Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00535 and DZA65_RS00540 are separated by 98 nucleotides DZA65_RS00540 and DZA65_RS00545 are separated by 7 nucleotides DZA65_RS00545 and DZA65_RS00550 are separated by 499 nucleotides
DZA65_RS00535: DZA65_RS00535 - helix-turn-helix transcriptional regulator, at 124,702 to 125,055
_RS00535
DZA65_RS00540: DZA65_RS00540 - transcriptional regulator, at 125,154 to 125,411
_RS00540
DZA65_RS00545: DZA65_RS00545 - helix-turn-helix transcriptional regulator, at 125,419 to 125,751
_RS00545
DZA65_RS00550: DZA65_RS00550 - IS630 family transposase, at 126,251 to 127,288
_RS00550
Position (kb) 125
126 Strain fitness (log2 ratio) -2
-1
0
1
2 at 124.435 kb on + strand at 124.440 kb on + strand at 124.440 kb on + strand at 124.440 kb on + strand at 124.440 kb on + strand at 124.440 kb on + strand at 124.441 kb on - strand at 124.441 kb on - strand at 124.499 kb on + strand at 124.502 kb on + strand at 124.526 kb on + strand at 124.526 kb on + strand at 124.527 kb on - strand at 124.530 kb on + strand at 124.530 kb on + strand at 124.530 kb on + strand at 124.530 kb on + strand at 124.531 kb on - strand at 124.531 kb on - strand at 124.531 kb on - strand at 124.531 kb on - strand at 124.531 kb on - strand at 124.554 kb on + strand at 124.554 kb on + strand at 124.554 kb on + strand at 124.617 kb on - strand at 124.635 kb on - strand at 124.636 kb on + strand at 124.636 kb on + strand at 124.637 kb on - strand at 124.637 kb on - strand at 124.650 kb on + strand at 124.685 kb on + strand at 124.685 kb on + strand at 124.686 kb on - strand at 124.703 kb on + strand at 124.703 kb on + strand at 124.835 kb on + strand, within DZA65_RS00535 at 124.835 kb on + strand, within DZA65_RS00535 at 124.836 kb on - strand, within DZA65_RS00535 at 124.924 kb on - strand, within DZA65_RS00535 at 124.932 kb on + strand, within DZA65_RS00535 at 124.933 kb on - strand, within DZA65_RS00535 at 125.010 kb on + strand, within DZA65_RS00535 at 125.010 kb on + strand, within DZA65_RS00535 at 125.011 kb on - strand, within DZA65_RS00535 at 125.037 kb on - strand at 125.037 kb on - strand at 125.104 kb on + strand at 125.129 kb on + strand at 125.130 kb on - strand at 125.130 kb on - strand at 125.180 kb on + strand, within DZA65_RS00540 at 125.180 kb on + strand, within DZA65_RS00540 at 125.180 kb on + strand, within DZA65_RS00540 at 125.180 kb on + strand, within DZA65_RS00540 at 125.181 kb on - strand, within DZA65_RS00540 at 125.181 kb on - strand, within DZA65_RS00540 at 125.181 kb on - strand, within DZA65_RS00540 at 125.181 kb on - strand, within DZA65_RS00540 at 125.181 kb on - strand, within DZA65_RS00540 at 125.181 kb on - strand, within DZA65_RS00540 at 125.181 kb on - strand, within DZA65_RS00540 at 125.181 kb on - strand, within DZA65_RS00540 at 125.207 kb on + strand, within DZA65_RS00540 at 125.207 kb on + strand, within DZA65_RS00540 at 125.207 kb on + strand, within DZA65_RS00540 at 125.207 kb on + strand, within DZA65_RS00540 at 125.207 kb on + strand, within DZA65_RS00540 at 125.207 kb on + strand, within DZA65_RS00540 