Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00515

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	LB
				remove
121,348	+			-0.2
121,349	-	DZA65_RS00510	0.36	+0.2
121,349	-	DZA65_RS00510	0.36	-0.8
121,349	-	DZA65_RS00510	0.36	-0.8
121,394	+	DZA65_RS00510	0.50	-1.6
121,407	+	DZA65_RS00510	0.54	-0.5
121,466	+	DZA65_RS00510	0.73	+0.2
121,466	+	DZA65_RS00510	0.73	-0.8
121,467	-			+1.2
121,467	-	DZA65_RS00510	0.74	+0.4
121,467	-	DZA65_RS00510	0.74	-0.8
121,467	-	DZA65_RS00510	0.74	-0.0
121,467	-	DZA65_RS00510	0.74	-0.3
121,505	+	DZA65_RS00510	0.86	-0.6
121,505	+	DZA65_RS00510	0.86	+0.6
121,506	-	DZA65_RS00510	0.86	-1.4
121,507	+	DZA65_RS00510	0.87	+1.2
121,507	+	DZA65_RS00510	0.87	-0.2
121,507	+	DZA65_RS00510	0.87	+1.3
121,507	+	DZA65_RS00510	0.87	+0.3
121,507	+	DZA65_RS00510	0.87	-2.2
121,507	+	DZA65_RS00510	0.87	+0.8
121,507	+	DZA65_RS00510	0.87	-0.4
121,507	+	DZA65_RS00510	0.87	+0.4
121,507	+			+0.8
121,507	+	DZA65_RS00510	0.87	-2.0
121,507	+	DZA65_RS00510	0.87	-0.6
121,508	-	DZA65_RS00510	0.87	-0.2
121,508	-	DZA65_RS00510	0.87	-0.3
121,508	-	DZA65_RS00510	0.87	+0.1
121,508	-	DZA65_RS00510	0.87	+1.0
121,508	-	DZA65_RS00510	0.87	+0.4
121,508	-	DZA65_RS00510	0.87	-1.6
121,508	-	DZA65_RS00510	0.87	-1.2
121,508	-	DZA65_RS00510	0.87	+0.2
121,508	-	DZA65_RS00510	0.87	-0.8
121,508	-	DZA65_RS00510	0.87	+1.0
121,508	-	DZA65_RS00510	0.87	-0.4
121,508	-	DZA65_RS00510	0.87	-0.6
121,508	-	DZA65_RS00510	0.87	-0.8
121,508	-	DZA65_RS00510	0.87	-0.8
121,529	+			-0.7
121,529	+			-1.2
121,529	+			-0.0
121,529	+			+0.6
121,529	+			-0.2
121,530	-			-0.2
121,540	+			-0.5
121,551	-			-1.6
121,551	-			-0.1
121,559	+			+0.8
121,559	+			+0.4
121,559	+			-1.3
121,560	-			+0.5
121,580	+			-0.1
121,580	+			-0.2
121,581	-			-1.3
121,581	-			-0.2
121,581	-			-1.4
121,581	-			+0.2
121,583	-			-1.0
121,583	-			-0.6
121,643	+			-1.9
121,643	+			-1.8
121,644	-			-1.0
121,661	-			+0.0
121,669	+			+1.2
121,671	+			+0.3
121,671	+			-1.5
121,671	+			+2.0
121,671	+			-0.6
121,671	+			-1.7
121,672	-			-0.2
121,672	-			-0.3
121,672	-			+0.1
121,676	+			+0.8
121,677	-			-0.0
121,684	+			-0.8
121,684	+			+0.0
121,688	+			-0.2
121,688	+			+1.0
121,688	+			-1.2
121,688	+			-0.5
121,688	+			+0.2
121,688	+			+0.6
121,688	+			+0.8
121,688	+			+2.0
121,694	-			-1.0
121,704	+			-2.0
121,704	+			+0.4
121,704	+			-0.4
121,704	+			-2.5
121,704	+			-0.2
121,704	+			+0.4
121,705	-			-0.2
121,705	-			+1.3
121,705	-			-1.0
121,705	-			+0.6
121,705	-			+0.2
121,705	-			-0.4
121,705	-			-1.9
121,705	-			-1.6
121,705	-			-1.8
121,705	-			-0.2
