Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01490 and DZA65_RS01495 overlap by 4 nucleotides DZA65_RS01495 and DZA65_RS01500 are separated by 145 nucleotides DZA65_RS01500 and DZA65_RS01505 are separated by 92 nucleotides DZA65_RS01505 and DZA65_RS01510 are separated by 24 nucleotides
DZA65_RS01490: DZA65_RS01490 - PTS phosphocarrier protein NPr, at 329,311 to 329,583
_RS01490
DZA65_RS01495: DZA65_RS01495 - RNase adapter RapZ, at 329,580 to 330,434
_RS01495
DZA65_RS01500: DZA65_RS01500 - PTS IIA-like nitrogen regulatory protein PtsN, at 330,580 to 331,068
_RS01500
DZA65_RS01505: DZA65_RS01505 - ribosome hibernation promoting factor, at 331,161 to 331,448
_RS01505
DZA65_RS01510: DZA65_RS01510 - RNA polymerase factor sigma-54, at 331,473 to 332,906
_RS01510
Position (kb) 330
331
332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 329.604 kb on - strand at 329.645 kb on - strand at 329.645 kb on - strand at 329.666 kb on + strand, within DZA65_RS01495 at 329.668 kb on + strand, within DZA65_RS01495 at 329.668 kb on + strand, within DZA65_RS01495 at 329.668 kb on + strand, within DZA65_RS01495 at 329.668 kb on + strand, within DZA65_RS01495 at 329.669 kb on - strand, within DZA65_RS01495 at 329.669 kb on - strand at 329.669 kb on - strand, within DZA65_RS01495 at 329.712 kb on - strand, within DZA65_RS01495 at 329.712 kb on - strand, within DZA65_RS01495 at 329.716 kb on + strand, within DZA65_RS01495 at 329.716 kb on + strand at 329.717 kb on - strand, within DZA65_RS01495 at 329.717 kb on - strand, within DZA65_RS01495 at 329.717 kb on - strand at 329.761 kb on + strand, within DZA65_RS01495 at 329.762 kb on - strand, within DZA65_RS01495 at 329.776 kb on + strand, within DZA65_RS01495 at 329.776 kb on + strand, within DZA65_RS01495 at 329.776 kb on + strand, within DZA65_RS01495 at 329.776 kb on + strand, within DZA65_RS01495 at 329.776 kb on + strand, within DZA65_RS01495 at 329.777 kb on - strand, within DZA65_RS01495 at 329.777 kb on - strand, within DZA65_RS01495 at 329.777 kb on - strand, within DZA65_RS01495 at 329.900 kb on - strand, within DZA65_RS01495 at 329.900 kb on - strand, within DZA65_RS01495 at 329.900 kb on - strand, within DZA65_RS01495 at 329.900 kb on - strand, within DZA65_RS01495 at 329.900 kb on - strand, within DZA65_RS01495 at 329.900 kb on - strand, within DZA65_RS01495 at 330.029 kb on + strand, within DZA65_RS01495 at 330.030 kb on - strand, within DZA65_RS01495 at 330.030 kb on - strand at 330.089 kb on + strand, within DZA65_RS01495 at 330.164 kb on + strand, within DZA65_RS01495 at 330.164 kb on + strand at 330.165 kb on - strand, within DZA65_RS01495 at 330.291 kb on - strand, within DZA65_RS01495 at 330.356 kb on - strand at 330.356 kb on - strand at 330.482 kb on + strand at 330.483 kb on - strand at 330.483 kb on - strand at 330.483 kb on - strand at 330.483 kb on - strand at 330.486 kb on + strand at 330.487 kb on - strand at 330.487 kb on - strand at 330.487 kb on - strand at 330.539 kb on + strand at 330.539 kb on + strand at 330.539 kb on + strand at 330.539 kb on + strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.540 kb on - strand at 330.702 kb on + strand, within DZA65_RS01500 at 330.702 kb on + strand, within DZA65_RS01500 at 330.702 kb on + strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.703 kb on - strand, within DZA65_RS01500 at 330.706 kb on + strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.707 kb on - strand, within DZA65_RS01500 at 330.717 kb on + strand, within DZA65_RS01500 at 330.717 kb on + strand, within DZA65_RS01500 at 330.718 kb on - strand, within DZA65_RS01500 at 330.831 kb on + strand, within DZA65_RS01500 at 330.832 kb on - strand, within DZA65_RS01500 at 330.832 kb on - strand, within DZA65_RS01500 at 330.895 kb on - strand, within DZA65_RS01500 at 330.895 kb on - strand, within DZA65_RS01500 at 330.895 kb on - strand, within DZA65_RS01500 at 331.011 kb on + strand, within DZA65_RS01500 at 331.017 kb on + strand, within DZA65_RS01500 at 331.017 kb on + strand, within DZA65_RS01500 at 331.018 kb on - strand, within DZA65_RS01500 at 331.018 kb on - strand, within DZA65_RS01500 at 331.042 kb on - strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.071 kb on + strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.072 kb on - strand at 331.081 kb on + strand at 331.081 kb on + strand at 331.082 kb on - strand at 331.082 kb on - strand at 331.082 kb on - strand at 331.119 kb on + strand at 331.120 kb on - strand at 331.120 kb on - strand at 331.120 kb on - strand at 331.184 kb on + strand at 331.184 kb on + strand at 331.185 kb on - strand at 331.185 kb on - strand at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.237 kb on + strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.238 kb on - strand, within DZA65_RS01505 at 331.241 kb on + strand, within DZA65_RS01505 at 331.242 kb on - strand, within DZA65_RS01505 at 331.242 kb on - strand, within DZA65_RS01505 at 331.242 kb on - strand, within DZA65_RS01505 at 331.336 kb on + strand, within DZA65_RS01505 at 331.336 kb on + strand, within DZA65_RS01505 at 331.337 kb on - strand, within DZA65_RS01505 at 331.337 kb on - strand, within DZA65_RS01505 at 331.349 kb on + strand, within DZA65_RS01505 at 331.350 kb on - strand, within DZA65_RS01505 at 331.350 kb on - strand, within DZA65_RS01505 at 331.360 kb on + strand, within DZA65_RS01505 at 331.361 kb on - strand, within DZA65_RS01505 at 331.439 kb on + strand at 331.439 kb on + strand at 331.440 kb on - strand at 331.448 kb on + strand at 331.467 kb on + strand at 331.468 kb on - strand at 331.488 kb on - strand at 331.488 kb on - strand at 331.512 kb on + strand at 331.512 kb on + strand at 331.513 kb on - strand at 331.513 kb on - strand at 331.513 kb on - strand at 331.513 kb on - strand at 331.706 kb on - strand, within DZA65_RS01510 at 331.706 kb on - strand, within DZA65_RS01510 at 331.706 kb on - strand, within DZA65_RS01510 at 331.722 kb on - strand, within DZA65_RS01510 at 331.733 kb on + strand, within DZA65_RS01510 at 331.814 kb on + strand, within DZA65_RS01510 at 331.815 kb on - strand, within DZA65_RS01510 at 331.815 kb on - strand, within DZA65_RS01510 at 332.000 kb on - strand, within DZA65_RS01510
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 329,604 - +0.1 329,645 - +0.1 329,645 - +0.4 329,666 + DZA65_RS01495 0.10 +0.4 329,668 + DZA65_RS01495 0.10 +0.1 329,668 + DZA65_RS01495 0.10 +0.0 329,668 + DZA65_RS01495 0.10 +1.1 329,668 + DZA65_RS01495 0.10 -0.7 329,669 - DZA65_RS01495 0.10 -0.3 329,669 - +1.7 329,669 - DZA65_RS01495 0.10 -0.3 329,712 - DZA65_RS01495 0.15 -0.6 329,712 - DZA65_RS01495 0.15 +0.2 329,716 + DZA65_RS01495 0.16 -0.0 329,716 + -0.3 329,717 - DZA65_RS01495 0.16 -0.1 329,717 - DZA65_RS01495 0.16 +0.4 329,717 - +2.7 329,761 + DZA65_RS01495 0.21 -0.6 329,762 - DZA65_RS01495 0.21 -0.5 329,776 + DZA65_RS01495 0.23 +1.7 329,776 + DZA65_RS01495 0.23 +0.4 329,776 + DZA65_RS01495 0.23 +0.7 329,776 + DZA65_RS01495 0.23 +1.7 329,776 + DZA65_RS01495 0.23 -0.4 329,777 - DZA65_RS01495 0.23 +0.1 329,777 - DZA65_RS01495 0.23 +0.5 329,777 - DZA65_RS01495 0.23 -0.5 329,900 - DZA65_RS01495 0.37 -1.3 329,900 - DZA65_RS01495 0.37 -0.5 