Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00755 and DZA65_RS00760 are separated by 238 nucleotides DZA65_RS00760 and DZA65_RS00765 are separated by 11 nucleotides DZA65_RS00765 and DZA65_RS00770 are separated by 75 nucleotides DZA65_RS00770 and DZA65_RS00775 are separated by 60 nucleotides DZA65_RS00775 and DZA65_RS00780 overlap by 11 nucleotides
DZA65_RS00755: DZA65_RS00755 - JAB domain-containing protein, at 171,916 to 172,581
_RS00755
DZA65_RS00760: DZA65_RS00760 - 50S ribosomal protein L28, at 172,820 to 173,056
_RS00760
DZA65_RS00765: DZA65_RS00765 - 50S ribosomal protein L33, at 173,068 to 173,235
_RS00765
DZA65_RS00770: DZA65_RS00770 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 173,311 to 174,120
_RS00770
DZA65_RS00775: DZA65_RS00775 - pantetheine-phosphate adenylyltransferase, at 174,181 to 174,660
_RS00775
DZA65_RS00780: DZA65_RS00780 - glycosyltransferase family 2 protein, at 174,650 to 175,441
_RS00780
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2 at 172.351 kb on - strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.361 kb on + strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.362 kb on - strand, within DZA65_RS00755 at 172.425 kb on + strand, within DZA65_RS00755 at 172.425 kb on + strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.426 kb on - strand, within DZA65_RS00755 at 172.550 kb on - strand at 172.550 kb on - strand at 172.587 kb on - strand at 172.587 kb on - strand at 173.277 kb on + strand at 173.373 kb on + strand at 173.373 kb on + strand at 173.374 kb on - strand at 173.383 kb on + strand at 173.383 kb on + strand at 173.384 kb on - strand at 173.384 kb on - strand at 173.386 kb on - strand at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.482 kb on + strand, within DZA65_RS00770 at 173.513 kb on + strand, within DZA65_RS00770 at 173.527 kb on + strand, within DZA65_RS00770 at 173.560 kb on + strand, within DZA65_RS00770 at 173.561 kb on - strand, within DZA65_RS00770 at 173.561 kb on - strand, within DZA65_RS00770 at 173.610 kb on + strand, within DZA65_RS00770 at 173.610 kb on + strand, within DZA65_RS00770 at 173.623 kb on + strand, within DZA65_RS00770 at 173.623 kb on + strand, within DZA65_RS00770 at 173.626 kb on - strand, within DZA65_RS00770 at 173.626 kb on - strand, within DZA65_RS00770 at 173.785 kb on - strand, within DZA65_RS00770 at 173.811 kb on - strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.821 kb on + strand, within DZA65_RS00770 at 173.822 kb on - strand, within DZA65_RS00770 at 173.822 kb on - strand, within DZA65_RS00770 at 173.822 kb on - strand, within DZA65_RS00770 at 173.822 kb on - strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.906 kb on + strand, within DZA65_RS00770 at 173.907 kb on - strand, within DZA65_RS00770 at 173.907 kb on - strand, within DZA65_RS00770 at 173.907 kb on - strand, within DZA65_RS00770 at 173.907 kb on - strand, within DZA65_RS00770 at 173.907 kb on - strand, within DZA65_RS00770 at 173.924 kb on + strand, within DZA65_RS00770 at 173.924 kb on + strand, within DZA65_RS00770 at 173.925 kb on - strand, within DZA65_RS00770 at 173.925 kb on - strand, within DZA65_RS00770 at 173.925 kb on - strand, within DZA65_RS00770 at 173.925 kb on - strand, within DZA65_RS00770 at 174.012 kb on - strand, within DZA65_RS00770 at 174.012 kb on - strand, within DZA65_RS00770 at 174.019 kb on + strand, within DZA65_RS00770 at 174.019 kb on + strand, within