Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00835 and DZA65_RS00840 are separated by 226 nucleotides DZA65_RS00840 and DZA65_RS00845 are separated by 99 nucleotides DZA65_RS00845 and DZA65_RS00850 overlap by 1 nucleotides
DZA65_RS00835: DZA65_RS00835 - murein hydrolase activator EnvC, at 187,300 to 188,574
_RS00835
DZA65_RS00840: DZA65_RS00840 - rhodanese-like domain-containing protein, at 188,801 to 189,232
_RS00840
DZA65_RS00845: DZA65_RS00845 - protein-export chaperone SecB, at 189,332 to 189,802
_RS00845
DZA65_RS00850: DZA65_RS00850 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 189,802 to 190,821
_RS00850
Position (kb) 189
190 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.488 kb on + strand at 188.521 kb on + strand at 188.522 kb on - strand at 188.522 kb on - strand at 188.585 kb on + strand at 188.585 kb on + strand at 188.585 kb on + strand at 188.586 kb on - strand at 188.586 kb on - strand at 188.586 kb on - strand at 188.632 kb on + strand at 188.632 kb on + strand at 188.633 kb on - strand at 188.673 kb on + strand at 188.693 kb on + strand at 188.693 kb on + strand at 188.716 kb on - strand at 188.724 kb on + strand at 188.724 kb on + strand at 188.724 kb on + strand at 188.725 kb on - strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.741 kb on - strand at 188.741 kb on - strand at 188.741 kb on - strand at 188.741 kb on - strand at 188.741 kb on - strand at 188.741 kb on - strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.745 kb on - strand at 188.746 kb on + strand at 188.746 kb on + strand at 188.746 kb on + strand at 188.761 kb on + strand at 188.761 kb on + strand at 188.761 kb on + strand at 188.761 kb on + strand at 188.774 kb on + strand at 188.774 kb on + strand at 188.774 kb on + strand at 188.774 kb on + strand at 188.774 kb on + strand at 188.793 kb on + strand at 188.812 kb on + strand at 188.812 kb on + strand at 188.812 kb on + strand at 188.812 kb on + strand at 188.812 kb on + strand at 188.813 kb on - strand at 188.884 kb on + strand, within DZA65_RS00840 at 188.896 kb on + strand, within DZA65_RS00840 at 188.896 kb on + strand, within DZA65_RS00840 at 188.897 kb on - strand, within DZA65_RS00840 at 188.947 kb on + strand, within DZA65_RS00840 at 188.948 kb on - strand, within DZA65_RS00840 at 188.950 kb on + strand, within DZA65_RS00840 at 188.970 kb on + strand, within DZA65_RS00840 at 189.007 kb on + strand, within DZA65_RS00840 at 189.007 kb on + strand, within DZA65_RS00840 at 189.007 kb on + strand, within DZA65_RS00840 at 189.008 kb on - strand, within DZA65_RS00840 at 189.267 kb on + strand at 189.267 kb on + strand at 189.376 kb on + strand at 189.377 kb on - strand at 189.380 kb on + strand, within DZA65_RS00845 at 189.749 kb on + strand, within DZA65_RS00845 at 189.749 kb on + strand, within DZA65_RS00845 at 189.749 kb on + strand, within DZA65_RS00845 at 189.749 kb on + strand, within DZA65_RS00845 at 189.822 kb on + strand at 189.822 kb on + strand at 189.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 188,488 + -1.1 188,521 + +0.8 188,522 - +0.4 188,522 - -1.4 188,585 + +0.2 188,585 + -0.6 188,585 + -0.7 188,586 - -0.3 188,586 - -1.2 188,586 - -0.6 188,632 + -0.2 188,632 + +0.8 188,633 - -1.4 188,673 + -1.8 188,693 + +0.1 188,693 + -0.4 188,716 - -2.1 188,724 + -1.1 188,724 + -0.7 188,724 + -0.2 188,725 - -1.1 188,740 + -0.1 188,740 + +0.0 188,740 + -0.5 188,740 + +0.6 188,740 + -0.7 188,740 + -0.5 188,740 + -0.1 188,741 - +1.8 188,741 - -1.1 188,741 - -1.2 188,741 - +0.4 188,741 - -0.2 188,741 - -0.5 188,744 + -0.8 188,744 + +0.4 188,744 + -1.6 188,744 + +0.3 188,744 + -1.3 188,744 + -0.4 188,744 + -1.2 188,744 + -0.6 188,745 - +0.2 188,746 + -1.5 188,746 + +0.9 188,746 + +0.2 188,761 + -1.6 188,761 + -0.8 188,761 + -0.1 188,761 + +1.0 188,774 + +0.8 188,774 + +0.3 188,774 + +0.2 188,774 + -1.2 188,774 + +1.8 188,793 + +1.0 188,812 + +1.0 188,812 + -0.9 188,812 + -0.3 188,812 + -0.4 188,812 + -1.1 188,813 - -2.1 188,884 + DZA65_RS00840 0.19 -1.1 188,896 + DZA65_RS00840 0.22 +0.2 188,896 + DZA65_RS00840 0.22 -1.1 188,897 - DZA65_RS00840 0.22 -0.6 188,947 + DZA65_RS00840 0.34 -0.5 188,948 - DZA65_RS00840 0.34 +0.8 188,950 + DZA65_RS00840 0.34 -0.2 188,970 + DZA65_RS00840 0.39 +0.2 189,007 + DZA65_RS00840 0.48 +0.5 189,007 + DZA65_RS00840 0.48 -0.1 189,007 + DZA65_RS00840 0.48 -0.8 189,008 - DZA65_RS00840 0.48 -0.2 189,267 + -0.2 189,267 + -0.8 189,376 + -0.8 189,377 - +0.8 189,380 + DZA65_RS00845 0.10 -0.2 189,749 + DZA65_RS00845 0.89 -1.2 189,749 + DZA65_RS00845 0.89 +0.4 189,749 + DZA65_RS00845 0.89 -0.6 189,749 + DZA65_RS00845 0.89 -0.2 189,822 + -1.8 189,822 + +0.8 189,823 - -1.2
Or see this region's nucleotide sequence