Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00675

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00670 and DZA65_RS00675 overlap by 19 nucleotidesDZA65_RS00675 and DZA65_RS00680 are separated by 27 nucleotidesDZA65_RS00680 and DZA65_RS00685 are separated by 32 nucleotides DZA65_RS00670: DZA65_RS00670 - HlyD family efflux transporter periplasmic adaptor subunit, at 154,920 to 156,182 _RS00670 DZA65_RS00675: DZA65_RS00675 - isoaspartyl peptidase/L-asparaginase, at 156,164 to 157,132 _RS00675 DZA65_RS00680: DZA65_RS00680 - M55 family metallopeptidase, at 157,160 to 157,981 _RS00680 DZA65_RS00685: DZA65_RS00685 - P1 family peptidase, at 158,014 to 159,069 _RS00685 Position (kb) 156 157 158Strain fitness (log2 ratio) -2 -1 0 1 2at 155.164 kb on + strand, within DZA65_RS00670at 155.164 kb on + strand, within DZA65_RS00670at 155.164 kb on + strand, within DZA65_RS00670at 155.164 kb on + strand, within DZA65_RS00670at 155.165 kb on - strand, within DZA65_RS00670at 155.165 kb on - strand, within DZA65_RS00670at 155.165 kb on - strand, within DZA65_RS00670at 155.165 kb on - strand, within DZA65_RS00670at 155.165 kb on - strand, within DZA65_RS00670at 155.204 kb on + strand, within DZA65_RS00670at 155.205 kb on - strand, within DZA65_RS00670at 155.205 kb on - strand, within DZA65_RS00670at 155.205 kb on - strand, within DZA65_RS00670at 155.261 kb on + strand, within DZA65_RS00670at 155.261 kb on + strand, within DZA65_RS00670at 155.261 kb on + strand, within DZA65_RS00670at 155.261 kb on + strand, within DZA65_RS00670at 155.261 kb on + strand, within DZA65_RS00670at 155.261 kb on + strand, within DZA65_RS00670at 155.261 kb on + strand, within DZA65_RS00670at 155.261 kb on + strand, within DZA65_RS00670at 155.262 kb on - strand, within DZA65_RS00670at 155.262 kb on - strand, within DZA65_RS00670at 155.262 kb on - strand, within DZA65_RS00670at 155.262 kb on - strand, within DZA65_RS00670at 155.262 kb on - strand, within DZA65_RS00670at 155.262 kb on - strand, within DZA65_RS00670at 155.266 kb on + strand, within DZA65_RS00670at 155.266 kb on + strand, within DZA65_RS00670at 155.266 kb on + strand, within DZA65_RS00670at 155.267 kb on - strand, within DZA65_RS00670at 155.304 kb on - strand, within DZA65_RS00670at 155.304 kb on - strand, within DZA65_RS00670at 155.314 kb on + strand, within DZA65_RS00670at 155.315 kb on - strand, within DZA65_RS00670at 155.336 kb on - strand, within DZA65_RS00670at 155.336 kb on - strand, within DZA65_RS00670at 155.364 kb on - strand, within DZA65_RS00670at 155.378 kb on - strand, within DZA65_RS00670at 155.408 kb on + strand, within DZA65_RS00670at 155.421 kb on - strand, within DZA65_RS00670at 155.421 kb on - strand, within DZA65_RS00670at 155.434 kb on + strand, within DZA65_RS00670at 155.434 kb on + strand, within DZA65_RS00670at 155.434 kb on + strand, within DZA65_RS00670at 