Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01040 and DZA65_RS01045 overlap by 1 nucleotides DZA65_RS01045 and DZA65_RS01050 are separated by 41 nucleotides DZA65_RS01050 and DZA65_RS01055 are separated by 18 nucleotides DZA65_RS01055 and DZA65_RS01065 are separated by 373 nucleotides
DZA65_RS01040: DZA65_RS01040 - Xaa-Pro dipeptidase, at 236,020 to 237,351
_RS01040
DZA65_RS01045: DZA65_RS01045 - IMPACT family protein, at 237,351 to 237,965
_RS01045
DZA65_RS01050: DZA65_RS01050 - Trk system potassium transporter TrkH, at 238,007 to 239,458
_RS01050
DZA65_RS01055: DZA65_RS01055 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 239,477 to 240,016
_RS01055
DZA65_RS01065: DZA65_RS01065 - 16S ribosomal RNA, at 240,390 to 241,937
_RS01065
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 237.121 kb on + strand, within DZA65_RS01040 at 237.121 kb on + strand, within DZA65_RS01040 at 237.122 kb on - strand, within DZA65_RS01040 at 237.122 kb on - strand, within DZA65_RS01040 at 237.133 kb on - strand, within DZA65_RS01040 at 237.165 kb on + strand, within DZA65_RS01040 at 237.165 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.181 kb on + strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.182 kb on - strand, within DZA65_RS01040 at 237.326 kb on + strand at 237.327 kb on - strand at 237.401 kb on + strand at 237.401 kb on + strand at 237.402 kb on - strand at 237.417 kb on - strand, within DZA65_RS01045 at 237.417 kb on - strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.516 kb on + strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.517 kb on - strand, within DZA65_RS01045 at 237.590 kb on + strand, within DZA65_RS01045 at 237.591 kb on - strand, within DZA65_RS01045 at 237.591 kb on - strand, within DZA65_RS01045 at 237.591 kb on - strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.649 kb on + strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.650 kb on - strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.654 kb on + strand, within DZA65_RS01045 at 237.655 kb on - strand, within DZA65_RS01045 at 237.655 kb on - strand, within DZA65_RS01045 at 237.655 kb on - strand, within DZA65_RS01045 at 237.657 kb on + strand, within DZA65_RS01045 at 237.657 kb on + strand, within DZA65_RS01045 at 237.658 kb on - strand, within DZA65_RS01045 at 237.699 kb on + strand, within DZA65_RS01045 at 237.700 kb on - strand, within DZA65_RS01045 at 237.700 kb on - strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.783 kb on + strand, within DZA65_RS01045 at 237.849 kb on + strand, within DZA65_RS01045 at 237.849 kb on + strand, within DZA65_RS01045 at 237.849 kb on + strand, within DZA65_RS01045 at 237.850 kb on - strand, within DZA65_RS01045 at 237.923 kb on + strand at 237.923 kb on + strand at 237.963 kb on + strand at 237.963 kb on + strand at 237.963 kb on + strand at 237.964 kb on - strand at 237.964 kb on - strand at 237.964 kb on - strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.991 kb on + strand at 237.992 kb on - strand at 237.992 kb on - strand at 237.992 kb on - strand at 238.097 kb on + strand at 238.097 kb on + strand at 238.097 kb on + strand at 238.098 kb on - strand at 238.098 kb on - strand at 238.123 kb on + strand at 238.123 kb on + strand at 238.124 kb on - strand at 238.181 kb on - strand, within DZA65_RS01050 at 238.181 kb on - strand, within DZA65_RS01050 at 238.181 kb on - strand, within DZA65_RS01050 at 238.181 kb on - strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.218 kb on + strand, within DZA65_RS01050 at 238.219 kb on - strand, within DZA65_RS01050 at 238.219 kb on - strand, within DZA65_RS01050 at 238.219 kb on - strand, within DZA65_RS01050 at 238.221 kb on + strand, within DZA65_RS01050 at 238.222 kb on - strand, within DZA65_RS01050 at 238.487 kb on + strand, within DZA65_RS01050 at 238.522 kb on + strand, within DZA65_RS01050 at 238.522 kb on + strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.523 kb on - strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.571 kb on + strand, within DZA65_RS01050 at 238.572 kb on - strand, within DZA65_RS01050 at 238.572 kb on - strand, within DZA65_RS01050 at 238.575 kb on + strand, within DZA65_RS01050 at 238.575 kb on + strand, within DZA65_RS01050 at 238.575 kb on + strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.576 kb on - strand, within DZA65_RS01050 at 238.627 kb on - strand, within DZA65_RS01050 at 238.720 kb on + strand, within DZA65_RS01050 at 238.720 kb on + strand, within DZA65_RS01050 at 238.720 kb on + strand, within DZA65_RS01050 at 238.723 kb on + strand, within DZA65_RS01050 at 238.724 kb on - strand, within DZA65_RS01050 at 238.724 kb on - strand, within DZA65_RS01050 at 238.724 kb on - strand, within DZA65_RS01050 at 238.744 kb on - strand, within DZA65_RS01050 at 238.837 kb on + strand, within DZA65_RS01050 at 238.838 kb on - strand, within DZA65_RS01050 at 238.838 kb on - strand, within DZA65_RS01050 at 238.871 kb on - strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.898 kb on + strand, within DZA65_RS01050 at 238.899 kb on - strand at 238.899 kb on - strand, within DZA65_RS01050 at 238.899 kb on - strand, within DZA65_RS01050 at 238.948 kb on + strand, within DZA65_RS01050 at 239.032 kb on + strand, within DZA65_RS01050 at 239.089 kb on - strand, within DZA65_RS01050 at 239.089 kb on - strand, within DZA65_RS01050 at 239.144 kb on + strand, within DZA65_RS01050 at 239.144 kb on + strand, within DZA65_RS01050 at 239.144 kb on + strand, within DZA65_RS01050 at 239.145 kb on - strand, within DZA65_RS01050 at 239.145 kb on - strand, within DZA65_RS01050 at 239.145 kb on - strand, within DZA65_RS01050 at 239.146 kb on + strand, within DZA65_RS01050 at 239.146 kb on + strand, within DZA65_RS01050 at 239.146 kb on + strand, within DZA65_RS01050 at 239.147 kb on - strand, within DZA65_RS01050 at 239.147 kb on - strand, within DZA65_RS01050 at 239.147 kb on - strand, within DZA65_RS01050 at 239.152 kb on + strand, within DZA65_RS01050 at 239.152 kb on + strand, within DZA65_RS01050 at 239.153 kb on - strand, within DZA65_RS01050 at 239.153 kb on - strand, within DZA65_RS01050 at 239.153 kb on - strand, within DZA65_RS01050 at 239.216 kb on + strand, within DZA65_RS01050 at 239.230 kb on + strand, within DZA65_RS01050 at 239.265 kb on + strand, within DZA65_RS01050 at 239.266 kb on - strand, within DZA65_RS01050 at 239.386 kb on + strand at 239.419 kb on + strand at 239.419 kb on + strand at 239.419 kb on + strand at 239.420 kb on - strand at 239.420 kb on - strand at 239.420 kb on - strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.430 kb on + strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.431 kb on - strand at 239.434 kb on + strand at 239.434 kb on + strand at 239.435 kb on - strand at 239.435 kb on - strand at 239.435 kb on - strand at 239.456 kb on + strand at 239.463 kb on + strand at 239.463 kb on + strand at 239.464 kb on - strand at 239.476 kb on + strand at 239.476 kb on + strand at 239.476 kb on + strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.477 kb on - strand at 239.487 kb on + strand at 239.487 kb on + strand at 239.487 kb on + strand at 239.488 kb on - strand at 240.014 kb on + strand at 240.075 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.103 kb on - strand at 240.105 kb on - strand at 240.