Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01570

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01560 and DZA65_RS01565 overlap by 8 nucleotidesDZA65_RS01565 and DZA65_RS01570 are separated by 132 nucleotidesDZA65_RS01570 and DZA65_RS01575 are separated by 53 nucleotides DZA65_RS01560: DZA65_RS01560 - phospholipid-binding protein MlaC, at 339,919 to 340,572 _RS01560 DZA65_RS01565: DZA65_RS01565 - lipid asymmetry maintenance protein MlaB, at 340,565 to 340,867 _RS01565 DZA65_RS01570: DZA65_RS01570 - BolA family iron metabolism protein IbaG, at 341,000 to 341,254 _RS01570 DZA65_RS01575: DZA65_RS01575 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 341,308 to 342,570 _RS01575 Position (kb) 340 341 342Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 340.092 kb on + strand, within DZA65_RS01560at 340.132 kb on + strand, within DZA65_RS01560at 340.132 kb on + strand, within DZA65_RS01560at 340.142 kb on + strand, within DZA65_RS01560at 340.142 kb on + strand, within DZA65_RS01560at 340.175 kb on - strand, within DZA65_RS01560at 340.177 kb on + strand, within DZA65_RS01560at 340.177 kb on + strand, within DZA65_RS01560at 340.177 kb on + strand, within DZA65_RS01560at 340.177 kb on + strand, within DZA65_RS01560at 340.177 kb on + strand, within DZA65_RS01560at 340.177 kb on + strand, within DZA65_RS01560at 340.178 kb on - strand, within DZA65_RS01560at 340.178 kb on - strand, within DZA65_RS01560at 340.178 kb on - strand, within DZA65_RS01560at 340.178 kb on - strand, within DZA65_RS01560at 340.178 kb on - strand, within DZA65_RS01560at 340.179 kb on + strand, within DZA65_RS01560at 340.179 kb on + strand, within DZA65_RS01560at 340.179 kb on + strand, within DZA65_RS01560at 340.179 kb on + strand, within DZA65_RS01560at 340.179 kb on + strand, within DZA65_RS01560at 340.179 kb on + strand, within DZA65_RS01560at 340.179 kb on + strand, within DZA65_RS01560at 340.179 kb on + strand, within DZA65_RS01560at 340.179 kb on + strand, within DZA65_RS01560at 340.179 kb on + strand, within DZA65_RS01560at 340.179 kb on + strand, within DZA65_RS01560at 340.180 kb on - strand, within DZA65_RS01560at 340.180 kb on - strand, within DZA65_RS01560at 340.180 kb on - strand, within DZA65_RS01560at 340.180 kb on - strand, within DZA65_RS01560at 340.180 kb on - strand, within DZA65_RS01560at 340.180 kb on - strand, within DZA65_RS01560at 340.180 kb on - strand, within DZA65_RS01560at 340.210 kb on + strand, within DZA65_RS01560at 340.210 kb on + strand, within DZA65_RS01560at 340.210 kb on + strand, within DZA65_RS01560at 340.210 kb on + strand, within DZA65_RS01560at 340.231 kb on + strand, within DZA65_RS01560at 340.231 kb on + strandat 340.247 kb on - strand, within DZA65_RS01560at 340.247 kb on - strand, within DZA65_RS01560at 340.267 kb on + strand, within DZA65_RS01560at 340.267 kb on + strand, within DZA65_RS01560at 340.267 kb on + strand, within DZA65_RS01560at 340.267 kb on + strand, within DZA65_RS01560at 340.267 kb on + strand, within DZA65_RS01560at 340.267 kb on + strand, within DZA65_RS01560at 340.267 kb on + strand, within DZA65_RS01560at 340.267 kb on + strand, within DZA65_RS01560at 340.268 kb on - strand, within DZA65_RS01560at 340.268 kb on - strand, within