155.434 kb on + strand, within DZA65_RS00670at 155.434 kb on + strand, within DZA65_RS00670at 155.435 kb on - strand, within DZA65_RS00670at 155.435 kb on - strand, within DZA65_RS00670at 155.435 kb on - strand, within DZA65_RS00670at 155.435 kb on - strand, within DZA65_RS00670at 155.435 kb on - strand, within DZA65_RS00670at 155.499 kb on - strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.589 kb on + strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.590 kb on - strand, within DZA65_RS00670at 155.627 kb on + strand, within DZA65_RS00670at 155.628 kb on - strand, within DZA65_RS00670at 155.628 kb on - strand, within DZA65_RS00670at 155.699 kb on + strand, within DZA65_RS00670at 155.700 kb on - strand, within DZA65_RS00670at 155.700 kb on - strand, within DZA65_RS00670at 155.752 kb on + strand, within DZA65_RS00670at 155.786 kb on + strand, within DZA65_RS00670at 155.786 kb on + strand, within DZA65_RS00670at 155.786 kb on + strand, within DZA65_RS00670at 155.786 kb on + strand, within DZA65_RS00670at 155.787 kb on - strand, within DZA65_RS00670at 155.787 kb on - strand, within DZA65_RS00670at 155.787 kb on - strand, within DZA65_RS00670at 155.787 kb on - strand, within DZA65_RS00670at 155.787 kb on - strand, within DZA65_RS00670at 155.787 kb on - strand, within DZA65_RS00670at 155.849 kb on + strand, within DZA65_RS00670at 155.849 kb on + strand, within DZA65_RS00670at 155.849 kb on + strand, within DZA65_RS00670at 155.850 kb on - strand, within DZA65_RS00670at 155.850 kb on - strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strandat 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strandat 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.898 kb on + strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.899 kb on - strand, within DZA65_RS00670at 155.993 kb on + strand, within DZA65_RS00670at 155.993 kb on + strand, within DZA65_RS00670at 155.994 kb on - strand, within DZA65_RS00670at 156.054 kb on + strand, within DZA65_RS00670at 156.054 kb on + strand, within DZA65_RS00670at 156.054 kb on + strand, within DZA65_RS00670at 156.054 kb on + strand, within DZA65_RS00670at 156.054 kb on + strand, within DZA65_RS00670at 156.054 kb on + strand, within DZA65_RS00670at 156.054 kb on + strand, within DZA65_RS00670at 156.055 kb on - strand, within DZA65_RS00670at 156.055 kb on - strand, within DZA65_RS00670at 156.055 kb on - strand, within DZA65_RS00670at 156.055 kb on - strand, within DZA65_RS00670at 156.055 kb on - strand, within DZA65_RS00670at 156.055 kb on - strand, within DZA65_RS00670at 156.055 kb on - strand, within DZA65_RS00670at 156.064 kb on - strandat 156.169 kb on + strandat 156.169 kb on + strandat 156.170 kb on - strandat 156.181 kb on - strandat 156.181 kb on - strandat 156.210 kb on + strandat 156.211 kb on - strandat 156.225 kb on + strandat 156.225 kb on + strandat 156.225 