Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00470

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	LB
				remove
111,452	+	DZA65_RS00460	0.64	+0.3
111,452	+	DZA65_RS00460	0.64	-0.7
111,452	+	DZA65_RS00460	0.64	-0.5
111,452	+	DZA65_RS00460	0.64	+2.3
111,540	+	DZA65_RS00460	0.73	+0.6
111,540	+	DZA65_RS00460	0.73	-0.0
111,541	-	DZA65_RS00460	0.73	+0.2
111,541	-	DZA65_RS00460	0.73	-0.7
111,545	+	DZA65_RS00460	0.74	+0.1
111,545	+	DZA65_RS00460	0.74	-0.6
111,546	-	DZA65_RS00460	0.74	-0.6
111,663	+	DZA65_RS00460	0.86	-1.9
111,664	-	DZA65_RS00460	0.86	-0.1
111,690	+	DZA65_RS00460	0.89	-0.1
111,690	+	DZA65_RS00460	0.89	-0.6
111,690	+	DZA65_RS00460	0.89	-0.2
111,690	+	DZA65_RS00460	0.89	-0.4
111,690	+	DZA65_RS00460	0.89	-0.6
111,690	+	DZA65_RS00460	0.89	+1.0
111,690	+	DZA65_RS00460	0.89	+0.2
111,690	+	DZA65_RS00460	0.89	-1.3
111,690	+	DZA65_RS00460	0.89	+1.1
111,690	+	DZA65_RS00460	0.89	-0.4
111,690	+	DZA65_RS00460	0.89	-1.8
111,690	+	DZA65_RS00460	0.89	+1.4
111,690	+	DZA65_RS00460	0.89	+1.8
111,690	+	DZA65_RS00460	0.89	-0.8
111,690	+	DZA65_RS00460	0.89	-0.6
111,690	+			+0.8
111,690	+	DZA65_RS00460	0.89	-1.1
111,691	-	DZA65_RS00460	0.89	-0.6
111,691	-	DZA65_RS00460	0.89	+0.1
111,691	-	DZA65_RS00460	0.89	-1.1
111,691	-	DZA65_RS00460	0.89	-0.8
111,691	-	DZA65_RS00460	0.89	-0.3
111,691	-	DZA65_RS00460	0.89	+1.1
111,691	-	DZA65_RS00460	0.89	-1.3
111,691	-	DZA65_RS00460	0.89	-0.7
111,691	-	DZA65_RS00460	0.89	+0.6
111,691	-	DZA65_RS00460	0.89	+2.6
111,691	-	DZA65_RS00460	0.89	-0.4
111,691	-	DZA65_RS00460	0.89	-0.1
111,691	-	DZA65_RS00460	0.89	+0.6
111,691	-	DZA65_RS00460	0.89	-2.2
111,691	-	DZA65_RS00460	0.89	-0.4
111,691	-	DZA65_RS00460	0.89	+0.4
111,691	-	DZA65_RS00460	0.89	-1.2
111,691	-	DZA65_RS00460	0.89	-0.6
111,691	-	DZA65_RS00460	0.89	+0.2
111,692	+	DZA65_RS00460	0.90	+0.0
111,692	+	DZA65_RS00460	0.90	-0.6
111,692	+	DZA65_RS00460	0.90	-0.4
111,692	+	DZA65_RS00460	0.90	-0.8
111,692	+	DZA65_RS00460	0.90	-0.4
111,693	-	DZA65_RS00460	0.90	+0.4
111,693	-	DZA65_RS00460	0.90	-1.0
111,693	-	DZA65_RS00460	0.90	+1.2
111,741	+			-0.2
111,742	-			+0.3
111,742	-			-2.3
111,742	-			+0.6
111,742	-			+0.8
111,742	-			-0.0
111,742	-			+0.8