DZA65_RS01560at 340.268 kb on - strand, within DZA65_RS01560at 340.268 kb on - strand, within DZA65_RS01560at 340.342 kb on - strand, within DZA65_RS01560at 340.342 kb on - strand, within DZA65_RS01560at 340.423 kb on + strand, within DZA65_RS01560at 340.423 kb on + strand, within DZA65_RS01560at 340.423 kb on + strand, within DZA65_RS01560at 340.515 kb on + strandat 340.516 kb on - strandat 340.516 kb on - strandat 340.516 kb on - strandat 340.516 kb on - strandat 340.516 kb on - strandat 340.633 kb on + strand, within DZA65_RS01565at 340.633 kb on + strand, within DZA65_RS01565at 340.634 kb on - strand, within DZA65_RS01565at 340.634 kb on - strand, within DZA65_RS01565at 340.748 kb on + strand, within DZA65_RS01565at 340.787 kb on - strand, within DZA65_RS01565at 340.824 kb on + strand, within DZA65_RS01565at 340.824 kb on + strand, within DZA65_RS01565at 340.824 kb on + strand, within DZA65_RS01565at 340.824 kb on + strand, within DZA65_RS01565at 340.824 kb on + strand, within DZA65_RS01565at 340.824 kb on + strand, within DZA65_RS01565at 340.824 kb on + strand, within DZA65_RS01565at 340.824 kb on + strand, within DZA65_RS01565at 340.825 kb on - strand, within DZA65_RS01565at 340.825 kb on - strand, within DZA65_RS01565at 340.825 kb on - strand, within DZA65_RS01565at 340.825 kb on - strand, within DZA65_RS01565at 340.825 kb on - strand, within DZA65_RS01565at 340.826 kb on + strand, within DZA65_RS01565at 340.826 kb on + strand, within DZA65_RS01565at 340.826 kb on + strand, within DZA65_RS01565at 340.826 kb on + strand, within DZA65_RS01565at 340.826 kb on + strand, within DZA65_RS01565at 340.826 kb on + strand, within DZA65_RS01565at 340.826 kb on + strand, within DZA65_RS01565at 340.826 kb on + strand, within DZA65_RS01565at 340.826 kb on + strand, within DZA65_RS01565at 340.826 kb on + strandat 340.826 kb on + strand, within DZA65_RS01565at 340.827 kb on - strand, within DZA65_RS01565at 340.827 kb on - strand, within DZA65_RS01565at 340.827 kb on - strand, within DZA65_RS01565at 340.827 kb on - strand, within DZA65_RS01565at 340.827 kb on - strand, within DZA65_RS01565at 340.827 kb on - strand, within DZA65_RS01565at 340.827 kb on - strand, within DZA65_RS01565at 340.827 kb on - strand, within DZA65_RS01565at 340.827 kb on - strand, within DZA65_RS01565at 340.828 kb on + strand, within DZA65_RS01565at 340.828 kb on + strand, within DZA65_RS01565at 340.828 kb on + strand, within DZA65_RS01565at 340.828 kb on + strand, within DZA65_RS01565at 340.829 kb on - strand, within DZA65_RS01565at 340.829 kb on - strand, within DZA65_RS01565at 340.829 kb on - strand, within DZA65_RS01565at 340.829 kb on - strand, within DZA65_RS01565at 340.932 kb on + strandat 340.932 kb on + strandat 340.953 kb on + strandat 340.953 kb on + strandat 340.953 kb on + strandat 340.953 kb on + strandat 340.953 kb on + strandat 340.953 kb on + strandat 340.953 kb on + strandat 340.953 kb on + strandat 340.953 kb on + strandat 340.953 kb on + strandat 340.953 kb on + strandat 340.953 kb on + strandat 340.958 kb on + strandat 340.958 kb on + strandat 340.958 kb on + strandat 340.958 kb on + strandat 340.970 kb on + strandat 340.970 kb on + strandat 340.970 kb on + strandat 340.970 kb on + strandat 340.986 kb on + strandat 340.986 kb on + strandat 340.986 kb on + strandat 340.986 kb on + strandat 340.986 kb on + strandat 341.017 kb on + strandat 341.097 kb on + strand, within DZA65_RS01570at 341.097 kb on + strand, within DZA65_RS01570at 341.097 kb on + strand, within DZA65_RS01570at 341.097 kb on + strand, within DZA65_RS01570at 341.097 kb on + strand, within DZA65_RS01570at 341.165 kb on + strand, within DZA65_RS01570at 341.165 kb on + strand, within DZA65_RS01570at 341.165 kb on + strand, within DZA65_RS01570at 341.165 kb on + strand, within DZA65_RS01570at 341.165 kb on + strand, within DZA65_RS01570at 341.165 kb on + strand, within DZA65_RS01570at 341.207 kb on + strand, within DZA65_RS01570at 341.207 kb on + strand, within DZA65_RS01570at 341.207 kb on + strand, within DZA65_RS01570at 341.207 kb on + strand, within DZA65_RS01570at 341.207 kb on + strand, within DZA65_RS01570at 341.209 kb on + strand, within DZA65_RS01570at 341.209 kb on + strand, within DZA65_RS01570at 341.209 kb on + strand, within DZA65_RS01570at 341.209 kb on + strand, within DZA65_RS01570at 341.209 kb on + strand, within DZA65_RS01570at 341.209 kb on + strand, within DZA65_RS01570at 341.209 kb on + strand, within DZA65_RS01570at 341.252 kb on + strandat 341.252 kb on + strandat 341.252 kb on + strandat 341.252 kb on + strandat 341.277 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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340,092 + DZA65_RS01560 0.26 -0.1
340,132 + DZA65_RS01560 0.33 -0.2
340,132 + DZA65_RS01560 0.33 -0.6
340,142 + DZA65_RS01560 0.34 -0.9
340,142 + DZA65_RS01560 0.34 -1.5
340,175 - DZA65_RS01560 0.39 -2.5
340,177 + DZA65_RS01560 0.39 -0.4
340,177 + DZA65_RS01560 0.39 +0.3
340,177 + DZA65_RS01560 0.39 -0.9
340,177 + DZA65_RS01560 0.39 -0.3
340,177 + DZA65_RS01560 0.39 -1.0
340,177 + DZA65_RS01560 0.39 +0.5
340,178 - DZA65_RS01560 0.40 -1.6
340,178 - DZA65_RS01560 0.40 +0.4
340,178 - DZA65_RS01560 0.40 -0.5
340,178 - DZA65_RS01560 0.40 -0.3
340,178 - DZA65_RS01560 0.40 -1.5
340,179 + DZA65_RS01560 0.40 +0.5
340,179 + DZA65_RS01560 0.40 -0.3
340,179 + DZA65_RS01560 0.40 +0.1
340,179 + DZA65_RS01560 0.40 -2.9
340,179 + DZA65_RS01560 0.40 -0.0
340,179 + DZA65_RS01560 0.40 -2.5
340,179 + DZA65_RS01560 0.40 -1.5
340,179 + DZA65_RS01560 0.40 -0.0
340,179 + DZA65_RS01560 0.40 -0.9
340,179 + DZA65_RS01560 0.40 -1.5
340,179 + DZA65_RS01560 0.40 -0.9
340,180 - DZA65_RS01560 0.40 -1.1
340,180 - DZA65_RS01560 0.40 -2.2
340,180 - DZA65_RS01560 0.40 -3.1
340,180 - DZA65_RS01560 0.40 -0.3
340,180 - DZA65_RS01560 0.40 -0.8
340,180 - DZA65_RS01560 0.40 -1.5
340,180 - DZA65_RS01560 0.40 +1.0
340,210 + DZA65_RS01560 0.44 -0.9
340,210 + DZA65_RS01560 0.44 -0.9
340,210 + DZA65_RS01560 0.44 +1.1
340,210 + DZA65_RS01560 0.44 -0.0
340,231 + DZA65_RS01560 0.48 -0.2
340,231 + +1.1
340,247 - DZA65_RS01560 0.50 -0.9
340,247 - DZA65_RS01560 0.50 -1.5
340,267 + DZA65_RS01560 0.53 -1.7
340,267 + DZA65_RS01560 0.53 -0.2
340,267 + DZA65_RS01560 0.53 +0.4
340,267 + DZA65_RS01560 0.53 -1.2
340,267 + DZA65_RS01560 0.53 -0.0
340,267 + DZA65_RS01560 0.53 -1.7
340,267 + DZA65_RS01560 0.53 -0.3
340,267 + DZA65_RS01560 0.53 -1.9
340,268 - DZA65_RS01560 0.53 -0.7
340,268 - DZA65_RS01560 0.53 -1.2