329,900 - DZA65_RS01495 0.37 -1.0 329,900 - DZA65_RS01495 0.37 +0.2 329,900 - DZA65_RS01495 0.37 -0.8 329,900 - DZA65_RS01495 0.37 -0.8 330,029 + DZA65_RS01495 0.53 -1.3 330,030 - DZA65_RS01495 0.53 -0.9 330,030 - -0.9 330,089 + DZA65_RS01495 0.60 -0.2 330,164 + DZA65_RS01495 0.68 -0.2 330,164 + +1.1 330,165 - DZA65_RS01495 0.68 -1.5 330,291 - DZA65_RS01495 0.83 +0.1 330,356 - -1.5 330,356 - -0.1 330,482 + -1.6 330,483 - -1.5 330,483 - -1.1 330,483 - -0.1 330,483 - -1.3 330,486 + -0.9 330,487 - -0.9 330,487 - +0.4 330,487 - +0.2 330,539 + -0.8 330,539 + -1.5 330,539 + -1.3 330,539 + +0.6 330,540 - -0.9 330,540 - -0.4 330,540 - -1.5 330,540 - -1.6 330,540 - -0.2 330,540 - -2.0 330,540 - +0.1 330,702 + DZA65_RS01500 0.25 +0.1 330,702 + DZA65_RS01500 0.25 +1.1 330,702 + DZA65_RS01500 0.25 -1.2 330,703 - DZA65_RS01500 0.25 -0.9 330,703 - DZA65_RS01500 0.25 -0.9 330,703 - DZA65_RS01500 0.25 -1.5 330,703 - DZA65_RS01500 0.25 +1.7 330,706 + DZA65_RS01500 0.26 +0.1 330,707 - DZA65_RS01500 0.26 -1.7 330,707 - DZA65_RS01500 0.26 +1.5 330,707 - DZA65_RS01500 0.26 -2.0 330,707 - DZA65_RS01500 0.26 -0.4 330,707 - DZA65_RS01500 0.26 -0.5 330,707 - DZA65_RS01500 0.26 -0.1 330,707 - DZA65_RS01500 0.26 +0.7 330,717 + DZA65_RS01500 0.28 -1.3 330,717 + DZA65_RS01500 0.28 -0.6 330,718 - DZA65_RS01500 0.28 -0.9 330,831 + DZA65_RS01500 0.51 +0.7 330,832 - DZA65_RS01500 0.52 -1.3 330,832 - DZA65_RS01500 0.52 +0.5 330,895 - DZA65_RS01500 0.64 -1.9 330,895 - DZA65_RS01500 0.64 -1.3 330,895 - DZA65_RS01500 0.64 -1.3 331,011 + DZA65_RS01500 0.88 -1.1 331,017 + DZA65_RS01500 0.89 -0.5 331,017 + DZA65_RS01500 0.89 -1.9 331,018 - DZA65_RS01500 0.90 -1.0 331,018 - DZA65_RS01500 0.90 +0.3 331,042 - -1.1 331,071 + -0.6 331,071 + +0.6 331,071 + -1.3 331,071 + -1.6 331,071 + +0.1 331,071 + +0.1 331,071 + -0.5 331,072 - +0.1 331,072 - +2.1 331,072 - +0.7 331,072 - -0.2 331,072 - -0.6 331,072 - -1.6 331,072 - -0.6 331,072 - -0.7 331,072 - +1.3 331,072 - -0.1 331,072 - -0.3 331,072 - -0.2 331,072 - -0.9 331,072 - +0.7 331,072 - +0.2 331,081 + +1.7 331,081 + -2.5 331,082 - +0.4 331,082 - -0.8 331,082 - -0.1 331,119 + -0.4 331,120 - -0.3 331,120 - -2.0 331,120 - -1.9 331,184 + -0.6 331,184 + -1.1 331,185 - -1.7 331,185 - -0.6 331,237 + DZA65_RS01505 0.26 -1.3 331,237 + DZA65_RS01505 0.26 +0.7 331,237 + DZA65_RS01505 0.26 +0.1 331,237 + DZA65_RS01505 0.26 +0.5 331,237 + DZA65_RS01505 0.26 -0.6 331,238 - DZA65_RS01505 0.27 +1.3 331,238 - DZA65_RS01505 0.27 +0.1 331,238 - DZA65_RS01505 0.27 -0.7 331,238 - DZA65_RS01505 0.27 +0.7 331,238 - DZA65_RS01505 0.27 +0.7 331,238 - DZA65_RS01505 0.27 -1.3 331,241 + DZA65_RS01505 0.28 -0.2 331,242 - DZA65_RS01505 0.28 +0.8 331,242 - DZA65_RS01505 0.28 +0.4 331,242 - DZA65_RS01505 0.28 -0.9 331,336 + DZA65_RS01505 0.61 +0.4 331,336 + DZA65_RS01505 0.61 +2.0 331,337 - DZA65_RS01505 0.61 -1.5 331,337 - DZA65_RS01505 0.61 -0.3 331,349 + DZA65_RS01505 0.65 -0.7 331,350 - DZA65_RS01505 0.66 +0.4 331,350 - DZA65_RS01505 0.66 -1.2 331,360 + DZA65_RS01505 0.69 -0.6 331,361 - DZA65_RS01505 0.69 -0.0 331,439 + -0.3 331,439 + +1.3 331,440 - +0.4 331,448 + -0.2 331,467 + +0.3 331,468 - -0.1 331,488 - -0.3 331,488 - -0.7 331,512 + -1.0 331,512 + -0.3 331,513 - +0.1 331,513 - -0.9 331,513 - -2.6 331,513 - -0.9 331,706 - DZA65_RS01510 0.16 -0.3 331,706 - DZA65_RS01510 0.16 -1.9 331,706 - DZA65_RS01510 0.16 +0.4 331,722 - DZA65_RS01510 0.17 -1.5 331,733 + DZA65_RS01510 0.18 -2.3 331,814 + DZA65_RS01510 0.24 -0.1 331,815 - DZA65_RS01510 0.24 -0.9 331,815 - DZA65_RS01510 0.24 +0.3 332,000 - DZA65_RS01510 0.37 -0.6
Or see this region's nucleotide sequence