Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01205

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01190 and DZA65_RS01195 overlap by 1 nucleotidesDZA65_RS01195 and DZA65_RS01200 are separated by 1 nucleotidesDZA65_RS01200 and DZA65_RS01205 overlap by 4 nucleotidesDZA65_RS01205 and DZA65_RS01210 are separated by 1 nucleotidesDZA65_RS01210 and DZA65_RS01215 overlap by 1 nucleotides DZA65_RS01190: DZA65_RS01190 - 2-iminoacetate synthase ThiH, at 267,556 to 268,704 _RS01190 DZA65_RS01195: DZA65_RS01195 - thiazole synthase, at 268,704 to 269,483 _RS01195 DZA65_RS01200: DZA65_RS01200 - sulfur carrier protein ThiS, at 269,485 to 269,685 _RS01200 DZA65_RS01205: DZA65_RS01205 - HesA/MoeB/ThiF family protein, at 269,682 to 270,431 _RS01205 DZA65_RS01210: DZA65_RS01210 - thiamine phosphate synthase, at 270,433 to 271,068 _RS01210 DZA65_RS01215: DZA65_RS01215 - phosphomethylpyrimidine synthase ThiC, at 271,068 to 273,035 _RS01215 Position (kb) 269 270 271Strain fitness (log2 ratio) -2 -1 0 1at 268.792 kb on + strand, within DZA65_RS01195at 269.072 kb on + strand, within DZA65_RS01195at 269.072 kb on + strand, within DZA65_RS01195at 269.073 kb on - strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.174 kb on - strand, within DZA65_RS01195at 269.174 kb on - strand, within DZA65_RS01195at 269.174 kb on - strand, within DZA65_RS01195at 269.174 kb on - strand, within DZA65_RS01195at 269.279 kb on + strand, within DZA65_RS01195at 269.280 kb on - strand, within DZA65_RS01195at 269.280 kb on - strand, within DZA65_RS01195at 269.295 kb on + strand, within DZA65_RS01195at 269.296 kb on - strand, within DZA65_RS01195at 269.456 kb on + strandat 269.465 kb on + strandat 269.920 kb on + strand, within DZA65_RS01205at 269.920 kb on + strand, within DZA65_RS01205at 270.146 kb on + strand, within DZA65_RS01205at 270.292 kb on + strand, within DZA65_RS01205at 270.293 kb on - strand, within DZA65_RS01205at 270.293 kb on - strand, within DZA65_RS01205at 270.410 kb on + strandat 270.410 kb on + strandat 270.410 kb on + strandat 270.410 kb on + strandat 270.411 kb on - strandat 270.411 kb on - strandat 270.411 kb on - strandat 270.411 kb on - strandat 270.434 kb on + strandat 270.435 kb on - strandat 270.454 kb on + strandat 270.454 kb on + strandat 270.454 kb on + strandat 270.454 kb on + strandat 270.455 kb on - strandat 270.455 kb on - strandat 270.455 kb on - strandat 270.464 kb on - strandat 270.681 kb on + strand, within DZA65_RS01210at 270.696 kb on + strand, within DZA65_RS01210at 270.696 kb on + strand, within DZA65_RS01210at 270.696 kb on + strand, within DZA65_RS01210at 270.697 kb on - strand, within DZA65_RS01210at 270.697 kb on - strand, within DZA65_RS01210at 