kb on + strandat 156.226 kb on - strandat 156.226 kb on - strandat 156.384 kb on + strand, within DZA65_RS00675at 156.385 kb on - strand, within DZA65_RS00675at 156.385 kb on - strand, within DZA65_RS00675at 156.457 kb on - strand, within DZA65_RS00675at 156.457 kb on - strand, within DZA65_RS00675at 157.120 kb on + strandat 157.145 kb on + strandat 157.145 kb on + strandat 157.145 kb on + strandat 157.145 kb on + strandat 157.146 kb on - strandat 157.162 kb on - strandat 157.162 kb on - strandat 157.162 kb on - strandat 157.209 kb on - strandat 157.327 kb on - strandat 157.357 kb on + strand, within DZA65_RS00680at 157.467 kb on + strand, within DZA65_RS00680at 157.467 kb on + strand, within DZA65_RS00680at 157.467 kb on + strand, within DZA65_RS00680at 157.467 kb on + strand, within DZA65_RS00680at 157.468 kb on - strand, within DZA65_RS00680at 157.468 kb on - strand, within DZA65_RS00680at 157.468 kb on - strand, within DZA65_RS00680at 157.468 kb on - strand, within DZA65_RS00680at 157.468 kb on - strand, within DZA65_RS00680at 157.567 kb on - strand, within DZA65_RS00680at 157.571 kb on - strand, within DZA65_RS00680at 157.571 kb on - strand, within DZA65_RS00680at 157.611 kb on + strand, within DZA65_RS00680at 157.611 kb on + strand, within DZA65_RS00680at 157.772 kb on - strandat 157.892 kb on + strandat 157.899 kb on + strandat 157.900 kb on - strandat 157.900 kb on - strandat 157.970 kb on - strandat 157.970 kb on - strandat 157.973 kb on + strandat 157.974 kb on - strandat 157.974 kb on - strandat 157.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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155,164 + DZA65_RS00670 0.19 +0.8
155,164 + DZA65_RS00670 0.19 -0.1
155,164 + DZA65_RS00670 0.19 +1.0
155,164 + DZA65_RS00670 0.19 -1.4
155,165 - DZA65_RS00670 0.19 +0.5
155,165 - DZA65_RS00670 0.19 +0.5
155,165 - DZA65_RS00670 0.19 -0.9
155,165 - DZA65_RS00670 0.19 -1.8
155,165 - DZA65_RS00670 0.19 +1.8
155,204 + DZA65_RS00670 0.22 -0.6
155,205 - DZA65_RS00670 0.23 -0.0
155,205 - DZA65_RS00670 0.23 -1.0
155,205 - DZA65_RS00670 0.23 -1.7
155,261 + DZA65_RS00670 0.27 +1.1
155,261 + DZA65_RS00670 0.27 -0.8
155,261 + DZA65_RS00670 0.27 +0.2
155,261 + DZA65_RS00670 0.27 -0.7
155,261 + DZA65_RS00670 0.27 +0.4
155,261 + DZA65_RS00670 0.27 +0.0
155,261 + DZA65_RS00670 0.27 -1.4
155,261 + DZA65_RS00670 0.27 +0.3
155,262 - DZA65_RS00670 0.27 -1.8
155,262 - DZA65_RS00670 0.27 -1.4
155,262 - DZA65_RS00670 0.27 -2.3
155,262 - DZA65_RS00670 0.27 -0.8
155,262 - DZA65_RS00670 0.27 -1.0
155,262 - DZA65_RS00670 0.27 -0.0
155,266 + DZA65_RS00670 0.27 -0.2
155,266 + DZA65_RS00670 0.27 -1.3
155,266 + DZA65_RS00670 0.27 +0.5
155,267 - DZA65_RS00670 0.27 +0.8
155,304 - DZA65_RS00670 0.30 -0.6
155,304 - DZA65_RS00670 0.30 +0.2
155,314 + DZA65_RS00670 0.31 -2.0
155,315 - DZA65_RS00670 0.31 -1.4
155,336 - DZA65_RS00670 0.33 -1.0
