Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00675 and DZA65_RS00680 are separated by 27 nucleotides DZA65_RS00680 and DZA65_RS00685 are separated by 32 nucleotides DZA65_RS00685 and DZA65_RS00690 are separated by 11 nucleotides DZA65_RS00690 and DZA65_RS00695 are separated by 8 nucleotides
DZA65_RS00675: DZA65_RS00675 - isoaspartyl peptidase/L-asparaginase, at 156,164 to 157,132
_RS00675
DZA65_RS00680: DZA65_RS00680 - M55 family metallopeptidase, at 157,160 to 157,981
_RS00680
DZA65_RS00685: DZA65_RS00685 - P1 family peptidase, at 158,014 to 159,069
_RS00685
DZA65_RS00690: DZA65_RS00690 - ABC transporter permease subunit, at 159,081 to 159,980
_RS00690
DZA65_RS00695: DZA65_RS00695 - ABC transporter permease subunit, at 159,989 to 160,909
_RS00695
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.120 kb on + strand at 157.145 kb on + strand at 157.145 kb on + strand at 157.145 kb on + strand at 157.145 kb on + strand at 157.146 kb on - strand at 157.162 kb on - strand at 157.162 kb on - strand at 157.162 kb on - strand at 157.209 kb on - strand at 157.327 kb on - strand at 157.357 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.467 kb on + strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.468 kb on - strand, within DZA65_RS00680 at 157.567 kb on - strand, within DZA65_RS00680 at 157.571 kb on - strand, within DZA65_RS00680 at 157.571 kb on - strand, within DZA65_RS00680 at 157.611 kb on + strand, within DZA65_RS00680 at 157.611 kb on + strand, within DZA65_RS00680 at 157.772 kb on - strand at 157.892 kb on + strand at 157.899 kb on + strand at 157.900 kb on - strand at 157.900 kb on - strand at 157.970 kb on - strand at 157.970 kb on - strand at 157.973 kb on + strand at 157.974 kb on - strand at 157.974 kb on - strand at 157.974 kb on - strand at 158.326 kb on - strand, within DZA65_RS00685 at 158.626 kb on - strand, within DZA65_RS00685 at 158.632 kb on - strand, within DZA65_RS00685 at 158.731 kb on - strand, within DZA65_RS00685 at 158.803 kb on + strand, within DZA65_RS00685 at 158.865 kb on + strand, within DZA65_RS00685 at 158.865 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.931 kb on + strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.932 kb on - strand, within DZA65_RS00685 at 158.957 kb on - strand, within DZA65_RS00685 at 159.059 kb on + strand at 159.060 kb on - strand at 159.082 kb on + strand at 159.082 kb on + strand at 159.083 kb on - strand at 159.083 kb on - strand at 159.158 kb on + strand at 159.227 kb on + strand, within DZA65_RS00690 at 159.227 kb on + strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.228 kb on - strand, within DZA65_RS00690 at 159.322 kb on + strand, within DZA65_RS00690 at 159.322 kb on + strand, within DZA65_RS00690 at 159.322 kb on + strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.323 kb on - strand, within DZA65_RS00690 at 159.357 kb on - strand, within DZA65_RS00690 at 159.412 kb on + strand, within DZA65_RS00690 at 159.413 kb on - strand, within DZA65_RS00690 at 159.501 kb on - strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.567 kb on + strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.568 kb on - strand, within DZA65_RS00690 at 159.610 kb on + strand, within DZA65_RS00690 at 159.610 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.613 kb on + strand, within DZA65_RS00690 at 159.614 kb on - strand, within DZA65_RS00690 at 159.614 kb on - strand, within DZA65_RS00690 at 159.650 kb on + strand, within DZA65_RS00690 at 159.679 kb on + strand, within DZA65_RS00690 at 159.679 kb on + strand, within DZA65_RS00690 at 159.679 kb on + strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.680 kb on - strand, within DZA65_RS00690 at 159.700 kb on + strand, within DZA65_RS00690 at 159.701 kb on - strand, within DZA65_RS00690 at 159.701 kb on - strand, within DZA65_RS00690 at 159.701 kb on - strand, within DZA65_RS00690 at 159.704 kb on + strand, within DZA65_RS00690 at 159.704 kb on + strand, within DZA65_RS00690 at 159.704 kb on + strand, within DZA65_RS00690 at 159.890 kb on + strand, within DZA65_RS00690 at 159.990 kb on + strand at 159.995 kb on + strand at 159.995 kb on + strand at 159.995 kb on + strand at 159.996 kb on - strand at 159.996 kb on - strand at 160.023 kb on + strand at 160.023 kb on + strand at 160.024 kb on - strand at 160.024 kb on - strand at 160.024 kb on - strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.045 kb on + strand at 160.