Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00830 and DZA65_RS00835 are separated by 2 nucleotides DZA65_RS00835 and DZA65_RS00840 are separated by 226 nucleotides DZA65_RS00840 and DZA65_RS00845 are separated by 99 nucleotides
DZA65_RS00830: DZA65_RS00830 - divergent polysaccharide deacetylase family protein, at 186,308 to 187,297
_RS00830
DZA65_RS00835: DZA65_RS00835 - murein hydrolase activator EnvC, at 187,300 to 188,574
_RS00835
DZA65_RS00840: DZA65_RS00840 - rhodanese-like domain-containing protein, at 188,801 to 189,232
_RS00840
DZA65_RS00845: DZA65_RS00845 - protein-export chaperone SecB, at 189,332 to 189,802
_RS00845
Position (kb) 187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 186.342 kb on + strand at 186.342 kb on + strand at 186.342 kb on + strand at 186.343 kb on - strand at 186.370 kb on + strand at 186.370 kb on + strand at 186.371 kb on - strand at 186.371 kb on - strand at 186.371 kb on - strand at 186.389 kb on + strand at 186.389 kb on + strand at 186.389 kb on + strand at 186.390 kb on - strand at 186.390 kb on - strand at 186.390 kb on - strand at 186.407 kb on - strand, within DZA65_RS00830 at 186.407 kb on - strand, within DZA65_RS00830 at 186.489 kb on + strand, within DZA65_RS00830 at 186.489 kb on + strand, within DZA65_RS00830 at 186.489 kb on + strand, within DZA65_RS00830 at 186.489 kb on + strand, within DZA65_RS00830 at 186.490 kb on - strand, within DZA65_RS00830 at 186.490 kb on - strand, within DZA65_RS00830 at 186.490 kb on - strand, within DZA65_RS00830 at 186.508 kb on - strand, within DZA65_RS00830 at 186.508 kb on - strand, within DZA65_RS00830 at 186.650 kb on + strand, within DZA65_RS00830 at 186.650 kb on + strand, within DZA65_RS00830 at 186.651 kb on - strand, within DZA65_RS00830 at 186.651 kb on - strand, within DZA65_RS00830 at 186.651 kb on - strand, within DZA65_RS00830 at 186.724 kb on + strand, within DZA65_RS00830 at 186.724 kb on + strand, within DZA65_RS00830 at 186.725 kb on - strand, within DZA65_RS00830 at 186.799 kb on - strand, within DZA65_RS00830 at 186.871 kb on + strand, within DZA65_RS00830 at 186.872 kb on - strand, within DZA65_RS00830 at 186.895 kb on - strand, within DZA65_RS00830 at 187.063 kb on - strand, within DZA65_RS00830 at 187.228 kb on + strand at 187.228 kb on + strand at 187.228 kb on + strand at 187.229 kb on - strand at 187.229 kb on - strand at 187.258 kb on + strand at 187.258 kb on + strand at 187.258 kb on + strand at 187.259 kb on - strand at 187.259 kb on - strand at 187.259 kb on - strand at 187.286 kb on + strand at 187.286 kb on + strand at 187.286 kb on + strand at 187.287 kb on - strand at 187.301 kb on + strand at 187.302 kb on - strand at 187.302 kb on - strand at 187.302 kb on - strand at 187.302 kb on - strand at 187.309 kb on + strand at 187.310 kb on - strand at 187.310 kb on - strand at 187.358 kb on + strand at 187.456 kb on - strand, within DZA65_RS00835 at 187.457 kb on + strand, within DZA65_RS00835 at 187.457 kb on + strand, within