on + strand, within DZA65_RS01630 at 350.974 kb on - strand, within DZA65_RS01630 at 350.987 kb on + strand, within DZA65_RS01630
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 348,807 + DZA65_RS01615 0.43 -1.6 348,864 + DZA65_RS01615 0.51 -2.2 348,864 + DZA65_RS01615 0.51 -0.9 348,975 + DZA65_RS01615 0.69 -0.1 348,975 + DZA65_RS01615 0.69 +1.3 348,975 + DZA65_RS01615 0.69 -1.9 348,976 - DZA65_RS01615 0.69 -2.0 349,011 + DZA65_RS01615 0.74 -0.4 349,012 - DZA65_RS01615 0.74 -1.1 349,012 - DZA65_RS01615 0.74 -0.0 349,012 - DZA65_RS01615 0.74 +0.1 349,089 + DZA65_RS01615 0.86 +1.5 349,089 + DZA65_RS01615 0.86 -0.1 349,089 + DZA65_RS01615 0.86 -1.9 349,089 + DZA65_RS01615 0.86 -1.6 349,090 - DZA65_RS01615 0.87 +1.0 349,090 - DZA65_RS01615 0.87 -0.3 349,213 + -1.2 349,214 - -1.3 349,217 + +1.1 349,217 + -1.1 349,217 + +0.1 349,217 + +0.8 349,218 - -1.8 349,218 - -1.3 349,218 - +0.2 349,218 - -0.3 349,218 - +0.3 349,218 - -1.2 349,218 - +0.4 349,231 + DZA65_RS01620 0.10 -1.8 349,231 + DZA65_RS01620 0.10 +1.7 349,231 + DZA65_RS01620 0.10 -0.5 349,231 + DZA65_RS01620 0.10 -0.8 349,232 - DZA65_RS01620 0.10 -1.1 349,338 - DZA65_RS01620 0.32 -2.7 349,338 - DZA65_RS01620 0.32 -1.5 349,338 - DZA65_RS01620 0.32 +0.1 349,341 + DZA65_RS01620 0.32 +0.6 349,341 + DZA65_RS01620 0.32 -0.5 349,341 + DZA65_RS01620 0.32 +1.4 349,388 + DZA65_RS01620 0.42 +0.5 349,388 + DZA65_RS01620 0.42 -1.3 349,388 + DZA65_RS01620 0.42 -0.2 349,388 + DZA65_RS01620 0.42 -1.5 349,389 - DZA65_RS01620 0.42 +0.1 349,389 - DZA65_RS01620 0.42 -2.1 349,389 - DZA65_RS01620 0.42 -0.9 349,389 - DZA65_RS01620 0.42 +0.9 349,459 + DZA65_RS01620 0.56 +0.5 349,459 + DZA65_RS01620 0.56 -0.7 349,459 + DZA65_RS01620 0.56 -0.8 349,460 - DZA65_RS01620 0.56 -0.8 349,460 - DZA65_RS01620 0.56 +0.4 349,651 - +0.0 349,675 + +0.5 349,675 + -0.0 349,675 + -1.9 349,717 - +0.3 349,743 + -0.6 349,743 + +0.8 349,744 - -0.5 349,749 - -0.8 349,749 - -1.6 349,749 - +0.2 349,770 - -0.3 349,779 + -0.6 349,780 - -1.1 349,817 + DZA65_RS01625 0.20 -0.9 349,818 - -0.3 349,840 - DZA65_RS01625 0.29 +1.4 349,840 - DZA65_RS01625 0.29 -0.8 349,863 + DZA65_RS01625 0.39 -0.1 349,920 + DZA65_RS01625 0.62 +0.4 349,920 + DZA65_RS01625 0.62 -0.3 349,921 - DZA65_RS01625 0.63 +1.2 349,921 - DZA65_RS01625 0.63 +3.3 349,923 - DZA65_RS01625 0.64 +0.1 349,928 + DZA65_RS01625 0.66 -0.5 349,928 + DZA65_RS01625 0.66 -0.6 349,928 + DZA65_RS01625 0.66 -0.6 349,929 - DZA65_RS01625 0.66 -0.6 