155,336 - DZA65_RS00670 0.33 -2.7
155,364 - DZA65_RS00670 0.35 +0.9
155,378 - DZA65_RS00670 0.36 +1.0
155,408 + DZA65_RS00670 0.39 -0.8
155,421 - DZA65_RS00670 0.40 +0.3
155,421 - DZA65_RS00670 0.40 +1.8
155,434 + DZA65_RS00670 0.41 -0.6
155,434 + DZA65_RS00670 0.41 -0.6
155,434 + DZA65_RS00670 0.41 -0.2
155,434 + DZA65_RS00670 0.41 -1.8
155,434 + DZA65_RS00670 0.41 -0.2
155,435 - DZA65_RS00670 0.41 -0.5
155,435 - DZA65_RS00670 0.41 -1.8
155,435 - DZA65_RS00670 0.41 -0.1
155,435 - DZA65_RS00670 0.41 +0.5
155,435 - DZA65_RS00670 0.41 -1.9
155,499 - DZA65_RS00670 0.46 -1.9
155,589 + DZA65_RS00670 0.53 -0.2
155,589 + DZA65_RS00670 0.53 -0.7
155,589 + DZA65_RS00670 0.53 +0.2
155,589 + DZA65_RS00670 0.53 -2.1
155,589 + DZA65_RS00670 0.53 -0.0
155,589 + DZA65_RS00670 0.53 -0.9
155,589 + DZA65_RS00670 0.53 -1.2
155,589 + DZA65_RS00670 0.53 +0.1
155,589 + DZA65_RS00670 0.53 -1.2
155,589 + DZA65_RS00670 0.53 -0.6
155,589 + DZA65_RS00670 0.53 +0.8
155,589 + DZA65_RS00670 0.53 -0.0
155,589 + DZA65_RS00670 0.53 -0.6
155,589 + DZA65_RS00670 0.53 +0.3
155,589 + DZA65_RS00670 0.53 +2.1
155,589 + DZA65_RS00670 0.53 -1.5
155,589 + DZA65_RS00670 0.53 -0.4
155,589 + DZA65_RS00670 0.53 -1.0
155,589 + DZA65_RS00670 0.53 +1.8
155,589 + DZA65_RS00670 0.53 -0.2
155,590 - DZA65_RS00670 0.53 +0.5
155,590 - DZA65_RS00670 0.53 -0.2
155,590 - DZA65_RS00670 0.53 +0.5
155,590 - DZA65_RS00670 0.53 -0.9
155,590 - DZA65_RS00670 0.53 -2.0
155,590 - DZA65_RS00670 0.53 -1.9
155,590 - DZA65_RS00670 0.53 -0.2
155,590 - DZA65_RS00670 0.53 -1.6
155,590 - DZA65_RS00670 0.53 -0.6
155,590 - DZA65_RS00670 0.53 -1.3
155,590 - DZA65_RS00670 0.53 -0.4
155,590 - DZA65_RS00670 0.53 -0.3
155,590 - DZA65_RS00670 0.53 +1.4
155,590 - DZA65_RS00670 0.53 -1.6
155,590 - DZA65_RS00670 0.53 +1.5
155,590 - DZA65_RS00670 0.53 -0.0
155,590 - DZA65_RS00670 0.53 -1.2
155,590 - DZA65_RS00670 0.53 -0.9
155,590 - DZA65_RS00670 0.53 -1.8
155,590 - DZA65_RS00670 0.53 +1.1
155,590 - DZA65_RS00670 0.53 -0.9
155,590 - DZA65_RS00670 0.53 +0.8
155,590 - DZA65_RS00670 0.53 -0.2
155,590 - DZA65_RS00670 0.53 -1.5
155,627 + DZA65_RS00670 0.56 -2.0
155,628 - DZA65_RS00670 0.56 +0.3
155,628 - DZA65_RS00670 0.56 -2.1
155,699 + DZA65_RS00670 0.62 -0.6
155,700 - DZA65_RS00670 0.62 -0.7
155,700 - DZA65_RS00670 0.62 -1.2
155,752 + DZA65_RS00670 0.66 +0.3
155,786 + DZA65_RS00670 0.69 -1.2
155,786 + DZA65_RS00670 0.69 -0.6
155,786 + DZA65_RS00670 0.69 -0.6
155,786 + DZA65_RS00670 0.69 -2.6
155,787 - DZA65_RS00670 0.69 -0.3
155,787 - DZA65_RS00670 0.69 +0.4
155,787 - DZA65_RS00670 0.69 +0.5
155,787 - DZA65_RS00670 0.69 -0.9
155,787 - DZA65_RS00670 0.69 +1.0
155,787 - DZA65_RS00670 0.69 +0.8
155,849 + DZA65_RS00670 0.74 +0.8
155,849 + DZA65_RS00670 0.74 -0.6
155,849 + DZA65_RS00670 0.74 -0.1
155,850 - DZA65_RS00670 0.74 +0.5
155,850 - DZA65_RS00670 0.74 -2.1
155,898 + DZA65_RS00670 0.77 -0.8
