Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00595 and DZA65_RS00600 overlap by 4 nucleotides DZA65_RS00600 and DZA65_RS00605 are separated by 0 nucleotides DZA65_RS00605 and DZA65_RS00610 overlap by 1 nucleotides DZA65_RS00610 and DZA65_RS00615 overlap by 4 nucleotides
DZA65_RS00595: DZA65_RS00595 - ABC transporter permease, at 138,302 to 139,312
_RS00595
DZA65_RS00600: DZA65_RS00600 - ABC transporter permease, at 139,309 to 140,211
_RS00600
DZA65_RS00605: DZA65_RS00605 - ABC transporter ATP-binding protein, at 140,212 to 141,039
_RS00605
DZA65_RS00610: DZA65_RS00610 - ABC transporter ATP-binding protein, at 141,039 to 141,779
_RS00610
DZA65_RS00615: DZA65_RS00615 - serine hydrolase, at 141,776 to 143,287
_RS00615
Position (kb) 140
141
142 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 139.228 kb on + strand at 139.228 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.283 kb on + strand at 139.283 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.318 kb on + strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.319 kb on - strand at 139.493 kb on - strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.608 kb on + strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.609 kb on - strand, within DZA65_RS00600 at 139.611 kb on + strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.612 kb on - strand, within DZA65_RS00600 at 139.705 kb on - strand, within DZA65_RS00600 at 139.705 kb on - strand, within DZA65_RS00600 at 139.887 kb on + strand, within DZA65_RS00600 at 140.209 kb on + strand at 140.209 kb on + strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.485 kb on - strand, within DZA65_RS00605 at 140.618 kb on + strand, within DZA65_RS00605 at 140.618 kb on + strand, within DZA65_RS00605 at 140.619 kb on - strand, within DZA65_RS00605 at 140.619 kb on - strand, within DZA65_RS00605 at 140.619 kb on - strand, within DZA65_RS00605 at 140.654 kb on - strand, within DZA65_RS00605 at 140.887 kb on + strand, within DZA65_RS00605 at 140.887 kb on + strand, within DZA65_RS00605 at 140.888 kb on - strand, within DZA65_RS00605 at 140.888 kb on - strand, within DZA65_RS00605 at 140.888 kb on - strand, within DZA65_RS00605 at 140.888 kb on - strand, within DZA65_RS00605 at 140.888 kb on - strand, within DZA65_RS00605 at 140.930 kb on + strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.931 kb on - strand, within DZA65_RS00605 at 140.947 kb on + strand, within DZA65_RS00605 at 140.947 kb on + strand, within DZA65_RS00605 at 140.947 kb on + strand, within DZA65_RS00605 at 140.947 kb on + strand, within DZA65_RS00605 at 140.948 kb on - strand, within DZA65_RS00605 at 140.949 kb on + strand, within DZA65_RS00605 at 140.950 kb on - strand, within DZA65_RS00605 at 140.950 kb on - strand, within DZA65_RS00605 at 140.997 kb on + strand at 141.045 