340,268 - DZA65_RS01560 0.53 -1.6
340,268 - DZA65_RS01560 0.53 +0.3
340,342 - DZA65_RS01560 0.65 -0.3
340,342 - DZA65_RS01560 0.65 +0.5
340,423 + DZA65_RS01560 0.77 +0.1
340,423 + DZA65_RS01560 0.77 +0.3
340,423 + DZA65_RS01560 0.77 +0.4
340,515 + -0.0
340,516 - -0.6
340,516 - +0.3
340,516 - -0.3
340,516 - -0.3
340,516 - -2.4
340,633 + DZA65_RS01565 0.22 -0.2
340,633 + DZA65_RS01565 0.22 -1.5
340,634 - DZA65_RS01565 0.23 -1.9
340,634 - DZA65_RS01565 0.23 +0.1
340,748 + DZA65_RS01565 0.60 +0.7
340,787 - DZA65_RS01565 0.73 +0.3
340,824 + DZA65_RS01565 0.85 -1.2
340,824 + DZA65_RS01565 0.85 -0.5
340,824 + DZA65_RS01565 0.85 -0.5
340,824 + DZA65_RS01565 0.85 -0.2
340,824 + DZA65_RS01565 0.85 -0.6
340,824 + DZA65_RS01565 0.85 +0.1
340,824 + DZA65_RS01565 0.85 +0.1
340,824 + DZA65_RS01565 0.85 +0.2
340,825 - DZA65_RS01565 0.86 -0.7
340,825 - DZA65_RS01565 0.86 -1.3
340,825 - DZA65_RS01565 0.86 -0.5
340,825 - DZA65_RS01565 0.86 -1.0
340,825 - DZA65_RS01565 0.86 -1.1
340,826 + DZA65_RS01565 0.86 -0.5
340,826 + DZA65_RS01565 0.86 -1.7
340,826 + DZA65_RS01565 0.86 +0.1
340,826 + DZA65_RS01565 0.86 -0.9
340,826 + DZA65_RS01565 0.86 +0.5
340,826 + DZA65_RS01565 0.86 -1.0
340,826 + DZA65_RS01565 0.86 -0.3
340,826 + DZA65_RS01565 0.86 +0.5
340,826 + DZA65_RS01565 0.86 -0.6
340,826 + +0.1
340,826 + DZA65_RS01565 0.86 +0.4
340,827 - DZA65_RS01565 0.86 -0.5
340,827 - DZA65_RS01565 0.86 +2.7
340,827 - DZA65_RS01565 0.86 -0.6
340,827 - DZA65_RS01565 0.86 +0.4
340,827 - DZA65_RS01565 0.86 -0.1
340,827 - DZA65_RS01565 0.86 -2.4
340,827 - DZA65_RS01565 0.86 +1.4
340,827 - DZA65_RS01565 0.86 -0.9
340,827 - DZA65_RS01565 0.86 -0.4
340,828 + DZA65_RS01565 0.87 -0.9
340,828 + DZA65_RS01565 0.87 -0.9
340,828 + DZA65_RS01565 0.87 +1.7
340,828 + DZA65_RS01565 0.87 -0.4
340,829 - DZA65_RS01565 0.87 -0.8
340,829 - DZA65_RS01565 0.87 -0.1
340,829 - DZA65_RS01565 0.87 +0.7
340,829 - DZA65_RS01565 0.87 -1.0
340,932 + -0.2
340,932 + -0.6
340,953 + -0.7
340,953 + +0.0
340,953 + +0.4
340,953 + -1.5
340,953 + -1.4
340,953 + -0.6
340,953 + +0.7
340,953 + +2.3
340,953 + +0.1
340,953 + +0.5
340,953 + +1.2
340,953 + +0.1
340,958 + -0.2
340,958 + +1.7
340,958 + +0.0
340,958 + -0.9
340,970 + -0.1
340,970 + -0.5
340,970 + -0.1
340,970 + -0.9
340,986 + -0.7
340,986 + +1.0
340,986 + -0.4
340,986 + +3.3
340,986 + -0.1
341,017 + -0.1
341,097 + DZA65_RS01570 0.38 -0.9
341,097 + DZA65_RS01570 0.38 -0.6
341,097 + DZA65_RS01570 0.38 -1.1
341,097 + DZA65_RS01570 0.38 -0.9
341,097 + DZA65_RS01570 0.38 +0.7
341,165 + DZA65_RS01570 0.65 -0.8
341,165 + DZA65_RS01570 0.65 -1.2
341,165 + DZA65_RS01570 0.65 +0.7
341,165 + DZA65_RS01570 0.65 -1.4
341,165 + DZA65_RS01570 0.65 +1.7
341,165 + DZA65_RS01570 0.65 -2.0
341,207 + DZA65_RS01570 0.81 -0.3
341,207 + DZA65_RS01570 0.81 -0.9
341,207 + DZA65_RS01570 0.81 -0.6
341,207 + DZA65_RS01570 0.81 -0.6
341,207 + DZA65_RS01570 0.81 -0.1
341,209 + DZA65_RS01570 0.82 -0.3
341,209 + DZA65_RS01570 0.82 -0.6
341,209 + DZA65_RS01570 0.82 -0.9
341,209 + DZA65_RS01570 0.82 -0.6
341,209 + DZA65_RS01570 0.82 -1.8
341,209 + DZA65_RS01570 0.82 +1.7
341,209 + DZA65_RS01570 0.82 -0.6
341,252 + -0.5
341,252 + +0.5
341,252 + -0.8
341,252 + -0.3
341,277 + +0.4

Or see this region's nucleotide sequence