155,898 + DZA65_RS00670 0.77 -0.8
155,898 + DZA65_RS00670 0.77 -1.4
155,898 + +0.2
155,898 + DZA65_RS00670 0.77 +0.0
155,898 + DZA65_RS00670 0.77 -1.8
155,898 + -1.0
155,898 + DZA65_RS00670 0.77 -0.7
155,898 + DZA65_RS00670 0.77 -1.2
155,898 + DZA65_RS00670 0.77 +2.6
155,898 + DZA65_RS00670 0.77 +0.6
155,898 + DZA65_RS00670 0.77 +0.1
155,898 + DZA65_RS00670 0.77 +0.2
155,898 + DZA65_RS00670 0.77 +1.0
155,898 + DZA65_RS00670 0.77 +0.8
155,898 + DZA65_RS00670 0.77 -1.4
155,898 + DZA65_RS00670 0.77 +0.4
155,898 + DZA65_RS00670 0.77 +0.8
155,899 - DZA65_RS00670 0.78 -1.0
155,899 - DZA65_RS00670 0.78 +0.6
155,899 - DZA65_RS00670 0.78 -0.7
155,899 - DZA65_RS00670 0.78 -0.4
155,899 - DZA65_RS00670 0.78 -0.6
155,899 - DZA65_RS00670 0.78 +0.5
155,899 - DZA65_RS00670 0.78 -1.4
155,899 - DZA65_RS00670 0.78 -1.6
155,899 - DZA65_RS00670 0.78 +0.8
155,899 - DZA65_RS00670 0.78 -0.6
155,899 - DZA65_RS00670 0.78 -0.7
155,899 - DZA65_RS00670 0.78 +1.4
155,899 - DZA65_RS00670 0.78 -0.3
155,899 - DZA65_RS00670 0.78 -0.9
155,899 - DZA65_RS00670 0.78 -1.1
155,993 + DZA65_RS00670 0.85 -0.4
155,993 + DZA65_RS00670 0.85 -1.4
155,994 - DZA65_RS00670 0.85 -0.2
156,054 + DZA65_RS00670 0.90 -1.2
156,054 + DZA65_RS00670 0.90 -1.2
156,054 + DZA65_RS00670 0.90 -0.0
156,054 + DZA65_RS00670 0.90 +0.2
156,054 + DZA65_RS00670 0.90 -1.0
156,054 + DZA65_RS00670 0.90 +0.9
156,054 + DZA65_RS00670 0.90 -0.6
156,055 - DZA65_RS00670 0.90 -1.8
156,055 - DZA65_RS00670 0.90 -0.7
156,055 - DZA65_RS00670 0.90 -0.8
156,055 - DZA65_RS00670 0.90 -0.7
156,055 - DZA65_RS00670 0.90 -1.6
156,055 - DZA65_RS00670 0.90 -0.0
156,055 - DZA65_RS00670 0.90 +0.4
156,064 - -0.8
156,169 + -1.0
156,169 + +1.3
156,170 - -0.2
156,181 - +0.2
156,181 - -0.6
156,210 + -2.1
156,211 - -0.8
156,225 + +0.3
156,225 + -0.1
156,225 + -0.4
156,226 - -0.0
156,226 - +1.9
156,384 + DZA65_RS00675 0.23 -0.9
156,385 - DZA65_RS00675 0.23 -0.4
156,385 - DZA65_RS00675 0.23 -1.5
156,457 - DZA65_RS00675 0.30 +0.2
156,457 - DZA65_RS00675 0.30 -1.0
157,120 + -1.0
157,145 + -0.4
157,145 + +0.8
157,145 + +1.2
157,145 + -0.1
157,146 - -0.2
157,162 - -0.4
157,162 - +0.2
157,162 - +1.2
157,209 - -1.0
157,327 - +0.8
157,357 + DZA65_RS00680 0.24 -1.8
157,467 + DZA65_RS00680 0.37 -0.7
157,467 + DZA65_RS00680 0.37 -0.5
157,467 + DZA65_RS00680 0.37 +0.2
157,467 + DZA65_RS00680 0.37 -1.2
157,468 - DZA65_RS00680 0.37 -0.2
157,468 - DZA65_RS00680 0.37 +0.1
157,468 - DZA65_RS00680 0.37 -0.9
157,468 - DZA65_RS00680 0.37 -0.7
157,468 - DZA65_RS00680 0.37 -0.2
157,567 - DZA65_RS00680 0.50 -0.4
157,571 - DZA65_RS00680 0.50 -1.0
157,571 - DZA65_RS00680 0.50 -1.0
157,611 + DZA65_RS00680 0.55 +0.7
157,611 + DZA65_RS00680 0.55 -1.2
157,772 - +1.8
157,892 + -0.2
157,899 + +1.3
157,900 - -1.0
157,900 - -1.0
157,970 - +0.3
157,970 - -0.0
157,973 + -0.6
157,974 - +0.5
157,974 - -0.7
157,974 - +0.0

Or see this region's nucleotide sequence