Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01240 and DZA65_RS01245 are separated by 311 nucleotides DZA65_RS01245 and DZA65_RS01250 are separated by 4 nucleotides DZA65_RS01250 and DZA65_RS01255 are separated by 82 nucleotides
DZA65_RS01240: DZA65_RS01240 - YjaG family protein, at 276,593 to 277,183
_RS01240
DZA65_RS01245: DZA65_RS01245 - DNA-binding protein HU-alpha, at 277,495 to 277,767
_RS01245
DZA65_RS01250: DZA65_RS01250 - DUF1481 domain-containing protein, at 277,772 to 278,500
_RS01250
DZA65_RS01255: DZA65_RS01255 - phosphoribosylamine--glycine ligase, at 278,583 to 279,872
_RS01255
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 276.854 kb on + strand, within DZA65_RS01240 at 276.854 kb on + strand, within DZA65_RS01240 at 276.855 kb on - strand, within DZA65_RS01240 at 276.855 kb on - strand, within DZA65_RS01240 at 276.855 kb on - strand, within DZA65_RS01240 at 276.861 kb on + strand, within DZA65_RS01240 at 276.861 kb on + strand, within DZA65_RS01240 at 276.861 kb on + strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.862 kb on - strand, within DZA65_RS01240 at 276.972 kb on + strand, within DZA65_RS01240 at 277.117 kb on - strand, within DZA65_RS01240 at 277.117 kb on - strand, within DZA65_RS01240 at 277.153 kb on + strand at 277.153 kb on + strand at 277.154 kb on - strand at 277.154 kb on - strand at 277.154 kb on - strand at 277.157 kb on - strand at 277.175 kb on + strand at 277.201 kb on + strand at 277.202 kb on - strand at 277.202 kb on - strand at 277.202 kb on - strand at 277.224 kb on + strand at 277.253 kb on + strand at 277.253 kb on + strand at 277.253 kb on + strand at 277.268 kb on + strand at 277.293 kb on + strand at 277.293 kb on + strand at 277.293 kb on + strand at 277.369 kb on + strand at 277.369 kb on + strand at 277.377 kb on + strand at 277.377 kb on + strand at 277.377 kb on + strand at 277.425 kb on + strand at 277.879 kb on + strand, within DZA65_RS01250 at 277.879 kb on + strand, within DZA65_RS01250 at 277.879 kb on + strand, within DZA65_RS01250 at 277.879 kb on + strand, within DZA65_RS01250 at 277.880 kb on - strand, within DZA65_RS01250 at 277.880 kb on - strand, within DZA65_RS01250 at 277.880 kb on - strand, within DZA65_RS01250 at 277.888 kb on + strand, within DZA65_RS01250 at 277.888 kb on + strand, within DZA65_RS01250 at 277.889 kb on - strand, within DZA65_RS01250 at 277.889 kb on - strand at 277.889 kb on - strand, within DZA65_RS01250 at 277.907 kb on + strand, within DZA65_RS01250 at 277.907 kb on + strand, within DZA65_RS01250 at 277.954 kb on + strand, within DZA65_RS01250 at 277.954 kb on + strand at 277.954 kb on + strand, within DZA65_RS01250 at 277.964 kb on - strand, within DZA65_RS01250 at 278.007 