DZA65_RS00835 at 187.457 kb on + strand, within DZA65_RS00835 at 187.463 kb on + strand, within DZA65_RS00835 at 187.464 kb on - strand, within DZA65_RS00835 at 187.464 kb on - strand, within DZA65_RS00835 at 187.464 kb on - strand, within DZA65_RS00835 at 187.464 kb on - strand, within DZA65_RS00835 at 187.512 kb on - strand, within DZA65_RS00835 at 187.512 kb on - strand, within DZA65_RS00835 at 187.562 kb on - strand, within DZA65_RS00835 at 187.667 kb on + strand, within DZA65_RS00835 at 187.667 kb on + strand, within DZA65_RS00835 at 187.667 kb on + strand, within DZA65_RS00835 at 187.668 kb on - strand at 187.668 kb on - strand, within DZA65_RS00835 at 187.668 kb on - strand, within DZA65_RS00835 at 187.668 kb on - strand, within DZA65_RS00835 at 187.668 kb on - strand, within DZA65_RS00835 at 187.668 kb on - strand, within DZA65_RS00835 at 187.668 kb on - strand, within DZA65_RS00835 at 187.734 kb on + strand, within DZA65_RS00835 at 187.734 kb on + strand, within DZA65_RS00835 at 187.734 kb on + strand, within DZA65_RS00835 at 187.734 kb on + strand, within DZA65_RS00835 at 187.735 kb on - strand, within DZA65_RS00835 at 187.735 kb on - strand, within DZA65_RS00835 at 187.735 kb on - strand, within DZA65_RS00835 at 187.736 kb on + strand, within DZA65_RS00835 at 187.736 kb on + strand, within DZA65_RS00835 at 187.736 kb on + strand, within DZA65_RS00835 at 187.736 kb on + strand, within DZA65_RS00835 at 187.736 kb on + strand, within DZA65_RS00835 at 187.736 kb on + strand, within DZA65_RS00835 at 187.736 kb on + strand, within DZA65_RS00835 at 187.736 kb on + strand, within DZA65_RS00835 at 187.736 kb on + strand, within DZA65_RS00835 at 187.736 kb on + strand, within DZA65_RS00835 at 187.737 kb on - strand, within DZA65_RS00835 at 187.737 kb on - strand, within DZA65_RS00835 at 187.737 kb on - strand, within DZA65_RS00835 at 187.737 kb on - strand, within DZA65_RS00835 at 187.737 kb on - strand, within DZA65_RS00835 at 188.099 kb on + strand, within DZA65_RS00835 at 188.099 kb on + strand, within DZA65_RS00835 at 188.099 kb on + strand, within DZA65_RS00835 at 188.100 kb on - strand, within DZA65_RS00835 at 188.100 kb on - strand, within DZA65_RS00835 at 188.100 kb on - strand, within DZA65_RS00835 at 188.109 kb on - strand, within DZA65_RS00835 at 188.488 kb on + strand at 188.521 kb on + strand at 188.522 kb on - strand at 188.522 kb on - strand at 188.585 kb on + strand at 188.585 kb on + strand at 188.585 kb on + strand at 188.586 kb on - strand at 188.586 kb on - strand at 188.586 kb on - strand at 188.632 kb on + strand at 188.632 kb on + strand at 188.633 kb on - strand at 188.673 kb on + strand at 188.693 kb on + strand at 188.693 kb on + strand at 188.716 kb on - strand at 188.724 kb on + strand at 188.724 kb on + strand at 188.724 kb on + strand at 188.725 kb on - strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.740 kb on + strand at 188.741 kb on - strand at 188.741 kb on - strand at 188.741 kb on - strand at 188.741 kb on - strand at 188.741 kb on - strand at 188.741 kb on - strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.744 kb on + strand at 188.745 kb on - strand at 188.746 kb on + strand at 188.746 kb on + strand at 188.746 kb on + strand at 188.761 kb on + strand at 188.761 kb on + strand at 188.761 kb on + strand at 188.761 kb on + strand at 188.774 kb on + strand at 188.774 kb on + strand at 188.774 kb on + strand at 188.774 kb on + strand at 188.774 kb on + strand at 188.793 kb on + strand at 188.812 kb on + strand at 188.812 kb on + strand at 188.812 kb on + strand at 188.812 kb on + strand at 188.812 kb on + strand at 188.813 kb on - strand at 188.884 kb on + strand, within DZA65_RS00840 at 188.896 kb on + strand, within DZA65_RS00840 at 188.896 kb on + strand, within DZA65_RS00840 at 188.897 kb on - strand, within DZA65_RS00840 at 188.947 kb on + strand, within DZA65_RS00840 at 188.948 kb on - strand, within DZA65_RS00840 at 188.950 kb on + strand, within DZA65_RS00840 at 188.970 kb on + strand, within DZA65_RS00840 at 189.007 kb on + strand, within DZA65_RS00840 at 189.007 kb on + strand, within DZA65_RS00840 at 189.007 kb on + strand, within DZA65_RS00840 at 189.008 kb on - strand, within DZA65_RS00840 at 189.267 kb on + strand at 189.267 kb on + strand at 189.376 kb on + strand at 189.377 kb on - strand at 189.380 kb on + strand, within DZA65_RS00845
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 186,342 + +0.4 186,342 + +1.1 186,342 + -0.8 186,343 - -0.3 186,370 + -0.6 186,370 + +0.8 186,371 - -0.1 186,371 - +0.1 186,371 - -1.1 186,389 + +1.8 186,389 + -0.2 186,389 + -0.6 186,390 - +0.4 186,390 - -0.1 186,390 - +1.0 186,407 - DZA65_RS00830 0.10 +0.8 186,407 - DZA65_RS00830 0.10 +0.4 186,489 + DZA65_RS00830 0.18 -0.7 186,489 + DZA65_RS00830 0.18 -0.6 186,489 + DZA65_RS00830 0.18 +0.0 186,489 + DZA65_RS00830 0.18 +1.3 186,490 - DZA65_RS00830 0.18 +0.4 186,490 - DZA65_RS00830 0.18 -0.6 186,490 - DZA65_RS00830 0.18 -0.1 186,508 - DZA65_RS00830 0.20 -1.1 186,508 - DZA65_RS00830 0.20 -1.4 186,650 + DZA65_RS00830 0.35 -1.6 186,650 + DZA65_RS00830 0.35 -0.9 186,651 - DZA65_RS00830 0.35 +0.2 186,651 - DZA65_RS00830 0.35 +0.8 186,651 - DZA65_RS00830 0.35 -0.4 186,724 + DZA65_RS00830 0.42 -1.6 186,724 + DZA65_RS00830 0.42 +2.2 186,725 - DZA65_RS00830 0.42 +0.2 186,799 - DZA65_RS00830 0.50 -2.4 186,871 + DZA65_RS00830 0.57 +0.0 186,872 - DZA65_RS00830 0.57 -0.6 186,895 - DZA65_RS00830 0.59 -0.1 187,063 - DZA65_RS00830 0.76 +1.2 187,228 + -0.1 187,228 + +0.9 187,228 + +0.6 187,229 - -1.1 187,229 - -1.4 187,258 + -1.3 187,258 + -0.6 187,258 + -1.1 187,259 - -1.5 187,259 - +0.9 187,259 - -0.4 187,286 + -1.0 187,286 + -0.5 187,286 + -1.4 187,287 - +0.2 187,301 + +0.2 187,302 - -0.5 187,302 - -1.4 187,302 - +0.6 187,302 - +0.2 187,309 + +0.4 187,310 - -1.2 187,310 - +1.8 187,358 + -1.1 187,456 - DZA65_RS00835 0.12 +0.3 187,457 + DZA65_RS00835 0.12 -1.4 187,457 + DZA65_RS00835 0.12 -1.1 187,457 + DZA65_RS00835 0.12 -1.2 187,463 + DZA65_RS00835 0.13 -1.1 187,464 - DZA65_RS00835 0.13 -1.1 187,464 - DZA65_RS00835 0.13 -0.8 187,464 - DZA65_RS00835 0.13 -1.8 187,464 - DZA65_RS00835 0.13 +0.4 187,512 - DZA65_RS00835 0.17 -0.1 187,512 - DZA65_RS00835 0.17 +0.3 187,562 - DZA65_RS00835 0.21 -1.4 187,667 + DZA65_RS00835 0.29 -1.1 187,667 + DZA65_RS00835 0.29 -0.6 187,667 + DZA65_RS00835 0.29 -1.2 187,668 - +1.2 187,668 - DZA65_RS00835 0.29 -2.2 187,668 - DZA65_RS00835 0.29 -0.6 187,668 - DZA65_RS00835 0.29 -0.2 187,668 - DZA65_RS00835 0.29 +1.0 187,668 - DZA65_RS00835 0.29 +0.2 187,668 - DZA65_RS00835 0.29 +0.4 187,734 + DZA65_RS00835 0.34 -0.8 187,734 + DZA65_RS00835 0.34 +0.4 187,734 + DZA65_RS00835 0.34 +1.0 187,734 + DZA65_RS00835 0.34 -1.1 187,735 - DZA65_RS00835 0.34 -1.7 187,735 - DZA65_RS00835 0.34 -0.2 187,735 - DZA65_RS00835 0.34 -1.7 187,736 + DZA65_RS00835 0.34 +0.2 187,736 + DZA65_RS00835 0.34 +0.2 187,736 + DZA65_RS00835 0.34 -1.2 187,736 + DZA65_RS00835 0.34 +0.4 187,736 + DZA65_RS00835 0.34 -0.2 187,736 + DZA65_RS00835 0.34 -2.2 187,736 + DZA65_RS00835 0.34 -1.1 187,736 + DZA65_RS00835 0.34 +0.5 187,736 + DZA65_RS00835 0.34 -0.1 187,736 + DZA65_RS00835 0.34 -1.1 187,737 - DZA65_RS00835 0.34 +0.6 187,737 - DZA65_RS00835 0.34 -1.1 187,737 - DZA65_RS00835 0.34 -1.4 187,737 - DZA65_RS00835 0.34 -1.1 187,737 - DZA65_RS00835 0.34 -0.2 188,099 + DZA65_RS00835 0.63 -0.8 188,099 + DZA65_RS00835 0.63 -0.8 188,099 + DZA65_RS00835 0.63 -1.2 188,100 - DZA65_RS00835 0.63 +0.2 188,100 - DZA65_RS00835 0.63 -0.6 188,100 - DZA65_RS00835 0.63 -0.6 188,109 - DZA65_RS00835 0.63 -0.8 188,488 + -1.1 188,521 + +0.8 188,522 - +0.4 188,522 - -1.4 188,585 + +0.2 188,585 + -0.6 188,585 + -0.7 188,586 - -0.3 188,586 - -1.2 188,586 - -0.6 188,632 + -0.2 188,632 + +0.8 188,633 - -1.4 188,673 + -1.8 188,693 + +0.1 188,693 + -0.4 188,716 - -2.1 188,724 + -1.1 188,724 + -0.7 188,724 + -0.2 188,725 - -1.1 188,740 + -0.1 188,740 + +0.0 188,740 + -0.5 188,740 + +0.6 188,740 + -0.7 188,740 + -0.5 188,740 + -0.1 188,741 - +1.8 188,741 - -1.1 188,741 - -1.2 188,741 - +0.4 188,741 - -0.2 188,741 - -0.5 188,744 + -0.8 188,744 + +0.4 188,744 + -1.6 188,744 + +0.3 188,744 + -1.3 188,744 + -0.4 188,744 + -1.2 188,744 + -0.6 188,745 - +0.2 188,746 + -1.5 188,746 + +0.9 188,746 + +0.2 188,761 + -1.6 188,761 + -0.8 188,761 + -0.1 188,761 + +1.0 188,774 + +0.8 188,774 + +0.3 188,774 + +0.2 188,774 + -1.2 188,774 + +1.8 188,793 + +1.0 188,812 + +1.0 188,812 + -0.9 188,812 + -0.3 188,812 + -0.4 188,812 + -1.1 188,813 - -2.1 188,884 + DZA65_RS00840 0.19 -1.1 188,896 + DZA65_RS00840 0.22 +0.2 188,896 + DZA65_RS00840 0.22 -1.1 188,897 - DZA65_RS00840 0.22 -0.6 188,947 + DZA65_RS00840 0.34 -0.5 188,948 - DZA65_RS00840 0.34 +0.8 188,950 + DZA65_RS00840 0.34 -0.2 188,970 + DZA65_RS00840 0.39 +0.2 189,007 + DZA65_RS00840 0.48 +0.5 189,007 + DZA65_RS00840 0.48 -0.1 189,007 + DZA65_RS00840 0.48 -0.8 189,008 - DZA65_RS00840 0.48 -0.2 189,267 + -0.2 189,267 + -0.8 189,376 + -0.8 189,377 - +0.8 189,380 + DZA65_RS00845 0.10 -0.2
Or see this region's nucleotide sequence