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 237,121 + DZA65_RS01040 0.83 -0.1 237,121 + DZA65_RS01040 0.83 -1.2 237,122 - DZA65_RS01040 0.83 -0.6 237,122 - DZA65_RS01040 0.83 -1.5 237,133 - DZA65_RS01040 0.84 +0.7 237,165 + DZA65_RS01040 0.86 -2.6 237,165 + DZA65_RS01040 0.86 +0.4 237,181 + DZA65_RS01040 0.87 +0.7 237,181 + DZA65_RS01040 0.87 +1.1 237,181 + DZA65_RS01040 0.87 -0.6 237,181 + DZA65_RS01040 0.87 -0.5 237,181 + DZA65_RS01040 0.87 -1.4 237,181 + DZA65_RS01040 0.87 -1.1 237,182 - DZA65_RS01040 0.87 +0.7 237,182 - DZA65_RS01040 0.87 -1.7 237,182 - DZA65_RS01040 0.87 +0.4 237,182 - DZA65_RS01040 0.87 +1.7 237,182 - DZA65_RS01040 0.87 +0.1 237,182 - DZA65_RS01040 0.87 +0.1 237,182 - DZA65_RS01040 0.87 +0.5 237,182 - DZA65_RS01040 0.87 -2.0 237,182 - DZA65_RS01040 0.87 -0.6 237,182 - DZA65_RS01040 0.87 +0.1 237,326 + +0.8 237,327 - -0.6 237,401 + +1.1 237,401 + -1.4 237,402 - +0.4 237,417 - DZA65_RS01045 0.11 -1.6 237,417 - DZA65_RS01045 0.11 -0.9 237,516 + DZA65_RS01045 0.27 -0.2 237,516 + DZA65_RS01045 0.27 +0.1 237,516 + DZA65_RS01045 0.27 -0.2 237,516 + DZA65_RS01045 0.27 -1.1 237,516 + DZA65_RS01045 0.27 -0.3 237,516 + DZA65_RS01045 0.27 -0.3 237,516 + DZA65_RS01045 0.27 -1.4 237,516 + DZA65_RS01045 0.27 +1.0 237,517 - DZA65_RS01045 0.27 -0.2 237,517 - DZA65_RS01045 0.27 -1.1 237,517 - DZA65_RS01045 0.27 -0.2 237,517 - DZA65_RS01045 0.27 +0.3 237,517 - DZA65_RS01045 0.27 -1.5 237,517 - DZA65_RS01045 0.27 -0.8 237,517 - DZA65_RS01045 0.27 +0.2 237,590 + DZA65_RS01045 0.39 -1.6 237,591 - DZA65_RS01045 0.39 -0.9 237,591 - DZA65_RS01045 0.39 +0.1 237,591 - DZA65_RS01045 0.39 -0.7 237,649 + DZA65_RS01045 0.48 -0.3 237,649 + DZA65_RS01045 0.48 -0.1 237,649 + DZA65_RS01045 0.48 +0.6 237,649 + DZA65_RS01045 0.48 +0.5 237,650 - DZA65_RS01045 0.49 +0.2 237,650 - DZA65_RS01045 0.49 -0.0 237,650 - DZA65_RS01045 0.49 +0.2 237,650 - DZA65_RS01045 0.49 +1.0 237,650 - DZA65_RS01045 0.49 -1.7 237,650 - DZA65_RS01045 0.49 +0.8 237,650 - DZA65_RS01045 0.49 -1.3 237,654 + DZA65_RS01045 0.49 +0.4 237,654 + DZA65_RS01045 0.49 +0.7 237,654 + DZA65_RS01045 0.49 +1.0 237,654 + DZA65_RS01045 0.49 -0.8 237,655 - DZA65_RS01045 0.49 +1.3 237,655 - DZA65_RS01045 0.49 -0.9 237,655 - DZA65_RS01045 0.49 -0.6 237,657 + DZA65_RS01045 0.50 -0.2 237,657 + DZA65_RS01045 0.50 -2.3 237,658 - DZA65_RS01045 0.50 +1.7 237,699 + DZA65_RS01045 0.57 -0.5 237,700 - DZA65_RS01045 0.57 +1.7 237,700 - DZA65_RS01045 0.57 +0.6 237,783 + DZA65_RS01045 0.70 +0.6 237,783 + DZA65_RS01045 0.70 -0.1 237,783 + DZA65_RS01045 0.70 -1.6 237,783 + DZA65_RS01045 0.70 +0.5 237,783 + DZA65_RS01045 0.70 +0.1 237,849 + DZA65_RS01045 0.81 -0.7 237,849 + DZA65_RS01045 0.81 +0.1 237,849 + DZA65_RS01045 0.81 -1.3 237,850 - DZA65_RS01045 0.81 +0.1 237,923 + -0.3 237,923 + +0.7 237,963 + -0.4 237,963 + +1.5 237,963 + +0.8 237,964 - -0.3 237,964 - -1.1 237,964 - -0.2 237,991 + -0.7 237,991 + -1.6 237,991 + +1.0 237,991 + -0.1 237,991 + -2.9 237,991 + -2.2 237,992 - -0.2 237,992 - -0.1 237,992 - -0.6 238,097 + -0.9 238,097 + +0.1 238,097 + +1.1 238,098 - +0.7 238,098 - -0.4 238,123 + +1.5 238,123 + -0.9 238,124 - -0.4 238,181 - DZA65_RS01050 0.12 -1.2 238,181 - DZA65_RS01050 0.12 +0.2 238,181 - DZA65_RS01050 0.12 +0.1 238,181 - DZA65_RS01050 0.12 -1.6 238,218 + DZA65_RS01050 0.15 -1.3 238,218 + DZA65_RS01050 0.15 -1.4 238,218 + DZA65_RS01050 0.15 -1.6 238,218 + DZA65_RS01050 0.15 -0.7 238,219 - DZA65_RS01050 0.15 -0.8 238,219 - DZA65_RS01050 0.15 -0.3 238,219 - DZA65_RS01050 0.15 -0.4 238,221 + DZA65_RS01050 0.15 -0.3 238,222 - DZA65_RS01050 0.15 -2.4 238,487 + DZA65_RS01050 0.33 -1.3 238,522 + DZA65_RS01050 0.35 -2.8 238,522 + DZA65_RS01050 0.35 -1.5 238,523 - DZA65_RS01050 0.36 -0.3 238,523 - DZA65_RS01050 0.36 -0.9 238,523 - DZA65_RS01050 0.36 +1.0 238,523 - DZA65_RS01050 0.36 -0.5 238,571 + DZA65_RS01050 0.39 -0.6 238,571 + DZA65_RS01050 0.39 -2.6 238,571 + DZA65_RS01050 0.39 -0.6 238,571 + DZA65_RS01050 0.39 -1.1 238,572 - DZA65_RS01050 0.39 -0.6 238,572 - DZA65_RS01050 0.39 +1.7 238,575 + DZA65_RS01050 0.39 -2.1 238,575 + DZA65_RS01050 0.39 -1.8 238,575 + DZA65_RS01050 0.39 +1.7 238,576 - DZA65_RS01050 0.39 -0.9 238,576 - DZA65_RS01050 0.39 -1.4 238,576 - DZA65_RS01050 0.39 -0.5 238,576 - DZA65_RS01050 0.39 -1.7 238,627 - DZA65_RS01050 0.43 +0.6 238,720 + DZA65_RS01050 0.49 -1.7 238,720 + DZA65_RS01050 0.49 -1.7 238,720 + DZA65_RS01050 0.49 -0.3 238,723 + DZA65_RS01050 0.49 -0.9 238,724 - DZA65_RS01050 0.49 -0.9 238,724 - DZA65_RS01050 0.49 -0.9 238,724 - DZA65_RS01050 0.49 +0.1 238,744 - DZA65_RS01050 0.51 -1.6 238,837 + DZA65_RS01050 0.57 -1.3 238,838 - DZA65_RS01050 0.57 -0.4 238,838 - DZA65_RS01050 0.57 +0.5 238,871 - DZA65_RS01050 0.60 -2.7 238,898 + DZA65_RS01050 0.61 -0.4 238,898 + DZA65_RS01050 0.61 -1.7 238,898 + DZA65_RS01050 0.61 -2.3 238,898 + DZA65_RS01050 0.61 -0.4 238,898 + DZA65_RS01050 0.61 +0.7 238,899 - -0.3 238,899 - DZA65_RS01050 0.61 +0.1 238,899 - DZA65_RS01050 0.61 -0.5 238,948 + DZA65_RS01050 0.65 +0.7 239,032 + DZA65_RS01050 0.71 -1.1 239,089 - DZA65_RS01050 0.75 -0.3 239,089 - DZA65_RS01050 0.75 -1.2 239,144 + DZA65_RS01050 0.78 +0.7 239,144 + DZA65_RS01050 0.78 -2.1 239,144 + DZA65_RS01050 0.78 -0.8 239,145 - DZA65_RS01050 0.78 -1.4 239,145 - DZA65_RS01050 0.78 -1.9 239,145 - DZA65_RS01050 0.78 -2.1 239,146 + DZA65_RS01050 0.78 -1.0 239,146 + DZA65_RS01050 0.78 +0.3 239,146 + DZA65_RS01050 0.78 -0.9 239,147 - DZA65_RS01050 0.79 -1.1 239,147 - DZA65_RS01050 0.79 -1.1 239,147 - DZA65_RS01050 0.79 -1.0 239,152 + DZA65_RS01050 0.79 -0.3 239,152 + DZA65_RS01050 0.79 +0.7 239,153 - DZA65_RS01050 0.79 +1.7 239,153 - DZA65_RS01050 0.79 -0.5 239,153 - DZA65_RS01050 0.79 -0.3 239,216 + DZA65_RS01050 0.83 +0.8 239,230 + DZA65_RS01050 0.84 -1.1 239,265 + DZA65_RS01050 0.87 +0.7 239,266 - DZA65_RS01050 0.87 -1.6 239,386 + -1.9 239,419 + +0.2 239,419 + -0.9 239,419 + +0.5 239,420 - -2.1 239,420 - -0.4 239,420 - +0.1 239,430 + -2.0 239,430 + +0.1 239,430 + -0.1 239,431 - -0.4 239,431 - -0.8 239,431 - -0.3 239,434 + -0.6 239,434 + +0.5 239,435 - -1.1 239,435 - -2.0 239,435 - -1.5 239,456 + +0.5 239,463 + -1.8 239,463 + -0.4 239,464 - +0.8 239,476 + -0.4 239,476 + -2.3 239,476 + +0.4 239,477 - -1.3 239,477 - +0.1 239,477 - -1.1 239,477 - -0.7 239,477 - -1.9 239,487 + -0.9 239,487 + +1.0 239,487 + -0.6 239,488 - -2.3 240,014 + +0.7 240,075 - +0.1 240,103 - -0.3 240,103 - +0.0 240,103 - -0.4 240,103 - -1.0 240,103 - -1.0 240,103 - -0.9 240,103 - -0.7 240,103 - -1.2 240,105 - +0.3 240,105 - -0.1
Or see this region's nucleotide sequence