Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01470 and DZA65_RS01475 are separated by 29 nucleotides DZA65_RS01475 and DZA65_RS01480 are separated by 190 nucleotides DZA65_RS01480 and DZA65_RS01485 are separated by 66 nucleotides DZA65_RS01485 and DZA65_RS01490 are separated by 179 nucleotides DZA65_RS01490 and DZA65_RS01495 overlap by 4 nucleotides
DZA65_RS01470: DZA65_RS01470 - LysE family transporter, at 325,919 to 326,545
_RS01470
DZA65_RS01475: DZA65_RS01475 - ribosome-associated protein, at 326,575 to 327,123
_RS01475
DZA65_RS01480: DZA65_RS01480 - metalloprotease PmbA, at 327,314 to 328,654
_RS01480
DZA65_RS01485: DZA65_RS01485 - nucleoside diphosphate kinase regulator, at 328,721 to 329,131
_RS01485
DZA65_RS01490: DZA65_RS01490 - PTS phosphocarrier protein NPr, at 329,311 to 329,583
_RS01490
DZA65_RS01495: DZA65_RS01495 - RNase adapter RapZ, at 329,580 to 330,434
_RS01495
Position (kb) 327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 326.420 kb on + strand, within DZA65_RS01470 at 326.420 kb on + strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.421 kb on - strand, within DZA65_RS01470 at 326.506 kb on + strand at 326.506 kb on + strand at 326.507 kb on - strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.543 kb on + strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.544 kb on - strand at 326.557 kb on + strand at 326.573 kb on + strand at 326.573 kb on + strand at 326.576 kb on + strand at 326.599 kb on + strand at 326.604 kb on - strand at 326.705 kb on + strand, within DZA65_RS01475 at 327.052 kb on + strand, within DZA65_RS01475 at 327.052 kb on + strand, within DZA65_RS01475 at 327.052 kb on + strand, within DZA65_RS01475 at 327.138 kb on - strand at 327.196 kb on + strand at 327.197 kb on - strand at 327.197 kb on - strand at 327.197 kb on - strand at 327.213 kb on + strand at 327.213 kb on + strand at 327.213 kb on + strand at 327.213 kb on + strand at 327.213 kb on + strand at 327.214 kb on - strand at 327.214 kb on - strand at 327.214 kb on - strand at 327.214 kb on - strand at 327.214 kb on - strand at 327.224 kb on - strand at 327.234 kb on + strand at 327.234 kb on + strand at 327.234 kb on + strand at 327.235 kb on - strand at 327.246 kb on + strand at 327.246 kb on + strand at 327.246 kb on + strand at 327.247 kb on - strand at 327.247 kb on - strand at 327.279 kb on + strand at 327.280 kb on - strand at 327.295 kb on + strand at 327.296 kb on - strand at 327.296 kb on - strand at 327.302 kb on + strand at 327.366 kb on + strand at 327.512 kb on + strand, within DZA65_RS01480 at 327.513 kb on - strand, within DZA65_RS01480 at 327.515 kb on + strand, within DZA65_RS01480 at 327.515 kb on + strand, within DZA65_RS01480 at 327.515 kb on + strand, within DZA65_RS01480 at 327.515 kb on + strand, within DZA65_RS01480 at 327.605 kb on + strand, within DZA65_RS01480 at 327.606 kb on - strand, within DZA65_RS01480 at 327.790 kb on + strand, within DZA65_RS01480 at 327.800 kb on + strand, within DZA65_RS01480 at 327.832 kb on + strand, within DZA65_RS01480 at 327.832 kb on + strand, within DZA65_RS01480 at 327.832 kb on + strand, within DZA65_RS01480 