DZA65_RS00770 at 174.019 kb on + strand, within DZA65_RS00770 at 174.019 kb on + strand, within DZA65_RS00770 at 174.020 kb on - strand, within DZA65_RS00770 at 174.020 kb on - strand, within DZA65_RS00770 at 174.102 kb on + strand at 174.103 kb on - strand at 174.118 kb on + strand at 174.118 kb on + strand at 174.119 kb on - strand at 174.119 kb on - strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.141 kb on + strand at 174.142 kb on - strand at 174.142 kb on - strand at 174.142 kb on - strand at 174.161 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 172,351 - DZA65_RS00755 0.65 +0.5 172,361 + DZA65_RS00755 0.67 -0.1 172,361 + DZA65_RS00755 0.67 -1.1 172,361 + DZA65_RS00755 0.67 -1.6 172,361 + DZA65_RS00755 0.67 -0.8 172,361 + DZA65_RS00755 0.67 -0.2 172,361 + DZA65_RS00755 0.67 -0.6 172,362 - DZA65_RS00755 0.67 -0.6 172,362 - DZA65_RS00755 0.67 +1.2 172,362 - DZA65_RS00755 0.67 -0.2 172,362 - DZA65_RS00755 0.67 +0.5 172,425 + DZA65_RS00755 0.76 -0.4 172,425 + DZA65_RS00755 0.76 -2.5 172,426 - DZA65_RS00755 0.77 -0.9 172,426 - DZA65_RS00755 0.77 +0.8 172,426 - DZA65_RS00755 0.77 -0.1 172,550 - -1.0 172,550 - +1.3 172,587 - -0.1 172,587 - -1.7 173,277 + -2.1 173,373 + +0.7 173,373 + -0.2 173,374 - -2.5 173,383 + -0.2 173,383 + -0.5 173,384 - -1.9 173,384 - -0.8 173,386 - +0.8 173,482 + DZA65_RS00770 0.21 -1.1 173,482 + DZA65_RS00770 0.21 -0.7 173,482 + DZA65_RS00770 0.21 +0.8 173,482 + DZA65_RS00770 0.21 -0.5 173,482 + DZA65_RS00770 0.21 +0.5 173,513 + DZA65_RS00770 0.25 -0.6 173,527 + DZA65_RS00770 0.27 -1.2 173,560 + DZA65_RS00770 0.31 -1.2 173,561 - DZA65_RS00770 0.31 -0.1 173,561 - DZA65_RS00770 0.31 -0.1 173,610 + DZA65_RS00770 0.37 -0.2 173,610 + DZA65_RS00770 0.37 +1.8 173,623 + DZA65_RS00770 0.39 +0.6 173,623 + DZA65_RS00770 0.39 +0.8 173,626 - DZA65_RS00770 0.39 +0.2 173,626 - DZA65_RS00770 0.39 +0.7 173,785 - DZA65_RS00770 0.59 -0.7 173,811 - DZA65_RS00770 0.62 +0.8 173,821 + DZA65_RS00770 0.63 -0.9 173,821 + DZA65_RS00770 0.63 -0.5 173,821 + DZA65_RS00770 0.63 -1.1 173,821 + DZA65_RS00770 0.63 -1.1 173,821 + DZA65_RS00770 0.63 +0.5 173,821 + DZA65_RS00770 0.63 +0.5 173,821 + DZA65_RS00770 0.63 +1.8 173,821 + DZA65_RS00770 0.63 -0.2 173,821 + DZA65_RS00770 0.63 -0.8 173,822 - DZA65_RS00770 0.63 -2.5 173,822 - DZA65_RS00770 0.63 -1.1 173,822 - DZA65_RS00770 0.63 -0.1 173,822 - DZA65_RS00770 0.63 -1.1 173,906 + DZA65_RS00770 0.73 +0.1 173,906 + DZA65_RS00770 0.73 -0.7 173,906 + DZA65_RS00770 0.73 +0.0 173,906 + DZA65_RS00770 0.73 -0.6 173,906 + DZA65_RS00770 0.73 +0.8 173,906 + DZA65_RS00770 0.73 +1.5 173,907 - DZA65_RS00770 0.74 +0.4 173,907 - DZA65_RS00770 0.74 -0.6 173,907 - DZA65_RS00770 0.74 -2.3 173,907 - DZA65_RS00770 0.74 +0.3 173,907 - DZA65_RS00770 0.74 +0.2 173,924 + DZA65_RS00770 0.76 +0.0 173,924 + DZA65_RS00770 0.76 +0.8 173,925 - DZA65_RS00770 0.76 -1.7 173,925 - DZA65_RS00770 0.76 -0.2 173,925 - DZA65_RS00770 0.76 +1.8 173,925 - DZA65_RS00770 0.76 -0.6 174,012 - DZA65_RS00770 0.87 -0.2 174,012 - DZA65_RS00770 0.87 +0.3 174,019 + DZA65_RS00770 0.87 +0.4 174,019 + DZA65_RS00770 0.87 -0.6 174,019 + DZA65_RS00770 0.87 +1.0 174,019 + DZA65_RS00770 0.87 -0.4 174,020 - DZA65_RS00770 0.88 -0.2 174,020 - DZA65_RS00770 0.88 +0.4 174,102 + -1.4 174,103 - -0.1 174,118 + +0.8 174,118 + -1.7 174,119 - -1.4 174,119 - -0.8 174,141 + +1.4 174,141 + -1.4 174,141 + +0.4 174,142 - -1.3 174,142 - +0.5 174,142 - -0.2 174,161 + +0.3
Or see this region's nucleotide sequence