121,708	+			+1.8
121,708	+			-0.1
121,708	+			-0.2
121,708	+			-0.4
121,708	+			+0.5
121,708	+			-1.4
121,709	-			-1.0
121,749	-			-0.9
121,749	-			+0.5
121,773	+			-1.2
121,774	-			+1.8
121,775	+			-1.0
121,776	-			+1.6
121,776	-			-0.5
121,786	-			-0.2
121,808	+			-1.7
121,808	+			+1.1
121,808	+			-1.6
121,808	+			-0.2
121,808	+			+0.1
121,809	-			-1.2
121,809	-			-0.2
121,809	-			+0.8
121,809	-			+1.8
121,809	-			-0.5
121,825	+			-0.2
121,825	+			-0.3
121,826	-			+0.2
121,826	-			-0.8
121,860	-			-0.4
121,860	-			-0.4
121,933	+			-1.4
121,934	-			-0.7
121,934	-			+0.8
121,934	-			+0.2
121,934	-			-0.4
121,934	-			-1.0
121,935	+			-1.4
121,935	+			-0.6
121,936	-			-0.2
121,936	-			-0.6
121,936	-			-0.2
121,936	-			+0.2
121,936	-			+0.5
121,941	+			-0.8
121,941	+			-1.1
121,941	+			-2.8
121,941	+			+0.1
121,941	+			-1.8
121,941	+			-0.7
121,941	+			-1.0
121,941	+			-0.6
121,941	+			+0.0
121,941	+			-0.8
121,942	-			-1.7
121,942	-			-0.2
121,942	-			-1.4
121,942	-			-1.1
121,942	-			-0.3
121,942	-			-0.0
121,942	-			-0.2
121,942	-			-1.9
121,942	-			-0.5
121,943	+			+0.8
121,943	+			-1.0
121,943	+			+0.2
121,943	+			+0.8
121,943	+			-1.2
121,943	+			+0.1
121,943	+			+0.6
121,943	+			-0.7
121,943	+			+0.0
121,943	+			-1.0
121,943	+			-1.4
121,943	+			+0.4
121,943	+			+0.2
121,943	+			-0.0
121,944	-			+0.5
121,944	-			-0.0
121,944	-			+0.5
121,944	-			-0.4
121,944	-			-0.9
121,944	-			+0.4
121,944	-			+0.3
121,944	-			-0.7
121,944	-			-0.8
121,945	+			+0.0
121,945	+			-1.4
121,945	+			-1.4
121,945	+			-0.2
121,946	-			-0.6
121,946	-			-1.0
121,966	+			-0.4
121,966	+			-0.4
121,966	+			+0.4
121,972	+			-0.2
121,972	+			-0.0
121,973	-			+0.4
121,973	-			-0.2
121,973	-			-0.6
121,973	-			+1.8
121,973	-			-1.0
121,973	-			+1.0
122,055	+			-1.3
122,082	+			-0.2
122,093	+			-0.8
122,099	+			-1.7
122,107	+			-1.4
122,108	-			-1.5
122,108	-			-1.2
122,111	+			+0.0
122,114	+			-0.7
122,114	+			+1.0
122,240	-			+0.0
122,245	+			+0.4
122,253	+			-0.1
122,253	+			-0.2
122,256	+			+0.4
122,256	+			-0.2
122,256	+			-1.4
122,256	+			-0.8
122,258	+			-0.6
122,258	+			+1.8
122,259	-			-0.8
122,259	-			-0.0
122,320	+			-1.6
122,320	+			-1.2
122,321	-			-1.0
122,321	-			+0.2
122,321	-			+0.0
122,321	-			-1.8
122,366	+			-0.7
122,405	+	DZA65_RS00515	0.12	+0.0
122,406	-	DZA65_RS00515	0.12	-0.0
122,411	+	DZA65_RS00515	0.13	-0.0
122,415	+	DZA65_RS00515	0.13	+0.2
122,482	+	DZA65_RS00515	0.22	-2.0
122,494	+	DZA65_RS00515	0.24	-0.7
122,501	+	DZA65_RS00515	0.25	-0.2
122,645	-	DZA65_RS00515	0.44	+0.2
122,645	-	DZA65_RS00515	0.44	+0.5