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand at 278.078 kb on + strand, within DZA65_RS01250 at 278.078 kb on + strand at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.079 kb on - strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.156 kb on + strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.157 kb on - strand, within DZA65_RS01250 at 278.208 kb on + strand, within DZA65_RS01250 at 278.209 kb on - strand, within DZA65_RS01250 at 278.209 kb on - strand, within DZA65_RS01250 at 278.216 kb on + strand, within DZA65_RS01250 at 278.217 kb on - strand, within DZA65_RS01250 at 278.217 kb on - strand, within DZA65_RS01250 at 278.217 kb on - strand, within DZA65_RS01250 at 278.434 kb on + strand at 278.435 kb on - strand at 278.435 kb on - strand at 278.435 kb on - strand at 278.498 kb on + strand at 278.498 kb on + strand at 278.499 kb on - strand at 278.512 kb on + strand at 278.512 kb on + strand at 278.512 kb on + strand at 278.512 kb on + strand at 278.512 kb on + strand at 278.513 kb on - strand at 278.513 kb on - strand at 278.513 kb on - strand at 278.513 kb on - strand at 278.521 kb on + strand at 278.521 kb on + strand at 278.671 kb on + strand at 278.694 kb on + strand at 278.781 kb on + strand, within DZA65_RS01255 at 278.781 kb on + strand, within DZA65_RS01255 at 278.781 kb on + strand, within DZA65_RS01255 at 278.781 kb on + strand, within DZA65_RS01255 at 278.781 kb on + strand, within DZA65_RS01255 at 278.782 kb on - strand, within DZA65_RS01255 at 278.782 kb on - strand, within DZA65_RS01255 at 278.786 kb on + strand, within DZA65_RS01255 at 278.786 kb on + strand, within DZA65_RS01255 at 278.787 kb on - strand, within DZA65_RS01255 at 278.787 kb on - strand, within DZA65_RS01255 at 278.787 kb on - strand, within DZA65_RS01255 at 278.834 kb on + strand, within DZA65_RS01255 at 278.949 kb on + strand, within DZA65_RS01255 at 278.949 kb on + strand, within DZA65_RS01255 at 278.950 kb on - strand at 278.950 kb on - strand, within DZA65_RS01255 at 278.950 kb on - strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.076 kb on + strand, within DZA65_RS01255 at 279.077 kb on - strand, within DZA65_RS01255 at 279.077 kb on - strand, within DZA65_RS01255 at 279.077 kb on - strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.119 kb on + strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.120 kb on - strand, within DZA65_RS01255 at 279.175 kb on + strand, within DZA65_RS01255 at 279.176 kb on - strand, within DZA65_RS01255 at 279.176 kb on - strand, within DZA65_RS01255 at 279.324 kb on - strand, within DZA65_RS01255 at 279.440 kb on + strand, within DZA65_RS01255 at 279.471 kb on - strand, within DZA65_RS01255 at 279.471 kb on - strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.472 kb on + strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255 at 279.473 kb on - strand, within DZA65_RS01255