at 327.832 kb on + strand, within DZA65_RS01480 at 327.833 kb on - strand, within DZA65_RS01480 at 327.833 kb on - strand, within DZA65_RS01480 at 327.833 kb on - strand, within DZA65_RS01480 at 327.845 kb on + strand, within DZA65_RS01480 at 327.845 kb on + strand, within DZA65_RS01480 at 327.845 kb on + strand, within DZA65_RS01480 at 327.845 kb on + strand, within DZA65_RS01480 at 327.845 kb on + strand, within DZA65_RS01480 at 327.845 kb on + strand, within DZA65_RS01480 at 327.846 kb on - strand, within DZA65_RS01480 at 327.846 kb on - strand, within DZA65_RS01480 at 327.846 kb on - strand, within DZA65_RS01480 at 327.846 kb on - strand, within DZA65_RS01480 at 327.914 kb on + strand, within DZA65_RS01480 at 327.914 kb on + strand, within DZA65_RS01480 at 327.915 kb on - strand, within DZA65_RS01480 at 327.915 kb on - strand, within DZA65_RS01480 at 327.915 kb on - strand, within DZA65_RS01480 at 327.915 kb on - strand, within DZA65_RS01480 at 327.915 kb on - strand, within DZA65_RS01480 at 327.920 kb on + strand, within DZA65_RS01480 at 327.920 kb on + strand, within DZA65_RS01480 at 327.920 kb on + strand, within DZA65_RS01480 at 327.920 kb on + strand, within DZA65_RS01480 at 327.920 kb on + strand, within DZA65_RS01480 at 327.921 kb on - strand, within DZA65_RS01480 at 328.114 kb on + strand, within DZA65_RS01480 at 328.115 kb on - strand, within DZA65_RS01480 at 328.115 kb on - strand, within DZA65_RS01480 at 328.270 kb on - strand, within DZA65_RS01480 at 328.295 kb on + strand, within DZA65_RS01480 at 328.295 kb on + strand, within DZA65_RS01480 at 328.295 kb on + strand, within DZA65_RS01480 at 328.295 kb on + strand, within DZA65_RS01480 at 328.295 kb on + strand, within DZA65_RS01480 at 328.296 kb on - strand, within DZA65_RS01480 at 328.296 kb on - strand, within DZA65_RS01480 at 328.306 kb on + strand, within DZA65_RS01480 at 328.306 kb on + strand, within DZA65_RS01480 at 328.307 kb on - strand, within DZA65_RS01480 at 328.348 kb on + strand, within DZA65_RS01480 at 328.348 kb on + strand, within DZA65_RS01480 at 328.349 kb on - strand, within DZA65_RS01480 at 328.349 kb on - strand, within DZA65_RS01480 at 328.552 kb on + strand at 328.552 kb on + strand at 328.552 kb on + strand at 328.553 kb on - strand at 328.553 kb on - strand at 328.553 kb on - strand at 328.553 kb on - strand at 328.553 kb on - strand at 328.650 kb on + strand at 328.651 kb on - strand at 328.652 kb on + strand at 328.652 kb on + strand at 328.652 kb on + strand at 328.652 kb on + strand at 328.652 kb on + strand at 328.652 kb on + strand at 328.653 kb on - strand at 328.653 kb on - strand at 328.653 kb on - strand at 328.653 kb on - strand at 328.653 kb on - strand at 328.653 kb on - strand at 328.659 kb on + strand at 328.659 kb on + strand at 328.659 kb on + strand at 328.660 kb on - strand at 328.708 kb on + strand at 328.731 kb on + strand at 328.731 kb on + strand at 328.756 kb on - strand at 328.813 kb on + strand, within DZA65_RS01485 at 328.813 kb on + strand, within DZA65_RS01485 at 328.814 kb on - strand, within DZA65_RS01485 at 328.814 kb on - strand, within DZA65_RS01485 at 328.814 kb on - strand, within DZA65_RS01485 at 328.814 kb on - strand, within DZA65_RS01485 at 328.918 kb on + strand, within DZA65_RS01485 at 328.918 kb on + strand, within DZA65_RS01485 at 328.918 kb on + strand, within DZA65_RS01485 at 328.918 kb on + strand, within DZA65_RS01485 at 328.919 kb on - strand, within DZA65_RS01485 at 329.050 kb on + strand at 329.050 kb on + strand, within DZA65_RS01485 at 329.125 kb on + strand at 329.125 kb on + strand at 329.125 kb on + strand at 329.125 kb on + strand at 329.126 kb on - strand at 329.131 kb on + strand at 329.131 kb on + strand at 329.131 kb on + strand at 329.131 kb on + strand at 329.131 kb on + strand at 329.132 kb on - strand at 329.132 kb on - strand at 329.132 kb on - strand at 329.132 kb on - strand at 329.153 kb on + strand at 329.154 kb on - strand at 329.154 kb on - strand at 329.160 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.191 kb on + strand at 329.192 kb on - strand at 329.192 kb on - strand at 329.192 kb on - strand at 329.192 kb on - strand at 329.192 kb on - strand at 329.207 kb on + strand at 329.207 kb on + strand at 329.208 kb on - strand at 329.208 kb on - strand at 329.234 kb on + strand at 329.235 kb on - strand at 329.302 kb on + strand at 329.312 kb on + strand at 329.313 kb on - strand at 329.313 kb on - strand at 329.313 kb on - strand at 329.604 kb on - strand at 329.645 kb on - strand at 329.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 326,420 + DZA65_RS01470 0.80 -0.6 326,420 + DZA65_RS01470 0.80 +0.6 326,421 - DZA65_RS01470 0.80 +0.1 326,421 - DZA65_RS01470 0.80 -0.1 326,421 - DZA65_RS01470 0.80 -1.3 326,421 - DZA65_RS01470 0.80 -0.9 326,506 + -0.5 326,506 + +0.5 326,507 - +0.6 326,543 + -0.9 326,543 + -0.5 326,543 + -0.1 326,543 + -0.6 326,543 + +0.1 326,543 + -0.2 326,544 - -0.7 326,544 - -1.5 326,544 - -0.6 326,544 - +0.1 326,544 - -0.4 326,544 - -0.4 326,544 - -1.1 326,557 + -0.4 326,573 + +1.1 326,573 + +0.3 326,576 + -1.2 326,599 + -1.1 326,604 - -0.5 326,705 + DZA65_RS01475 0.24 -1.8 327,052 + DZA65_RS01475 0.87 +0.1 327,052 + DZA65_RS01475 0.87 -0.9 327,052 + DZA65_RS01475 0.87 -0.3 327,138 - -1.1 327,196 + -1.6 327,197 - +0.6 327,197 - -0.9 327,197 - +0.6 327,213 + -1.9 327,213 + -0.6 327,213 + -0.9 327,213 + -1.0 327,213 + +0.9 327,214 - -0.3 327,214 - +0.1 327,214 - -1.1 327,214 - -0.6 327,214 - -0.4 327,224 - -1.8 327,234 + +0.4 327,234 + -0.3 327,234 + +0.1 327,235 - +0.7 327,246 + +0.1 327,246 + -0.1 327,246 + -0.5 327,247 - +0.7 327,247 - -0.3 327,279 + -0.6 327,280 - -0.8 327,295 + -0.6 327,296 - -0.9 327,296 - +0.1 327,302 + -1.1 327,366 + -0.4 327,512 + DZA65_RS01480 0.15 +0.1 327,513 - DZA65_RS01480 0.15 -1.9 327,515 + DZA65_RS01480 0.15 +1.0 327,515 + DZA65_RS01480 0.15 -1.5 327,515 + DZA65_RS01480 0.15 -1.0 327,515 + DZA65_RS01480 0.15 -0.3 327,605 + DZA65_RS01480 0.22 -0.6 327,606 - DZA65_RS01480 0.22 -1.1 327,790 + DZA65_RS01480 0.35 -0.6 327,800 + DZA65_RS01480 0.36 -1.7 327,832 + DZA65_RS01480 0.39 -1.0 327,832 + DZA65_RS01480 0.39 -1.1 327,832 + DZA65_RS01480 0.39 -0.5 327,832 + DZA65_RS01480 0.39 -1.8 327,833 - DZA65_RS01480 0.39 -1.3 327,833 - DZA65_RS01480 0.39 -1.0 327,833 - DZA65_RS01480 0.39 +0.7 327,845 + DZA65_RS01480 0.40 -0.4 327,845 + DZA65_RS01480 0.40 -2.5 327,845 + DZA65_RS01480 0.40 -0.3 327,845 + DZA65_RS01480 0.40 -1.6 327,845 + DZA65_RS01480 0.40 +0.1 327,845 + DZA65_RS01480 0.40 +0.9 327,846 - DZA65_RS01480 0.40 -1.6 327,846 - DZA65_RS01480 0.40 +0.3 327,846 - DZA65_RS01480 0.40 -1.3 327,846 - DZA65_RS01480 0.40 -0.1 327,914 + DZA65_RS01480 0.45 +2.2 327,914 + DZA65_RS01480 0.45 +0.1 327,915 - DZA65_RS01480 0.45 -3.1 327,915 - DZA65_RS01480 0.45 -0.9 327,915 - DZA65_RS01480 0.45 -0.3 327,915 - DZA65_RS01480 0.45 -0.6 327,915 - DZA65_RS01480 0.45 -0.1 327,920 + DZA65_RS01480 0.45 +1.4 327,920 + DZA65_RS01480 0.45 +0.9 327,920 + DZA65_RS01480 0.45 -1.8 327,920 + DZA65_RS01480 0.45 -0.5 327,920 + DZA65_RS01480 0.45 -0.9 327,921 - DZA65_RS01480 0.45 -1.8 328,114 + DZA65_RS01480 0.60 -0.3 328,115 - DZA65_RS01480 0.60 -0.3 328,115 - DZA65_RS01480 0.60 -0.3 328,270 - DZA65_RS01480 0.71 +1.1 328,295 + DZA65_RS01480 0.73 -2.5 328,295 + DZA65_RS01480 0.73 -1.9 328,295 + DZA65_RS01480 0.73 -0.5 328,295 + DZA65_RS01480 0.73 +0.1 328,295 + DZA65_RS01480 0.73 -1.1 328,296 - DZA65_RS01480 0.73 -0.2 328,296 - DZA65_RS01480 0.73 +0.4 328,306 + DZA65_RS01480 0.74 -0.6 328,306 + DZA65_RS01480 0.74 -0.9 328,307 - DZA65_RS01480 0.74 -0.5 328,348 + DZA65_RS01480 0.77 -0.3 328,348 + DZA65_RS01480 0.77 -0.7 328,349 - DZA65_RS01480 0.77 -1.5 328,349 - DZA65_RS01480 0.77 -2.5 328,552 + -1.0 328,552 + +0.3 328,552 + -0.6 328,553 - -0.8 328,553 - +0.2 328,553 - -0.5 328,553 - -0.5 328,553 - -0.4 328,650 + +0.1 328,651 - -2.8 328,652 + -2.4 328,652 + +1.0 328,652 + -1.2 328,652 + -0.4 328,652 + -0.3 328,652 + +0.2 328,653 - -0.5 328,653 - -1.5 328,653 - -1.2 328,653 - -0.6 328,653 - -1.1 328,653 - -0.8 328,659 + +0.9 328,659 + -0.9 328,659 + -1.0 328,660 - -0.9 328,708 + -0.1 328,731 + +0.5 328,731 + +0.4 328,756 - +0.4 328,813 + DZA65_RS01485 0.22 -0.3 328,813 + DZA65_RS01485 0.22 +1.3 328,814 - DZA65_RS01485 0.23 +0.4 328,814 - DZA65_RS01485 0.23 -0.2 328,814 - DZA65_RS01485 0.23 -0.8 328,814 - DZA65_RS01485 0.23 -0.6 328,918 + DZA65_RS01485 0.48 -0.1 328,918 + DZA65_RS01485 0.48 -1.3 328,918 + DZA65_RS01485 0.48 +0.1 328,918 + DZA65_RS01485 0.48 -0.2 328,919 - DZA65_RS01485 0.48 -0.6 329,050 + +1.7 329,050 + DZA65_RS01485 0.80 -0.5 329,125 + -1.3 329,125 + -1.6 329,125 + -0.4 329,125 + +0.5 329,126 - +0.4 329,131 + -1.5 329,131 + -0.5 329,131 + +1.7 329,131 + +0.2 329,131 + +0.1 329,132 - +0.6 329,132 - -0.1 329,132 - -0.9 329,132 - -0.6 329,153 + -0.9 329,154 - +0.9 329,154 - +0.4 329,160 + -1.1 329,191 + -1.1 329,191 + -1.0 329,191 + -1.3 329,191 + -0.7 329,191 + -0.3 329,191 + -0.7 329,191 + +0.5 329,191 + -0.2 329,191 + -0.5 329,191 + -0.6 329,191 + -0.1 329,191 + +1.1 329,191 + -2.4 329,191 + +0.4 329,191 + -1.3 329,191 + -0.9 329,191 + -0.6 329,191 + +0.1 329,192 - -0.8 329,192 - +0.7 329,192 - -1.3 329,192 - -1.6 329,192 - -0.6 329,207 + +0.1 329,207 + -1.6 329,208 - -1.0 329,208 - -0.1 329,234 + +0.4 329,235 - -0.6 329,302 + -1.3 329,312 + -1.3 329,313 - +1.0 329,313 - -0.4 329,313 - +0.4 329,604 - +0.1 329,645 - +0.1 329,645 - +0.4
Or see this region's nucleotide sequence