270.697 kb on - strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.698 kb on + strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.699 kb on - strand, within DZA65_RS01210at 270.823 kb on + strand, within DZA65_RS01210at 270.823 kb on + strand, within DZA65_RS01210at 270.823 kb on + strand, within DZA65_RS01210at 270.823 kb on + strand, within DZA65_RS01210at 270.823 kb on + strand, within DZA65_RS01210at 270.823 kb on + strand, within DZA65_RS01210at 270.823 kb on + strand, within DZA65_RS01210at 270.823 kb on + strand, within DZA65_RS01210at 270.824 kb on - strand, within DZA65_RS01210at 270.824 kb on - strand, within DZA65_RS01210at 270.824 kb on - strand, within DZA65_RS01210at 270.824 kb on - strand, within DZA65_RS01210at 270.824 kb on - strand, within DZA65_RS01210at 270.824 kb on - strand, within DZA65_RS01210at 270.824 kb on - strand, within DZA65_RS01210at 270.824 kb on - strand, within DZA65_RS01210at 270.831 kb on - strand, within DZA65_RS01210at 270.860 kb on + strand, within DZA65_RS01210at 270.888 kb on - strand, within DZA65_RS01210at 270.951 kb on + strand, within DZA65_RS01210at 270.952 kb on - strand, within DZA65_RS01210at 270.958 kb on + strand, within DZA65_RS01210at 270.959 kb on - strand, within DZA65_RS01210at 270.959 kb on - strand, within DZA65_RS01210at 270.959 kb on - strand, within DZA65_RS01210at 270.970 kb on - strand, within DZA65_RS01210at 271.026 kb on - strandat 271.105 kb on + strandat 271.105 kb on + strandat 271.105 kb on + strandat 271.105 kb on + strandat 271.105 kb on + strandat 271.105 kb on + strandat 271.106 kb on - strandat 271.334 kb on + strand, within DZA65_RS01215at 271.335 kb on - strand, within DZA65_RS01215at 271.335 kb on - strand, within DZA65_RS01215at 271.335 kb on - strand, within DZA65_RS01215

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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268,792 + DZA65_RS01195 0.11 -0.9
269,072 + DZA65_RS01195 0.47 +1.4
269,072 + DZA65_RS01195 0.47 -0.7
269,073 - DZA65_RS01195 0.47 -0.4
269,173 + DZA65_RS01195 0.60 -0.4
269,173 + DZA65_RS01195 0.60 -0.8
269,173 + DZA65_RS01195 0.60 -0.5
269,173 + DZA65_RS01195 0.60 +0.1
269,173 + DZA65_RS01195 0.60 -0.3
269,173 + DZA65_RS01195 0.60 -1.6
269,173 + DZA65_RS01195 0.60 -1.0
269,174 - DZA65_RS01195 0.60 -1.3
269,174 - DZA65_RS01195 0.60 -1.4
269,174 - DZA65_RS01195 0.60 +0.1
269,174 - DZA65_RS01195 0.60 -1.1
269,279 + DZA65_RS01195 0.74 -2.2
269,280 - DZA65_RS01195 0.74 +0.7
269,280 - DZA65_RS01195 0.74 -1.1
269,295 + DZA65_RS01195 0.76 -1.3
269,296 - DZA65_RS01195 0.76 +0.3
269,456 + -0.4
269,465 + -0.1
269,920 + DZA65_RS01205 0.32 -0.9
269,920 + DZA65_RS01205 0.32 -1.0
270,146 + DZA65_RS01205 0.62 +0.1