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 276,854 + DZA65_RS01240 0.44 -0.7 276,854 + DZA65_RS01240 0.44 -2.9 276,855 - DZA65_RS01240 0.44 -0.3 276,855 - DZA65_RS01240 0.44 -0.3 276,855 - DZA65_RS01240 0.44 -1.1 276,861 + DZA65_RS01240 0.45 -0.7 276,861 + DZA65_RS01240 0.45 +1.7 276,861 + DZA65_RS01240 0.45 -1.3 276,862 - DZA65_RS01240 0.46 +0.1 276,862 - DZA65_RS01240 0.46 -0.2 276,862 - DZA65_RS01240 0.46 -0.1 276,862 - DZA65_RS01240 0.46 -2.4 276,972 + DZA65_RS01240 0.64 +0.1 277,117 - DZA65_RS01240 0.89 -0.6 277,117 - DZA65_RS01240 0.89 -1.3 277,153 + -1.1 277,153 + -1.2 277,154 - -0.3 277,154 - -1.3 277,154 - -0.9 277,157 - +1.3 277,175 + -0.6 277,201 + +0.8 277,202 - +1.3 277,202 - -0.6 277,202 - -0.6 277,224 + +0.1 277,253 + -0.9 277,253 + -1.2 277,253 + -0.6 277,268 + -0.9 277,293 + -0.3 277,293 + -0.6 277,293 + -0.6 277,369 + +0.0 277,369 + -1.6 277,377 + -0.9 277,377 + +0.4 277,377 + +1.2 277,425 + +0.1 277,879 + DZA65_RS01250 0.15 +1.3 277,879 + DZA65_RS01250 0.15 -0.6 277,879 + DZA65_RS01250 0.15 -0.2 277,879 + DZA65_RS01250 0.15 +0.0 277,880 - DZA65_RS01250 0.15 -1.3 277,880 - DZA65_RS01250 0.15 -0.1 277,880 - DZA65_RS01250 0.15 +0.3 277,888 + DZA65_RS01250 0.16 -2.0 277,888 + DZA65_RS01250 0.16 -0.3 277,889 - DZA65_RS01250 0.16 -0.7 277,889 - -0.3 277,889 - DZA65_RS01250 0.16 -0.7 277,907 + DZA65_RS01250 0.19 +0.1 277,907 + DZA65_RS01250 0.19 -1.1 277,954 + DZA65_RS01250 0.25 -1.7 277,954 + +0.7 277,954 + DZA65_RS01250 0.25 -1.3 277,964 - DZA65_RS01250 0.26 +2.3 278,007 + DZA65_RS01250 0.32 +0.5 278,078 + DZA65_RS01250 0.42 +0.1 278,078 + DZA65_RS01250 0.42 -0.5 278,078 + DZA65_RS01250 0.42 +0.1 278,078 + DZA65_RS01250 0.42 -1.1 278,078 + +0.1 278,078 + DZA65_RS01250 0.42 -0.1 278,078 + -0.3 278,079 - DZA65_RS01250 0.42 -0.9 278,079 - DZA65_RS01250 0.42 -1.0 278,079 - DZA65_RS01250 0.42 -0.1 278,079 - DZA65_RS01250 0.42 -0.6 278,079 - DZA65_RS01250 0.42 +0.4 278,079 - DZA65_RS01250 0.42 -0.3 278,079 - DZA65_RS01250 0.42 -0.6 278,079 - DZA65_RS01250 0.42 +1.1 278,079 - DZA65_RS01250 0.42 -0.9 278,079 - DZA65_RS01250 0.42 -0.4 278,156 + DZA65_RS01250 0.53 -1.4 278,156 + DZA65_RS01250 0.53 -2.1 278,156 + DZA65_RS01250 0.53 -1.1 278,156 + DZA65_RS01250 0.53 -0.3 278,156 + DZA65_RS01250 0.53 -0.0 278,156 + DZA65_RS01250 0.53 +1.1 278,156 + DZA65_RS01250 0.53 -1.2 278,156 + DZA65_RS01250 0.53 -1.9 278,156 + DZA65_RS01250 0.53 +0.5 278,156 + DZA65_RS01250 0.53 -0.3 278,157 - DZA65_RS01250 0.53 -0.2 278,157 - DZA65_RS01250 0.53 -2.0 278,157 - DZA65_RS01250 0.53 -1.3 278,157 - DZA65_RS01250 0.53 -0.3 278,157 - DZA65_RS01250 0.53 -0.3 278,157 - DZA65_RS01250 0.53 -0.2 278,157 - DZA65_RS01250 0.53 +0.1 278,157 - DZA65_RS01250 0.53 -0.3 278,157 - DZA65_RS01250 0.53 -1.2 278,157 - DZA65_RS01250 0.53 -0.3 278,208 + DZA65_RS01250 0.60 +0.1 278,209 - DZA65_RS01250 0.60 -2.0 278,209 - DZA65_RS01250 0.60 +0.3 278,216 + DZA65_RS01250 0.61 +0.7 278,217 - DZA65_RS01250 0.61 -1.1 278,217 - DZA65_RS01250 0.61 -2.0 278,217 - DZA65_RS01250 0.61 -1.4 278,434 + -0.3 278,435 - +0.3 278,435 - -0.7 278,435 - -0.1 278,498 + +1.2 278,498 + +0.7 278,499 - -0.0 278,512 + -0.2 278,512 + -1.3 278,512 + +0.4 278,512 + -0.3 278,512 + +0.4 278,513 - +0.6 278,513 - -1.6 278,513 - +0.4 278,513 - +0.5 278,521 + -0.0 278,521 + +0.6 278,671 + -1.5 278,694 + -1.3 278,781 + DZA65_RS01255 0.15 -2.7 278,781 + DZA65_RS01255 0.15 -1.9 278,781 + DZA65_RS01255 0.15 +0.4 278,781 + DZA65_RS01255 0.15 +0.2 278,781 + DZA65_RS01255 0.15 -0.2 278,782 - DZA65_RS01255 0.15 +0.3 278,782 - DZA65_RS01255 0.15 -0.6 278,786 + DZA65_RS01255 0.16 -1.5 278,786 + DZA65_RS01255 0.16 -0.8 278,787 - DZA65_RS01255 0.16 -1.2 278,787 - DZA65_RS01255 0.16 +0.7 278,787 - DZA65_RS01255 0.16 -0.2 278,834 + DZA65_RS01255 0.19 -0.9 278,949 + DZA65_RS01255 0.28 -0.0 278,949 + DZA65_RS01255 0.28 +1.1 278,950 - +1.1 278,950 - DZA65_RS01255 0.28 +1.2 278,950 - DZA65_RS01255 0.28 -2.1 279,076 + DZA65_RS01255 0.38 -0.9 279,076 + DZA65_RS01255 0.38 +0.3 279,076 + DZA65_RS01255 0.38 +1.2 279,076 + DZA65_RS01255 0.38 +0.2 279,076 + DZA65_RS01255 0.38 +0.7 279,076 + DZA65_RS01255 0.38 -0.4 279,077 - DZA65_RS01255 0.38 +0.1 279,077 - DZA65_RS01255 0.38 -0.3 279,077 - DZA65_RS01255 0.38 +0.9 279,119 + DZA65_RS01255 0.42 +0.4 279,119 + DZA65_RS01255 0.42 +1.7 279,119 + DZA65_RS01255 0.42 +1.7 279,119 + DZA65_RS01255 0.42 -1.2 279,119 + DZA65_RS01255 0.42 -1.7 279,120 - DZA65_RS01255 0.42 -0.3 279,120 - DZA65_RS01255 0.42 +0.2 279,120 - DZA65_RS01255 0.42 +0.2 279,120 - DZA65_RS01255 0.42 +0.1 279,120 - DZA65_RS01255 0.42 +0.1 279,120 - DZA65_RS01255 0.42 -0.2 279,120 - DZA65_RS01255 0.42 -2.0 279,120 - DZA65_RS01255 0.42 +0.8 279,120 - DZA65_RS01255 0.42 -0.5 279,175 + DZA65_RS01255 0.46 -0.5 279,176 - DZA65_RS01255 0.46 -0.1 279,176 - DZA65_RS01255 0.46 +0.4 279,324 - DZA65_RS01255 0.57 -0.3 279,440 + DZA65_RS01255 0.66 -0.1 279,471 - DZA65_RS01255 0.69 -0.6 279,471 - DZA65_RS01255 0.69 -2.1 279,472 + DZA65_RS01255 0.69 -0.9 279,472 + DZA65_RS01255 0.69 -0.6 279,472 + DZA65_RS01255 0.69 +0.1 279,472 + DZA65_RS01255 0.69 -2.7 279,472 + -0.6 279,472 + DZA65_RS01255 0.69 -0.6 279,472 + DZA65_RS01255 0.69 +0.9 279,472 + DZA65_RS01255 0.69 -0.1 279,473 - DZA65_RS01255 0.69 +0.1 279,473 - DZA65_RS01255 0.69 +0.4 279,473 - DZA65_RS01255 0.69 +0.1 279,473 - DZA65_RS01255 0.69 -1.6 279,473 - DZA65_RS01255 0.69 -1.1
Or see this region's nucleotide sequence