at 125.207 kb on + strand, within DZA65_RS00540 at 125.208 kb on - strand, within DZA65_RS00540 at 125.208 kb on - strand, within DZA65_RS00540 at 125.208 kb on - strand, within DZA65_RS00540 at 125.335 kb on + strand, within DZA65_RS00540 at 125.350 kb on - strand, within DZA65_RS00540 at 125.352 kb on + strand, within DZA65_RS00540 at 125.352 kb on + strand, within DZA65_RS00540 at 125.352 kb on + strand, within DZA65_RS00540 at 125.352 kb on + strand, within DZA65_RS00540 at 125.352 kb on + strand, within DZA65_RS00540 at 125.352 kb on + strand, within DZA65_RS00540 at 125.353 kb on - strand, within DZA65_RS00540 at 125.353 kb on - strand, within DZA65_RS00540 at 125.353 kb on - strand, within DZA65_RS00540 at 125.353 kb on - strand, within DZA65_RS00540 at 125.393 kb on - strand at 125.430 kb on + strand at 125.430 kb on + strand at 125.431 kb on - strand at 125.440 kb on - strand at 125.440 kb on - strand at 125.446 kb on + strand at 125.531 kb on + strand, within DZA65_RS00545 at 125.531 kb on + strand, within DZA65_RS00545 at 125.531 kb on + strand, within DZA65_RS00545 at 125.531 kb on + strand, within DZA65_RS00545 at 125.531 kb on + strand, within DZA65_RS00545 at 125.532 kb on - strand, within DZA65_RS00545 at 125.532 kb on - strand, within DZA65_RS00545 at 125.532 kb on - strand, within DZA65_RS00545 at 125.532 kb on - strand, within DZA65_RS00545 at 125.537 kb on + strand, within DZA65_RS00545 at 125.537 kb on + strand, within DZA65_RS00545 at 125.538 kb on - strand, within DZA65_RS00545 at 125.538 kb on - strand, within DZA65_RS00545 at 125.538 kb on - strand, within DZA65_RS00545 at 125.538 kb on - strand, within DZA65_RS00545 at 125.586 kb on + strand, within DZA65_RS00545 at 125.587 kb on - strand, within DZA65_RS00545 at 125.587 kb on - strand, within DZA65_RS00545 at 125.613 kb on - strand, within DZA65_RS00545 at 125.619 kb on + strand, within DZA65_RS00545 at 125.620 kb on - strand, within DZA65_RS00545 at 125.692 kb on + strand, within DZA65_RS00545 at 125.745 kb on + strand at 125.745 kb on + strand at 125.745 kb on + strand at 125.745 kb on + strand at 125.746 kb on - strand at 125.767 kb on - strand at 125.823 kb on + strand at 125.823 kb on + strand at 125.824 kb on - strand at 125.854 kb on + strand at 125.855 kb on - strand at 125.855 kb on - strand at 125.856 kb on + strand at 125.857 kb on - strand at 125.857 kb on - strand at 125.857 kb on - strand at 125.859 kb on + strand at 125.859 kb on + strand at 125.860 kb on - strand at 125.893 kb on + strand at 125.894 kb on - strand at 125.939 kb on + strand at 125.945 kb on + strand at 125.946 kb on - strand at 125.974 kb on + strand at 125.975 kb on - strand at 125.978 kb on + strand at 125.979 kb on - strand at 125.979 kb on - strand at 125.989 kb on + strand at 125.989 kb on + strand at 125.990 kb on - strand at 125.990 kb on - strand at 126.001 kb on + strand at 126.001 kb on + strand at 126.001 kb on + strand at 126.001 kb on + strand at 126.001 kb on + strand at 126.002 kb on - strand at 126.002 kb on - strand at 126.002 kb on - strand at 126.002 kb on - strand at 