122,669	-	DZA65_RS00515	0.47	-2.3
122,692	+	DZA65_RS00515	0.50	-1.1
122,692	+	DZA65_RS00515	0.50	+0.3
122,693	-	DZA65_RS00515	0.50	-0.0
122,693	-	DZA65_RS00515	0.50	+0.2
122,693	-	DZA65_RS00515	0.50	-0.2
122,693	-	DZA65_RS00515	0.50	-1.2
122,693	-	DZA65_RS00515	0.50	-1.1
122,698	-	DZA65_RS00515	0.51	-0.7
122,743	+	DZA65_RS00515	0.57	-0.2
122,830	+	DZA65_RS00515	0.68	-0.2
122,831	-	DZA65_RS00515	0.69	-1.1
122,831	-	DZA65_RS00515	0.69	-0.5
122,831	-	DZA65_RS00515	0.69	-3.0
122,831	-	DZA65_RS00515	0.69	-0.9
122,921	-	DZA65_RS00515	0.80	-0.6
122,942	-	DZA65_RS00515	0.83	-0.4
123,065	+			-0.1
123,065	+			-0.4
123,066	-			-0.1
123,066	-			-0.7
123,090	+			-0.8
123,098	+	DZA65_RS00520	0.10	+2.0
123,098	+	DZA65_RS00520	0.10	+0.8
123,098	+	DZA65_RS00520	0.10	-0.6
123,099	-	DZA65_RS00520	0.10	-1.8
123,099	-	DZA65_RS00520	0.10	-0.2
123,099	-	DZA65_RS00520	0.10	-0.0
123,219	+	DZA65_RS00520	0.29	-1.2
123,219	+	DZA65_RS00520	0.29	-0.6
123,265	+	DZA65_RS00520	0.36	-0.2
123,265	+	DZA65_RS00520	0.36	+0.2
123,385	+	DZA65_RS00520	0.55	-0.8
123,386	-	DZA65_RS00520	0.55	-2.6
123,386	-	DZA65_RS00520	0.55	-0.4
123,476	+	DZA65_RS00520	0.69	-0.7
123,477	-	DZA65_RS00520	0.69	-0.2
123,511	+	DZA65_RS00520	0.75	-1.4
123,511	+	DZA65_RS00520	0.75	-1.4
123,532	+	DZA65_RS00520	0.78	-1.6
123,533	-	DZA65_RS00520	0.78	-0.2
123,533	-	DZA65_RS00520	0.78	-0.2
123,587	+	DZA65_RS00520	0.87	-1.0
123,604	-	DZA65_RS00520	0.89	-0.8
123,608	+			+0.4
123,609	-			+1.2
123,609	-			-0.9
123,609	-			+1.0
123,630	-			+0.2
123,639	+			+0.5
123,693	+			-0.9
123,693	+			-1.9
123,693	+			+0.1
123,694	-			+0.7
123,730	-			+1.0
123,730	-			+0.1
123,768	-			-1.2
123,768	-			-0.5
123,771	+			+0.2
123,793	-	DZA65_RS00525	0.12	-0.2
123,801	+	DZA65_RS00525	0.15	+0.0
123,802	-	DZA65_RS00525	0.16	-0.3
123,811	-	DZA65_RS00525	0.20	-0.6
123,811	-	DZA65_RS00525	0.20	-0.2
123,813	+	DZA65_RS00525	0.21	-0.8
123,813	+	DZA65_RS00525	0.21	+0.8
123,814	-	DZA65_RS00525	0.21	+0.8
123,814	-	DZA65_RS00525	0.21	-1.0
123,814	-	DZA65_RS00525	0.21	-1.6
123,852	+	DZA65_RS00525	0.38	-0.4
123,853	-	DZA65_RS00525	0.38	-0.8
123,853	-	DZA65_RS00525	0.38	-0.4
123,853	-	DZA65_RS00525	0.38	-1.1
123,884	-	DZA65_RS00525	0.52	-1.4
123,884	-	DZA65_RS00525	0.52	+0.6
123,900	+	DZA65_RS00525	0.59	-0.3
123,901	-	DZA65_RS00525	0.59	+0.9
123,957	-	DZA65_RS00525	0.84	-0.6
123,957	-	DZA65_RS00525	0.84	-0.4
123,957	-	DZA65_RS00525	0.84	+2.8
123,957	-	DZA65_RS00525	0.84	+0.8
123,978	+			-0.9
123,979	-			-0.4
124,005	-			-0.8
124,043	+			-1.7

Or see this region's nucleotide sequence