111,742	-			+0.2
111,742	-			-1.2
111,765	+			-0.1
111,765	+			+0.2
111,765	+			-0.6
111,766	-			-0.6
111,766	-			-0.6
111,766	-			+1.2
111,783	+			-1.8
111,783	+			+0.0
111,783	+			-1.4
111,783	+			+1.2
111,783	+			+0.2
111,783	+			+0.4
111,783	+			+2.2
111,784	-			-0.2
111,784	-			-0.2
111,784	-			+0.3
111,784	-			-0.4
111,865	+			-0.9
111,865	+			-0.4
111,865	+			-0.2
111,865	+			-0.2
111,865	+			-0.1
111,865	+			-2.2
111,865	+			-0.9
111,865	+			+0.4
111,866	-			-0.2
111,866	-			-0.0
111,866	-			-0.8
111,866	-			-0.2
111,866	-			-0.9
111,866	-			+0.8
111,866	-			-1.6
111,866	-			-2.1
111,892	+			-0.4
111,893	-			+0.2
111,949	+	DZA65_RS00465	0.17	-1.0
111,949	+	DZA65_RS00465	0.17	+1.2
111,950	-	DZA65_RS00465	0.17	-1.5
112,005	+	DZA65_RS00465	0.27	-0.2
112,036	+	DZA65_RS00465	0.34	-0.9
112,036	+	DZA65_RS00465	0.34	+0.8
112,057	+	DZA65_RS00465	0.38	+0.2
112,058	-	DZA65_RS00465	0.38	+0.6
112,058	-	DZA65_RS00465	0.38	-0.8
112,058	-	DZA65_RS00465	0.38	-0.2
112,058	-	DZA65_RS00465	0.38	-0.6
112,058	-	DZA65_RS00465	0.38	+1.2
112,075	-	DZA65_RS00465	0.41	-1.0
112,075	-	DZA65_RS00465	0.41	+0.4
112,105	+	DZA65_RS00465	0.47	+0.9
112,105	+	DZA65_RS00465	0.47	-0.2
112,105	+	DZA65_RS00465	0.47	+0.4
112,106	-	DZA65_RS00465	0.47	+0.0
112,106	-	DZA65_RS00465	0.47	-0.8
112,108	+	DZA65_RS00465	0.48	-0.1
112,108	+	DZA65_RS00465	0.48	-0.2
112,108	+	DZA65_RS00465	0.48	-0.1
112,108	+	DZA65_RS00465	0.48	+0.8
112,108	+	DZA65_RS00465	0.48	-1.1
112,108	+	DZA65_RS00465	0.48	+0.6
112,108	+	DZA65_RS00465	0.48	-0.4
112,108	+	DZA65_RS00465	0.48	-0.8
112,108	+	DZA65_RS00465	0.48	-1.2
112,108	+	DZA65_RS00465	0.48	-2.2
112,109	-	DZA65_RS00465	0.48	-2.0
112,109	-	DZA65_RS00465	0.48	-1.6
112,109	-	DZA65_RS00465	0.48	+1.8
112,109	-	DZA65_RS00465	0.48	-0.6
112,109	-	DZA65_RS00465	0.48	+1.8
112,109	-	DZA65_RS00465	0.48	-3.6
112,109	-	DZA65_RS00465	0.48	-1.7
112,114	+	DZA65_RS00465	0.49	-0.8
112,114	+	DZA65_RS00465	0.49	+1.0
112,114	+	DZA65_RS00465	0.49	-0.4
112,114	+	DZA65_RS00465	0.49	-1.4
112,114	+	DZA65_RS00465	0.49	-1.4
112,114	+	DZA65_RS00465	0.49	-1.8
112,114	+	DZA65_RS00465	0.49	-1.3
112,114	+	DZA65_RS00465	0.49	-1.0
112,114	+	DZA65_RS00465	0.49	+0.2
112,114	+	DZA65_RS00465	0.49	-0.6