126.002 kb on - strand at 126.002 kb on - strand at 126.005 kb on + strand at 126.005 kb on + strand at 126.005 kb on + strand at 126.005 kb on + strand at 126.006 kb on - strand at 126.006 kb on - strand at 126.018 kb on - strand at 126.022 kb on + strand at 126.022 kb on + strand at 126.022 kb on + strand at 126.023 kb on - strand at 126.023 kb on - strand at 126.101 kb on + strand at 126.102 kb on - strand at 126.102 kb on - strand at 126.105 kb on + strand at 126.105 kb on + strand at 126.105 kb on + strand at 126.106 kb on - strand at 126.106 kb on - strand at 126.106 kb on - strand at 126.106 kb on - strand at 126.106 kb on - strand at 126.149 kb on + strand at 126.149 kb on + strand at 126.150 kb on - strand at 126.150 kb on - strand at 126.150 kb on - strand at 126.150 kb on - strand at 126.150 kb on - strand at 126.156 kb on + strand at 126.162 kb on + strand at 126.162 kb on + strand at 126.162 kb on + strand at 126.162 kb on + strand at 126.162 kb on + strand at 126.163 kb on - strand at 126.163 kb on - strand at 126.163 kb on - strand at 126.163 kb on - strand at 126.163 kb on - strand at 126.236 kb on - strand at 126.236 kb on - strand at 126.236 kb on - strand at 126.236 kb on - strand at 126.236 kb on - strand at 126.240 kb on - strand at 126.240 kb on - strand at 126.240 kb on - strand at 126.240 kb on - strand at 126.240 kb on - strand at 126.250 kb on - strand at 126.250 kb on - strand at 126.250 kb on - strand at 126.250 kb on - strand at 126.250 kb on - strand at 126.253 kb on - strand at 126.253 kb on - strand at 126.266 kb on - strand at 126.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 124,435 + +0.3 124,440 + -2.4 124,440 + -0.4 124,440 + -0.7 124,440 + -0.6 124,440 + -1.2 124,441 - -0.8 124,441 - -0.2 124,499 + +0.6 124,502 + +0.2 124,526 + -1.6 124,526 + -0.4 124,527 - -0.2 124,530 + +0.6 124,530 + -1.8 124,530 + -0.0 124,530 + -1.6 124,531 - -1.2 124,531 - +0.3 124,531 - -1.4 124,531 - -0.1 124,531 - -0.3 124,554 + +0.0 124,554 + +0.2 124,554 + -0.2 124,617 - +0.2 124,635 - +0.6 124,636 + -1.1 124,636 + +1.0 124,637 - +0.3 124,637 - -0.3 124,650 + -0.6 124,685 + +1.4 124,685 + -1.0 124,686 - +0.4 124,703 + -1.0 124,703 + -0.7 124,835 + DZA65_RS00535 0.38 +0.2 124,835 + DZA65_RS00535 0.38 +0.8 124,836 - DZA65_RS00535 0.38 -1.2 124,924 - DZA65_RS00535 0.63 -0.5 124,932 + DZA65_RS00535 0.65 -0.2 124,933 - DZA65_RS00535 0.65 +1.5 125,010 + DZA65_RS00535 0.87 -0.6 125,010 + DZA65_RS00535 0.87 +0.4 125,011 - DZA65_RS00535 0.87 -0.4 125,037 - +0.5 125,037 - -1.9 125,104 + -0.1 125,129 + -2.0 125,130 - +0.4 125,130 - -1.4 125,180 + DZA65_RS00540 0.10 +1.2 125,180 + DZA65_RS00540 0.10 +0.2 125,180 + DZA65_RS00540 0.10 +1.8 125,180 + DZA65_RS00540 0.10 -2.0 125,181 - DZA65_RS00540 0.10 -0.2 125,181 - DZA65_RS00540 0.10 -0.5 125,181 - DZA65_RS00540 0.10 +0.5 125,181 - DZA65_RS00540 0.10 +0.2 125,181 - DZA65_RS00540 0.10 -1.6 125,181 - DZA65_RS00540 0.10 -0.6 125,181 - DZA65_RS00540 0.10 -0.4 125,181 - DZA65_RS00540 0.10 -0.1 125,207 + DZA65_RS00540 0.21 +0.8 125,207 + DZA65_RS00540 0.21 -0.8 125,207 + DZA65_RS00540 0.21 -0.9 125,207 + DZA65_RS00540 0.21 +1.2 125,207 + DZA65_RS00540 0.21 +0.8 125,207 + DZA65_RS00540 0.21 -0.4 125,207 + DZA65_RS00540 0.21 +0.2 125,208 - DZA65_RS00540 0.21 -1.5 125,208 - DZA65_RS00540 0.21 -0.2 125,208 - DZA65_RS00540 0.21 +0.1 125,335 + DZA65_RS00540 0.70 +0.5 125,350 - DZA65_RS00540 0.76 +1.8 125,352 + DZA65_RS00540 0.77 -2.1 125,352 + DZA65_RS00540 0.77 -0.6 125,352 + DZA65_RS00540 0.77 +0.6 125,352 + DZA65_RS00540 0.77 +0.2 125,352 + DZA65_RS00540 0.77 -0.4 125,352 + DZA65_RS00540 0.77 -1.6 125,353 - DZA65_RS00540 0.77 +0.2 125,353 - DZA65_RS00540 0.77 +0.2 125,353 - DZA65_RS00540 0.77 +1.4 125,353 - DZA65_RS00540 0.77 +0.7 125,393 - -1.4 125,430 + -0.5 125,430 + -0.4 125,431 - +1.5 125,440 - +0.2 125,440 - +1.8 125,446 + +0.2 125,531 + DZA65_RS00545 0.34 -1.9 125,531 + DZA65_RS00545 0.34 -0.5 125,531 + DZA65_RS00545 0.34 +0.4 125,531 + DZA65_RS00545 0.34 +1.3 125,531 + DZA65_RS00545 0.34 -1.2 125,532 - DZA65_RS00545 0.34 +0.8 125,532 - DZA65_RS00545 0.34 -0.8 125,532 - DZA65_RS00545 0.34 -0.6 125,532 - DZA65_RS00545 0.34 +0.8 125,537 + DZA65_RS00545 0.35 -0.0 125,537 + DZA65_RS00545 0.35 -0.9 125,538 - DZA65_RS00545 0.36 +0.7 125,538 - DZA65_RS00545 0.36 -0.4 125,538 - DZA65_RS00545 0.36 -2.6 125,538 - DZA65_RS00545 0.36 +0.2 125,586 + DZA65_RS00545 0.50 +0.6 125,587 - DZA65_RS00545 0.50 -0.5 125,587 - DZA65_RS00545 0.50 +0.2 125,613 - DZA65_RS00545 0.58 +0.5 125,619 + DZA65_RS00545 0.60 -0.0 125,620 - DZA65_RS00545 0.60 +0.4 125,692 + DZA65_RS00545 0.82 +0.0 125,745 + -0.6 125,745 + -1.7 125,745 + +0.8 125,745 + +0.2 125,746 - -0.0 125,767 - -0.7 125,823 + -0.2 125,823 + -0.8 125,824 - +1.0 125,854 + +0.8 125,855 - -1.0 125,855 - -1.0 125,856 + -1.7 125,857 - +0.1 125,857 - -1.0 125,857 - -1.6 125,859 + -0.6 125,859 + -0.1 125,860 - +0.4 125,893 + -2.0 125,894 - -0.8 125,939 + +0.2 125,945 + -1.2 125,946 - +1.8 125,974 + -1.9 125,975 - -0.8 125,978 + -0.4 125,979 - -1.6 125,979 - -1.8 125,989 + +0.3 125,989 + -1.9 125,990 - -0.1 125,990 - -0.4 126,001 + +0.2 126,001 + -1.0 126,001 + -1.0 126,001 + -0.0 126,001 + -1.0 126,002 - -0.6 126,002 - -0.8 126,002 - -1.1 126,002 - +0.6 126,002 - -1.3 126,002 - -0.6 126,005 + +0.1 126,005 + +0.5 126,005 + -1.8 126,005 + -0.6 126,006 - -0.2 126,006 - +0.3 126,018 - +0.3 126,022 + +0.3 126,022 + -1.4 126,022 + -0.4 126,023 - -1.7 126,023 - -0.2 126,101 + -1.2 126,102 - -0.6 126,102 - +0.0 126,105 + -0.2 126,105 + +1.3 126,105 + -0.4 126,106 - +2.2 126,106 - -0.4 126,106 - -1.0 126,106 - -0.8 126,106 - +0.8 126,149 + +0.6 126,149 + -1.7 126,150 - +1.0 126,150 - -0.0 126,150 - -1.4 126,150 - -0.1 126,150 - -0.7 126,156 + -0.2 126,162 + -0.7 126,162 + -0.6 126,162 + -1.4 126,162 + -0.8 126,162 + -0.6 126,163 - +0.8 126,163 - +0.6 126,163 - +1.0 126,163 - -0.0 126,163 - +1.8 126,236 - -0.8 126,236 - -2.2 126,236 - -1.5 126,236 - +0.1 126,236 - -1.6 126,240 - +0.5 126,240 - -0.6 126,240 - +0.2 126,240 - -0.7 126,240 - +0.6 126,250 - +1.3 126,250 - -1.4 126,250 - +1.0 126,250 - +0.8 126,250 - -1.0 126,253 - -0.7 126,253 - -0.2 126,266 - +0.3 126,266 - -1.0
Or see this region's nucleotide sequence