349,931 + DZA65_RS01625 0.67 -0.5 349,931 + DZA65_RS01625 0.67 -0.6 349,931 + DZA65_RS01625 0.67 -1.0 349,931 + DZA65_RS01625 0.67 +0.3 349,932 - DZA65_RS01625 0.68 +0.4 349,932 - DZA65_RS01625 0.68 -0.1 349,932 - DZA65_RS01625 0.68 +0.7 349,941 + DZA65_RS01625 0.71 -0.1 349,941 + DZA65_RS01625 0.71 -1.2 349,996 + -0.6 349,996 + -1.2 349,997 - -1.3 349,997 - +0.4 349,997 - +1.7 349,997 - -0.6 349,998 + -1.5 349,998 + -0.7 349,999 - -0.3 350,000 + -0.6 350,001 - -0.3 350,001 - -0.1 350,001 - -0.8 350,007 + -0.6 350,008 - -0.3 350,011 - +0.6 350,037 - -0.2 350,064 + +0.5 350,065 - +1.0 350,079 + -0.6 350,079 + -0.5 350,080 - -0.9 350,091 + -0.6 350,091 + -1.6 350,091 + +0.5 350,091 + -1.1 350,091 + -1.6 350,092 - -1.0 350,092 - -1.1 350,092 - +0.1 350,092 - -2.7 350,092 - +0.1 350,116 + -0.8 350,411 + DZA65_RS01630 0.23 -0.3 350,412 - DZA65_RS01630 0.24 -1.3 350,412 - DZA65_RS01630 0.24 +0.9 350,426 - DZA65_RS01630 0.25 +0.1 350,555 + DZA65_RS01630 0.34 -1.0 350,555 + DZA65_RS01630 0.34 -1.4 350,555 + DZA65_RS01630 0.34 -0.1 350,555 + DZA65_RS01630 0.34 +0.7 350,556 - DZA65_RS01630 0.34 -0.2 350,556 - DZA65_RS01630 0.34 +0.2 350,584 + DZA65_RS01630 0.36 +0.5 350,584 + DZA65_RS01630 0.36 -2.4 350,585 - DZA65_RS01630 0.36 -0.1 350,652 + DZA65_RS01630 0.40 +0.1 350,652 + DZA65_RS01630 0.40 +1.1 350,652 + DZA65_RS01630 0.40 +0.0 350,652 + DZA65_RS01630 0.40 +0.4 350,653 - DZA65_RS01630 0.41 +0.4 350,653 - DZA65_RS01630 0.41 +1.7 350,653 - DZA65_RS01630 0.41 -0.3 350,653 - DZA65_RS01630 0.41 -0.9 350,653 - DZA65_RS01630 0.41 -0.7 350,653 - DZA65_RS01630 0.41 -0.0 350,653 - DZA65_RS01630 0.41 -0.6 350,724 + DZA65_RS01630 0.46 +0.1 350,724 + DZA65_RS01630 0.46 -1.2 350,724 + DZA65_RS01630 0.46 -0.6 350,724 + DZA65_RS01630 0.46 +1.1 350,724 + DZA65_RS01630 0.46 +1.7 350,724 + DZA65_RS01630 0.46 -0.3 350,773 - DZA65_RS01630 0.49 +1.0 350,773 - DZA65_RS01630 0.49 -0.4 350,773 - DZA65_RS01630 0.49 -1.1 350,773 - DZA65_RS01630 0.49 -0.9 350,773 - DZA65_RS01630 0.49 +0.7 350,773 - DZA65_RS01630 0.49 -0.1 350,773 - DZA65_RS01630 0.49 -1.0 350,802 + DZA65_RS01630 0.51 -1.5 350,802 + DZA65_RS01630 0.51 -0.1 350,803 - DZA65_RS01630 0.51 +0.7 350,803 - DZA65_RS01630 0.51 -0.9 350,851 + DZA65_RS01630 0.54 -2.2 350,852 - DZA65_RS01630 0.55 -0.2 350,973 + DZA65_RS01630 0.63 +0.7 350,973 + DZA65_RS01630 0.63 +0.5 350,974 - DZA65_RS01630 0.63 -0.1 350,987 + DZA65_RS01630 0.64 -1.1
Or see this region's nucleotide sequence