270,292 + DZA65_RS01205 0.81 -0.7
270,293 - DZA65_RS01205 0.81 -0.0
270,293 - DZA65_RS01205 0.81 -2.7
270,410 + -0.6
270,410 + -0.0
270,410 + +0.4
270,410 + -0.3
270,411 - -0.9
270,411 - +0.4
270,411 - -1.6
270,411 - -0.6
270,434 + +1.3
270,435 - -1.9
270,454 + -0.3
270,454 + -0.7
270,454 + -1.3
270,454 + +0.5
270,455 - -1.3
270,455 - -0.3
270,455 - +0.3
270,464 - -1.4
270,681 + DZA65_RS01210 0.39 -0.4
270,696 + DZA65_RS01210 0.41 +0.1
270,696 + DZA65_RS01210 0.41 -1.1
270,696 + DZA65_RS01210 0.41 +0.7
270,697 - DZA65_RS01210 0.42 +0.1
270,697 - DZA65_RS01210 0.42 +0.6
270,697 - DZA65_RS01210 0.42 +0.6
270,698 + DZA65_RS01210 0.42 -1.9
270,698 + DZA65_RS01210 0.42 -0.7
270,698 + DZA65_RS01210 0.42 -0.7
270,698 + DZA65_RS01210 0.42 -0.6
270,698 + DZA65_RS01210 0.42 -2.0
270,698 + DZA65_RS01210 0.42 -1.6
270,698 + DZA65_RS01210 0.42 -0.1
270,698 + DZA65_RS01210 0.42 -1.0
270,698 + DZA65_RS01210 0.42 +0.6
270,698 + DZA65_RS01210 0.42 +0.7
270,698 + DZA65_RS01210 0.42 -2.4
270,698 + DZA65_RS01210 0.42 -0.7
270,698 + DZA65_RS01210 0.42 -0.1
270,698 + DZA65_RS01210 0.42 -2.3
270,699 - DZA65_RS01210 0.42 -0.0
270,699 - DZA65_RS01210 0.42 -0.0
270,699 - DZA65_RS01210 0.42 -0.8
270,699 - DZA65_RS01210 0.42 -0.1
270,699 - DZA65_RS01210 0.42 +1.3
270,699 - DZA65_RS01210 0.42 -0.6
270,699 - DZA65_RS01210 0.42 -2.7
270,699 - DZA65_RS01210 0.42 -0.0
270,699 - DZA65_RS01210 0.42 -1.6
270,699 - DZA65_RS01210 0.42 -1.4
270,699 - DZA65_RS01210 0.42 -0.2
270,699 - DZA65_RS01210 0.42 -1.0
270,699 - DZA65_RS01210 0.42 +0.7
270,823 + DZA65_RS01210 0.61 -1.7
270,823 + DZA65_RS01210 0.61 -0.7
270,823 + DZA65_RS01210 0.61 +0.4
270,823 + DZA65_RS01210 0.61 -1.1
270,823 + DZA65_RS01210 0.61 +0.7
270,823 + DZA65_RS01210 0.61 -0.8
270,823 + DZA65_RS01210 0.61 -1.0
270,823 + DZA65_RS01210 0.61 -0.7
270,824 - DZA65_RS01210 0.61 +1.2
270,824 - DZA65_RS01210 0.61 +1.6
270,824 - DZA65_RS01210 0.61 +0.4
270,824 - DZA65_RS01210 0.61 +1.1
270,824 - DZA65_RS01210 0.61 -2.0
270,824 - DZA65_RS01210 0.61 -0.7
270,824 - DZA65_RS01210 0.61 +1.1
270,824 - DZA65_RS01210 0.61 -1.6
270,831 - DZA65_RS01210 0.63 -0.1
270,860 + DZA65_RS01210 0.67 +0.3
270,888 - DZA65_RS01210 0.72 +0.4
270,951 + DZA65_RS01210 0.81 +0.6
270,952 - DZA65_RS01210 0.82 -0.2
270,958 + DZA65_RS01210 0.83 -0.4
270,959 - DZA65_RS01210 0.83 +0.3
270,959 - DZA65_RS01210 0.83 -2.4
270,959 - DZA65_RS01210 0.83 -0.6
270,970 - DZA65_RS01210 0.84 +1.4
271,026 - -0.5
271,105 + -1.0
271,105 + -0.2
271,105 + +0.7
271,105 + -2.6
271,105 + -1.1
271,105 + +0.5
271,106 - -0.9
271,334 + DZA65_RS01215 0.14 +0.2
271,335 - DZA65_RS01215 0.14 -1.1
271,335 - DZA65_RS01215 0.14 -0.8
271,335 - DZA65_RS01215 0.14 -0.4

Or see this region's nucleotide sequence