112,114	+	DZA65_RS00465	0.49	-2.3
112,114	+	DZA65_RS00465	0.49	+0.2
112,114	+	DZA65_RS00465	0.49	-0.4
112,114	+	DZA65_RS00465	0.49	+1.2
112,114	+	DZA65_RS00465	0.49	-0.1
112,114	+	DZA65_RS00465	0.49	+0.2
112,114	+	DZA65_RS00465	0.49	-0.0
112,115	-	DZA65_RS00465	0.49	+0.4
112,115	-	DZA65_RS00465	0.49	-0.2
112,115	-	DZA65_RS00465	0.49	-0.7
112,115	-	DZA65_RS00465	0.49	-1.8
112,115	-	DZA65_RS00465	0.49	-0.8
112,115	-	DZA65_RS00465	0.49	+0.8
112,115	-	DZA65_RS00465	0.49	+2.0
112,115	-	DZA65_RS00465	0.49	-0.4
112,115	-	DZA65_RS00465	0.49	-0.5
112,115	-	DZA65_RS00465	0.49	+0.2
112,115	-	DZA65_RS00465	0.49	-0.8
112,115	-	DZA65_RS00465	0.49	+0.6
112,115	-	DZA65_RS00465	0.49	-0.0
112,115	-			+0.2
112,115	-	DZA65_RS00465	0.49	-0.7
112,115	-	DZA65_RS00465	0.49	-1.0
112,115	-	DZA65_RS00465	0.49	-1.7
112,115	-	DZA65_RS00465	0.49	-0.8
112,116	+	DZA65_RS00465	0.49	-0.8
112,116	+	DZA65_RS00465	0.49	-2.0
112,116	+	DZA65_RS00465	0.49	-0.8
112,116	+	DZA65_RS00465	0.49	+0.5
112,116	+	DZA65_RS00465	0.49	+1.8
112,116	+	DZA65_RS00465	0.49	-1.2
112,116	+	DZA65_RS00465	0.49	-1.5
112,117	-	DZA65_RS00465	0.49	+0.2
112,117	-	DZA65_RS00465	0.49	-0.2
112,117	-	DZA65_RS00465	0.49	-0.6
112,117	-	DZA65_RS00465	0.49	+0.4
112,117	-	DZA65_RS00465	0.49	-2.5
112,117	-	DZA65_RS00465	0.49	+0.8
112,379	+			-0.6
112,379	+			-0.8
112,379	+			-0.5
112,379	+			+0.2
112,379	+			-0.2
112,379	+			-1.8
112,379	+			+0.2
112,379	+			-1.9
112,379	+			+0.8
112,379	+			+0.2
112,380	-			-0.2
112,380	-			+0.2
112,380	-			-0.2
112,380	-			-2.5
112,380	-			-0.5
112,380	-			-0.8
112,380	-			+0.8
112,380	-			-0.8
112,433	+			-0.8
112,433	+			-0.6
112,434	-			-0.2
112,434	-			-0.3
112,899	+	DZA65_RS00470	0.46	+0.2
112,988	-	DZA65_RS00470	0.54	-0.7
112,988	-	DZA65_RS00470	0.54	-1.6
112,988	-	DZA65_RS00470	0.54	-0.0
112,988	-	DZA65_RS00470	0.54	-0.6
113,024	+	DZA65_RS00470	0.57	-1.6
113,025	-	DZA65_RS00470	0.57	-0.7
113,025	-	DZA65_RS00470	0.57	-1.1
113,025	-	DZA65_RS00470	0.57	-0.7
113,025	-	DZA65_RS00470	0.57	+0.2
113,025	-	DZA65_RS00470	0.57	-0.2
113,025	-	DZA65_RS00470	0.57	+0.5
113,025	-	DZA65_RS00470	0.57	-1.6
113,025	-	DZA65_RS00470	0.57	-1.6
113,025	-	DZA65_RS00470	0.57	-1.2