kb on - strand at 141.045 kb on - strand at 141.164 kb on + strand, within DZA65_RS00610 at 141.191 kb on + strand, within DZA65_RS00610 at 141.191 kb on + strand, within DZA65_RS00610 at 141.292 kb on - strand, within DZA65_RS00610 at 141.292 kb on - strand, within DZA65_RS00610 at 141.292 kb on - strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.326 kb on + strand, within DZA65_RS00610 at 141.327 kb on - strand, within DZA65_RS00610 at 141.381 kb on - strand, within DZA65_RS00610 at 141.502 kb on + strand, within DZA65_RS00610 at 141.502 kb on + strand, within DZA65_RS00610 at 141.502 kb on + strand at 141.502 kb on + strand, within DZA65_RS00610 at 141.503 kb on - strand, within DZA65_RS00610 at 141.503 kb on - strand, within DZA65_RS00610 at 141.503 kb on - strand, within DZA65_RS00610 at 141.590 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.600 kb on + strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.601 kb on - strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.602 kb on + strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.603 kb on - strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.605 kb on + strand, within DZA65_RS00610 at 141.606 kb on - strand, within DZA65_RS00610 at 141.606 kb on - strand, within DZA65_RS00610 at 141.606 kb on - strand, within DZA65_RS00610 at 141.606 kb on - strand, within DZA65_RS00610 at 141.618 kb on - strand, within DZA65_RS00610 at 141.618 kb on - strand, within DZA65_RS00610 at 141.618 kb on - strand, within DZA65_RS00610 at 141.618 kb on - strand, within DZA65_RS00610 at 141.745 kb on - strand at 141.745 kb on - strand at 141.751 kb on + strand at 141.751 kb on + strand at 141.751 kb on + strand at 141.751 kb on + strand at 141.752 kb on - strand at 141.752 kb on - strand at 141.752 kb on - strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand at 141.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 139,228 + +0.6 139,228 + +0.7 139,250 + -0.8 139,250 + -0.8 139,250 + -0.4 139,250 + -1.0 139,250 + -0.4 139,250 + -0.8 139,250 + -2.8 139,251 - -0.7 139,251 - -0.2 139,251 - -1.7 139,251 - -1.2 139,251 - -0.7 139,251 - -1.8 139,251 - -0.1 139,251 - +1.0 139,251 - -1.2 139,283 + +0.8 139,283 + -0.2 139,318 + -1.7 139,318 + +0.5 139,318 + -0.8 139,318 + -1.3 139,318 + +0.4 139,318 + -1.1 139,318 + +0.1 139,318 + +0.0 139,318 + -0.4 139,319 - +0.4 139,319 - -0.6 139,319 - +1.1 139,319 - -0.0 139,319 - -1.0 139,319 - +0.5 139,319 - -0.5 139,319 - +1.3 139,319 - -2.2 139,319 - -1.2 139,493 - DZA65_RS00600 0.20 -0.6 139,608 + DZA65_RS00600 0.33 +0.3 139,608 + DZA65_RS00600 0.33 +0.4 139,608 + DZA65_RS00600 0.33 -0.2 139,608 + DZA65_RS00600 0.33 -1.6 139,609 - DZA65_RS00600 0.33 -0.2 139,609 - DZA65_RS00600 0.33 +0.2 139,609 - DZA65_RS00600 0.33 -1.5 139,611 + DZA65_RS00600 0.33 -0.8 139,612 - DZA65_RS00600 0.34 +1.8 139,612 - DZA65_RS00600 0.34 -0.2 139,612 - DZA65_RS00600 0.34 +0.2 139,612 - DZA65_RS00600 0.34 -1.8 139,612 - DZA65_RS00600 0.34 -1.8 139,612 - DZA65_RS00600 0.34 +0.2 139,612 - DZA65_RS00600 0.34 -0.6 139,612 - DZA65_RS00600 0.34 -0.1 139,612 - DZA65_RS00600 0.34 -0.3 139,612 - DZA65_RS00600 0.34 +0.2 139,705 - DZA65_RS00600 0.44 -0.8 139,705 - DZA65_RS00600 0.44 +0.9 139,887 + DZA65_RS00600 0.64 -1.6 140,209 + -0.1 140,209 + -0.8 140,210 - +0.3 140,210 - -1.0 140,485 - DZA65_RS00605 0.33 +0.8 140,618 + DZA65_RS00605 0.49 -0.4 140,618 + DZA65_RS00605 0.49 -1.8 140,619 - DZA65_RS00605 0.49 +0.3 140,619 - DZA65_RS00605 0.49 -1.6 140,619 - DZA65_RS00605 0.49 -2.3 140,654 - DZA65_RS00605 0.53 -0.8 140,887 + DZA65_RS00605 0.82 +0.5 140,887 + DZA65_RS00605 0.82 +0.2 140,888 - DZA65_RS00605 0.82 -0.4 140,888 - DZA65_RS00605 0.82 -1.0 140,888 - DZA65_RS00605 0.82 +0.3 140,888 - DZA65_RS00605 0.82 +1.2 140,888 - DZA65_RS00605 0.82 +0.6 140,930 + DZA65_RS00605 0.87 -1.0 140,931 - DZA65_RS00605 0.87 -2.3 140,931 - DZA65_RS00605 0.87 -0.8 140,931 - DZA65_RS00605 0.87 -0.6 140,931 - DZA65_RS00605 0.87 +0.0 140,931 - DZA65_RS00605 0.87 -1.0 140,931 - DZA65_RS00605 0.87 -0.6 140,931 - DZA65_RS00605 0.87 -0.8 140,947 + DZA65_RS00605 0.89 -0.6 140,947 + DZA65_RS00605 0.89 +0.8 140,947 + DZA65_RS00605 0.89 -0.6 140,947 + DZA65_RS00605 0.89 -1.1 140,948 - DZA65_RS00605 0.89 +0.5 140,949 + DZA65_RS00605 0.89 -2.6 140,950 - DZA65_RS00605 0.89 -1.4 140,950 - DZA65_RS00605 0.89 -0.6 140,997 + +0.9 141,045 - -0.7 141,045 - -0.9 141,164 + DZA65_RS00610 0.17 +1.2 141,191 + DZA65_RS00610 0.21 -0.8 141,191 + DZA65_RS00610 0.21 -0.8 141,292 - DZA65_RS00610 0.34 -0.2 141,292 - DZA65_RS00610 0.34 -0.7 141,292 - DZA65_RS00610 0.34 +0.5 141,326 + DZA65_RS00610 0.39 -2.8 141,326 + DZA65_RS00610 0.39 -1.0 141,326 + DZA65_RS00610 0.39 -0.2 141,326 + DZA65_RS00610 0.39 +1.8 141,326 + DZA65_RS00610 0.39 +0.9 141,326 + DZA65_RS00610 0.39 -0.3 141,327 - DZA65_RS00610 0.39 -0.2 141,381 - DZA65_RS00610 0.46 -0.8 141,502 + DZA65_RS00610 0.62 -0.4 141,502 + DZA65_RS00610 0.62 -1.2 141,502 + +1.8 141,502 + DZA65_RS00610 0.62 -1.4 141,503 - DZA65_RS00610 0.63 -1.8 141,503 - DZA65_RS00610 0.63 -0.0 141,503 - DZA65_RS00610 0.63 +0.2 141,590 + DZA65_RS00610 0.74 -1.6 141,600 + DZA65_RS00610 0.76 +0.9 141,600 + DZA65_RS00610 0.76 -0.3 141,600 + DZA65_RS00610 0.76 -1.6 141,600 + DZA65_RS00610 0.76 -0.6 141,600 + DZA65_RS00610 0.76 -0.2 141,600 + DZA65_RS00610 0.76 -0.9 141,600 + +2.3 141,600 + DZA65_RS00610 0.76 -0.7 141,600 + DZA65_RS00610 0.76 -1.4 141,600 + DZA65_RS00610 0.76 -0.3 141,600 + DZA65_RS00610 0.76 -0.2 141,600 + DZA65_RS00610 0.76 -1.0 141,600 + DZA65_RS00610 0.76 -2.6 141,600 + DZA65_RS00610 0.76 -0.2 141,600 + DZA65_RS00610 0.76 +0.2 141,600 + DZA65_RS00610 0.76 +0.2 141,600 + DZA65_RS00610 0.76 -0.0 141,600 + DZA65_RS00610 0.76 -0.2 141,600 + DZA65_RS00610 0.76 -0.1 141,600 + DZA65_RS00610 0.76 +0.0 141,600 + DZA65_RS00610 0.76 +0.3 141,600 + DZA65_RS00610 0.76 -1.0 141,600 + DZA65_RS00610 0.76 -2.2 141,600 + DZA65_RS00610 0.76 -1.6 141,600 + DZA65_RS00610 0.76 -0.0 141,600 + DZA65_RS00610 0.76 +0.2 141,600 + DZA65_RS00610 0.76 -0.0 141,600 + DZA65_RS00610 0.76 +1.8 141,600 + DZA65_RS00610 0.76 +0.9 141,600 + DZA65_RS00610 0.76 -0.4 141,600 + DZA65_RS00610 0.76 +1.0 141,601 - DZA65_RS00610 0.76 +0.4 141,601 - DZA65_RS00610 0.76 +1.8 141,601 - DZA65_RS00610 0.76 -1.6 141,601 - DZA65_RS00610 0.76 +0.2 141,601 - DZA65_RS00610 0.76 +0.8 141,601 - DZA65_RS00610 0.76 -0.2 141,601 - +0.8 141,601 - DZA65_RS00610 0.76 -0.6 141,601 - DZA65_RS00610 0.76 +0.1 141,601 - DZA65_RS00610 0.76 -0.0 141,601 - DZA65_RS00610 0.76 -1.9 141,601 - DZA65_RS00610 0.76 -1.4 141,601 - DZA65_RS00610 0.76 -0.8 141,601 - DZA65_RS00610 0.76 +0.0 141,601 - DZA65_RS00610 0.76 -2.3 141,601 - DZA65_RS00610 0.76 -0.4 141,601 - DZA65_RS00610 0.76 +0.1 141,601 - DZA65_RS00610 0.76 +0.6 141,601 - DZA65_RS00610 0.76 +0.0 141,601 - DZA65_RS00610 0.76 -1.7 141,601 - DZA65_RS00610 0.76 +0.8 141,601 - DZA65_RS00610 0.76 +0.2 141,601 - DZA65_RS00610 0.76 -0.6 141,602 + DZA65_RS00610 0.76 -1.0 141,602 + DZA65_RS00610 0.76 +0.2 141,602 + DZA65_RS00610 0.76 +0.5 141,602 + DZA65_RS00610 0.76 -1.6 141,602 + DZA65_RS00610 0.76 -0.1 141,602 + DZA65_RS00610 0.76 -0.7 141,602 + DZA65_RS00610 0.76 +0.9 141,602 + DZA65_RS00610 0.76 -0.7 141,602 + DZA65_RS00610 0.76 -1.4 141,602 + DZA65_RS00610 0.76 -0.5 141,603 - DZA65_RS00610 0.76 -0.2 141,603 - DZA65_RS00610 0.76 -0.1 141,603 - +1.3 141,603 - DZA65_RS00610 0.76 +0.8 141,603 - DZA65_RS00610 0.76 -2.5 141,603 - DZA65_RS00610 0.76 +0.5 141,603 - DZA65_RS00610 0.76 -0.8 141,603 - DZA65_RS00610 0.76 -0.4 141,605 + DZA65_RS00610 0.76 -0.6 141,605 + DZA65_RS00610 0.76 -1.3 141,605 + DZA65_RS00610 0.76 -1.9 141,605 + DZA65_RS00610 0.76 -1.8 141,605 + DZA65_RS00610 0.76 -3.0 141,605 + DZA65_RS00610 0.76 -0.5 141,606 - DZA65_RS00610 0.77 -0.8 141,606 - DZA65_RS00610 0.77 +0.2 141,606 - DZA65_RS00610 0.77 -1.4 141,606 - DZA65_RS00610 0.77 -0.1 141,618 - DZA65_RS00610 0.78 -0.0 141,618 - DZA65_RS00610 0.78 -0.1 141,618 - DZA65_RS00610 0.78 -0.2 141,618 - DZA65_RS00610 0.78 -0.6 141,745 - -1.2 141,745 - +0.5 141,751 + +0.3 141,751 + +0.2 141,751 + +1.3 141,751 + -1.6 141,752 - -0.2 141,752 - -2.4 141,752 - -0.6 141,783 + -1.4 141,783 + +0.2 141,783 + -0.2 141,783 + +0.2 141,783 + -0.2 141,783 + +0.6 141,783 + -0.0 141,783 + -0.4 141,783 + -0.2 141,783 + +1.4 141,783 + -1.7 141,783 + -0.6 141,783 + -0.2 141,784 - -0.8 141,784 - +1.2 141,784 - -0.2 141,784 - -0.5 141,784 - -0.6 141,784 - -1.1 141,784 - -0.1 141,784 - -1.2
Or see this region's nucleotide sequence