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 157,120 + -1.0 157,145 + -0.4 157,145 + +0.8 157,145 + +1.2 157,145 + -0.1 157,146 - -0.2 157,162 - -0.4 157,162 - +0.2 157,162 - +1.2 157,209 - -1.0 157,327 - +0.8 157,357 + DZA65_RS00680 0.24 -1.8 157,467 + DZA65_RS00680 0.37 -0.7 157,467 + DZA65_RS00680 0.37 -0.5 157,467 + DZA65_RS00680 0.37 +0.2 157,467 + DZA65_RS00680 0.37 -1.2 157,468 - DZA65_RS00680 0.37 -0.2 157,468 - DZA65_RS00680 0.37 +0.1 157,468 - DZA65_RS00680 0.37 -0.9 157,468 - DZA65_RS00680 0.37 -0.7 157,468 - DZA65_RS00680 0.37 -0.2 157,567 - DZA65_RS00680 0.50 -0.4 157,571 - DZA65_RS00680 0.50 -1.0 157,571 - DZA65_RS00680 0.50 -1.0 157,611 + DZA65_RS00680 0.55 +0.7 157,611 + DZA65_RS00680 0.55 -1.2 157,772 - +1.8 157,892 + -0.2 157,899 + +1.3 157,900 - -1.0 157,900 - -1.0 157,970 - +0.3 157,970 - -0.0 157,973 + -0.6 157,974 - +0.5 157,974 - -0.7 157,974 - +0.0 158,326 - DZA65_RS00685 0.30 -1.7 158,626 - DZA65_RS00685 0.58 -1.4 158,632 - DZA65_RS00685 0.59 -0.0 158,731 - DZA65_RS00685 0.68 -0.0 158,803 + DZA65_RS00685 0.75 -0.8 158,865 + DZA65_RS00685 0.81 -1.2 158,865 + DZA65_RS00685 0.81 +0.3 158,931 + DZA65_RS00685 0.87 +1.3 158,931 + DZA65_RS00685 0.87 -1.0 158,931 + DZA65_RS00685 0.87 -0.3 158,932 - DZA65_RS00685 0.87 -1.2 158,932 - DZA65_RS00685 0.87 -0.2 158,932 - DZA65_RS00685 0.87 -2.0 158,932 - DZA65_RS00685 0.87 +0.2 158,957 - DZA65_RS00685 0.89 -0.3 159,059 + -0.2 159,060 - +0.2 159,082 + +0.1 159,082 + -0.1 159,083 - +0.2 159,083 - -1.4 159,158 + -1.4 159,227 + DZA65_RS00690 0.16 +0.3 159,227 + DZA65_RS00690 0.16 -0.6 159,228 - DZA65_RS00690 0.16 -1.7 159,228 - +0.2 159,228 - DZA65_RS00690 0.16 +1.8 159,228 - DZA65_RS00690 0.16 -0.2 159,228 - DZA65_RS00690 0.16 -1.0 159,228 - DZA65_RS00690 0.16 -0.9 159,322 + DZA65_RS00690 0.27 -0.1 159,322 + DZA65_RS00690 0.27 +0.3 159,322 + DZA65_RS00690 0.27 -0.8 159,323 - DZA65_RS00690 0.27 +1.2 159,323 - DZA65_RS00690 0.27 +0.4 159,323 - DZA65_RS00690 0.27 -0.8 159,323 - DZA65_RS00690 0.27 -0.5 159,357 - DZA65_RS00690 0.31 -0.0 159,412 + DZA65_RS00690 0.37 -2.1 159,413 - DZA65_RS00690 0.37 -0.5 159,501 - DZA65_RS00690 0.47 +0.8 159,567 + DZA65_RS00690 0.54 -0.8 159,567 + DZA65_RS00690 0.54 +0.7 159,567 + DZA65_RS00690 0.54 -0.6 159,567 + DZA65_RS00690 0.54 +0.2 159,567 + DZA65_RS00690 0.54 -1.4 159,567 + DZA65_RS00690 0.54 +1.0 159,567 + DZA65_RS00690 0.54 +0.4 159,567 + DZA65_RS00690 0.54 -0.9 159,568 - DZA65_RS00690 0.54 -0.2 159,568 - DZA65_RS00690 0.54 -0.2 159,568 - DZA65_RS00690 0.54 +0.3 159,568 - DZA65_RS00690 0.54 -0.7 159,568 - +0.8 159,568 - DZA65_RS00690 0.54 +0.6 159,568 - DZA65_RS00690 0.54 -0.4 159,568 - DZA65_RS00690 0.54 -1.2 159,568 - DZA65_RS00690 0.54 -0.7 159,568 - DZA65_RS00690 0.54 -1.7 159,610 + DZA65_RS00690 0.59 +0.4 159,610 + DZA65_RS00690 0.59 -0.8 159,613 + DZA65_RS00690 0.59 -0.0 159,613 + DZA65_RS00690 0.59 +2.3 159,613 + DZA65_RS00690 0.59 -0.6 159,613 + DZA65_RS00690 0.59 -0.3 159,614 - DZA65_RS00690 0.59 -0.0 159,614 - DZA65_RS00690 0.59 +1.5 159,650 + DZA65_RS00690 0.63 -0.3 159,679 + DZA65_RS00690 0.66 +0.6 159,679 + DZA65_RS00690 0.66 -0.6 159,679 + DZA65_RS00690 0.66 -0.4 159,680 - DZA65_RS00690 0.67 +0.2 159,680 - DZA65_RS00690 0.67 -1.1 159,680 - DZA65_RS00690 0.67 +1.8 159,680 - DZA65_RS00690 0.67 +0.8 159,700 + DZA65_RS00690 0.69 -0.8 159,701 - DZA65_RS00690 0.69 -0.8 159,701 - DZA65_RS00690 0.69 -0.5 159,701 - DZA65_RS00690 0.69 +0.2 159,704 + DZA65_RS00690 0.69 -0.8 159,704 + DZA65_RS00690 0.69 -0.2 159,704 + DZA65_RS00690 0.69 -0.0 159,890 + DZA65_RS00690 0.90 +0.0 159,990 + -0.2 159,995 + -0.2 159,995 + +0.1 159,995 + -0.4 159,996 - -1.6 159,996 - +0.8 160,023 + +0.5 160,023 + -0.7 160,024 - +0.2 160,024 - -1.6 160,024 - +0.8 160,045 + -1.7 160,045 + +0.2 160,045 + +0.1 160,045 + +1.2 160,045 + +0.0 160,046 - +0.2
Or see this region's nucleotide sequence