113,025	-	DZA65_RS00470	0.57	-0.8
113,025	-	DZA65_RS00470	0.57	-1.3
113,211	+	DZA65_RS00470	0.73	-1.2
113,250	+	DZA65_RS00470	0.77	-1.8
113,250	+	DZA65_RS00470	0.77	+0.8
113,252	+	DZA65_RS00470	0.77	+0.8
113,252	+	DZA65_RS00470	0.77	-1.8
113,252	+	DZA65_RS00470	0.77	-0.9
113,253	-	DZA65_RS00470	0.77	-0.7
113,253	-	DZA65_RS00470	0.77	+0.1
113,253	-	DZA65_RS00470	0.77	-0.4
113,253	-	DZA65_RS00470	0.77	-0.4
113,253	-	DZA65_RS00470	0.77	+0.3
113,253	-	DZA65_RS00470	0.77	+0.2
113,253	-	DZA65_RS00470	0.77	+0.2
113,267	+	DZA65_RS00470	0.78	-0.7
113,267	+	DZA65_RS00470	0.78	+0.5
113,364	+	DZA65_RS00470	0.87	-0.9
113,364	+	DZA65_RS00470	0.87	-2.2
113,365	-	DZA65_RS00470	0.87	-1.9
113,365	-	DZA65_RS00470	0.87	-0.9
113,387	+	DZA65_RS00470	0.89	-0.6
113,388	-	DZA65_RS00470	0.89	-0.2
113,397	+	DZA65_RS00470	0.90	-1.0
113,501	+			+1.2
113,501	+			-0.6
113,541	-			-0.3
113,541	-			-0.4
113,581	+	DZA65_RS00475	0.17	-0.3
113,581	+	DZA65_RS00475	0.17	+0.8
113,582	-	DZA65_RS00475	0.17	-0.2
113,582	-	DZA65_RS00475	0.17	+2.1
113,699	+	DZA65_RS00475	0.44	+1.2
113,699	+	DZA65_RS00475	0.44	+0.2
113,699	+	DZA65_RS00475	0.44	+1.0
113,699	+	DZA65_RS00475	0.44	-1.0
113,700	-	DZA65_RS00475	0.44	-1.0
113,700	-	DZA65_RS00475	0.44	+0.5
113,700	-	DZA65_RS00475	0.44	-2.2
113,821	+	DZA65_RS00475	0.72	-0.5
113,822	-	DZA65_RS00475	0.73	-0.0
113,822	-	DZA65_RS00475	0.73	-0.0
113,822	-	DZA65_RS00475	0.73	+0.4
113,853	+	DZA65_RS00475	0.80	+0.1
113,853	+	DZA65_RS00475	0.80	+1.5
113,853	+	DZA65_RS00475	0.80	+1.2
113,853	+	DZA65_RS00475	0.80	+0.1
113,854	-	DZA65_RS00475	0.80	-1.1
113,854	-	DZA65_RS00475	0.80	-0.2
113,854	-	DZA65_RS00475	0.80	-1.5
113,854	-	DZA65_RS00475	0.80	+0.4
113,854	-	DZA65_RS00475	0.80	-0.6
113,854	-	DZA65_RS00475	0.80	+1.3
113,859	+	DZA65_RS00475	0.81	+1.0
113,859	+	DZA65_RS00475	0.81	-0.4
113,904	-			-0.3
113,904	-			-0.4
113,904	-			-0.2
113,917	+			-0.2
113,967	-			-0.8
113,997	+			-0.2
113,998	-			-0.5
114,022	+			-0.6
114,022	+			+0.8
114,023	-			-1.2
114,023	-			+0.8
114,038	+			+0.2
114,038	+			-0.2
114,038	+			+0.2
114,039	-			+0.1
114,039	-			-2.0
114,106	+			-1.2
114,106	+			-0.9
114,107	-			+0.9
114,155	+			-1.8
114,155	+			+0.2
114,155	+			+0.5
114,155	+			-0.2
114,155	+			-0.2
114,155	+			+0.4
114,155	+			-1.2
114,155	+			+2.8
114,155	+			-2.1
114,155	+			-1.0
114,155	+			+0.4
114,155	+			+0.4
114,155	+			-1.6
114,155	+			-0.6
114,155	+			+0.4
114,155	+			-1.4
114,155	+			+0.2
114,155	+			+2.8
114,156	-			-0.0
114,156	-			+0.4
114,156	-			+0.8
114,156	-			-0.0
114,156	-			-1.4
114,156	-			-0.1
114,156	-			-1.2
114,156	-			+0.2
114,156	-			-1.8
114,156	-			-0.8
114,156	-			-0.1
114,156	-			-0.8
114,156	-			-0.0
114,156	-			-1.9
114,156	-			+1.2
114,156	-			+0.3
114,156	-			+2.0
114,232	+	DZA65_RS00480	0.13	+0.5
114,232	+	DZA65_RS00480	0.13	-1.4
114,232	+	DZA65_RS00480	0.13	-0.6
114,233	-	DZA65_RS00480	0.13	-1.4
114,233	-	DZA65_RS00480	0.13	-1.0
114,233	-	DZA65_RS00480	0.13	-0.7
114,233	-	DZA65_RS00480	0.13	+0.0
114,233	-	DZA65_RS00480	0.13	-0.5
114,255	+	DZA65_RS00480	0.14	-0.2
114,255	+	DZA65_RS00480	0.14	-0.6
114,256	-	DZA65_RS00480	0.14	+0.3
114,289	+	DZA65_RS00480	0.17	-1.3
114,290	-	DZA65_RS00480	0.17	-0.1
114,342	+	DZA65_RS00480	0.20	-0.8
114,354	+	DZA65_RS00480	0.21	-0.6
114,354	+			+2.8
114,354	+	DZA65_RS00480	0.21	-0.4
114,354	+	DZA65_RS00480	0.21	+1.3
114,355	-	DZA65_RS00480	0.21	-1.2
114,355	-	DZA65_RS00480	0.21	-1.0
114,355	-	DZA65_RS00480	0.21	+0.1
114,355	-	DZA65_RS00480	0.21	+0.2
114,355	-	DZA65_RS00480	0.21	+0.6
114,407	+	DZA65_RS00480	0.24	-1.1
114,408	-	DZA65_RS00480	0.24	-0.6
114,431	+	DZA65_RS00480	0.26	-1.0
114,431	+	DZA65_RS00480	0.26	-1.6
114,431	+	DZA65_RS00480	0.26	-0.1
114,431	+	DZA65_RS00480	0.26	+0.8
114,431	+	DZA65_RS00480	0.26	-0.2
114,431	+	DZA65_RS00480	0.26	-0.4
114,432	-	DZA65_RS00480	0.26	-0.2
114,432	-	DZA65_RS00480	0.26	-1.7
114,432	-			+0.8
114,432	-	DZA65_RS00480	0.26	-0.8
114,432	-	DZA65_RS00480	0.26	+0.3
114,484	+	DZA65_RS00480	0.29	-0.8
114,484	+	DZA65_RS00480	0.29	-0.8
114,484	+	DZA65_RS00480	0.29	-0.4
114,484	+	DZA65_RS00480	0.29	+0.2
114,485	-	DZA65_RS00480	0.29	+0.2
114,485	-	DZA65_RS00480	0.29	-0.3
114,485	-	DZA65_RS00480	0.29	-0.1
114,485	-	DZA65_RS00480	0.29	-0.6
114,489	-	DZA65_RS00480	0.30	-0.6
114,489	-	DZA65_RS00480	0.30	-0.8
114,489	-	DZA65_RS00480	0.30	+1.3
114,489	-	DZA65_RS00480	0.30	+0.4

Or see this region's nucleotide sequence