Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00240 and DZA65_RS00245 are separated by 28 nucleotides DZA65_RS00245 and DZA65_RS00250 are separated by 27 nucleotides DZA65_RS00250 and DZA65_RS00255 are separated by 16 nucleotides
DZA65_RS00240: DZA65_RS00240 - urea carboxylase-associated family protein, at 58,006 to 58,725
_RS00240
DZA65_RS00245: DZA65_RS00245 - ABC transporter ATP-binding protein, at 58,754 to 59,530
_RS00245
DZA65_RS00250: DZA65_RS00250 - ABC transporter permease subunit, at 59,558 to 60,370
_RS00250
DZA65_RS00255: DZA65_RS00255 - ABC transporter substrate-binding protein, at 60,387 to 61,442
_RS00255
Position (kb) 59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 58.577 kb on + strand, within DZA65_RS00240 at 58.577 kb on + strand, within DZA65_RS00240 at 58.577 kb on + strand, within DZA65_RS00240 at 58.578 kb on - strand, within DZA65_RS00240 at 58.602 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.712 kb on + strand at 58.712 kb on + strand at 58.712 kb on + strand at 58.712 kb on + strand at 58.713 kb on - strand at 58.713 kb on - strand at 58.713 kb on - strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.833 kb on + strand, within DZA65_RS00245 at 58.833 kb on + strand, within DZA65_RS00245 at 58.833 kb on + strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.973 kb on + strand, within DZA65_RS00245 at 59.121 kb on + strand, within DZA65_RS00245 at 59.121 kb on + strand, within DZA65_RS00245 at 59.121 kb on + strand, within DZA65_RS00245 at 59.122 kb on - strand, within DZA65_RS00245 at 59.122 kb on - strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.126 kb on - strand, within DZA65_RS00245 at 59.126 kb on - strand, within DZA65_RS00245 at 59.286 kb on + strand, within DZA65_RS00245 at 59.493 kb on + strand at 59.494 kb on - strand at 59.513 kb on - strand at 59.530 kb on + strand at 59.530 kb on + strand at 59.530 kb on + strand at 59.531 kb on - strand at 59.531 kb on - strand at 59.571 kb on + strand at 59.571 kb on + strand at 59.571 kb on + strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.676 kb on + strand, within DZA65_RS00250 at 59.812 kb on + strand, within DZA65_RS00250 at 59.812 kb on + strand, within DZA65_RS00250 at 59.813 kb on - strand, within DZA65_RS00250 at 59.813 kb on - strand, within DZA65_RS00250 at 59.813 kb on - strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.954 kb on + strand, within DZA65_RS00250 at 59.954 kb on + strand, within DZA65_RS00250 at 59.955 kb on - strand, within DZA65_RS00250 at 60.105 kb on - strand, within DZA65_RS00250 at 60.285 kb on + strand, within DZA65_RS00250 at 60.286 kb on - strand, within DZA65_RS00250 at 60.286 kb on - strand, within DZA65_RS00250 at 60.305 kb on + strand at 60.351 kb on + strand at 60.351 kb on + strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.389 kb on - strand at 60.389 kb on - strand at 60.389 kb on - strand at 60.684 kb on - strand, within DZA65_RS00255 at 60.736 kb on + strand, within DZA65_RS00255 at 60.736 kb on + strand, within DZA65_RS00255 at 60.737 kb on - strand, within DZA65_RS00255 at 60.737 kb on - strand, within DZA65_RS00255 at 61.015 kb on + strand, within DZA65_RS00255 at 61.015 kb on + strand, within DZA65_RS00255 at 61.015 kb on + strand, within DZA65_RS00255 at 61.016 kb on - strand, within DZA65_RS00255 at 61.076 kb on + strand, within DZA65_RS00255 at 61.077 kb on - strand, within DZA65_RS00255 at 61.143 kb on + strand, within DZA65_RS00255 at 61.214 kb on + strand, within DZA65_RS00255 at 61.214 kb on + strand, within DZA65_RS00255 at 61.214 kb on + strand, within DZA65_RS00255 at 61.215 kb on - strand, within DZA65_RS00255 at 61.215 kb on - strand, within DZA65_RS00255 at 61.216 kb on + strand, within DZA65_RS00255 at 61.216 kb on + strand, within DZA65_RS00255 at 61.216 kb on + strand, within DZA65_RS00255 at 61.217 kb on - strand, within DZA65_RS00255 at 61.217 kb on - strand, within DZA65_RS00255 at 61.217 kb on - strand, within DZA65_RS00255 at 61.237 kb on + strand, within DZA65_RS00255 at 61.237 kb on + strand, within DZA65_RS00255 at 61.237 kb on + strand, within DZA65_RS00255 at 61.237 kb on + strand, within DZA65_RS00255 at 61.238 kb on - strand, within DZA65_RS00255 at 61.238 kb on - strand, within DZA65_RS00255 at 61.238 kb on - strand, within DZA65_RS00255 at 61.269 kb on - strand, within DZA65_RS00255 at 61.273 kb on + strand, within DZA65_RS00255 at 61.273 kb on + strand, within DZA65_RS00255 at 61.273 kb on + strand, within DZA65_RS00255 at 61.273 kb on + strand, within DZA65_RS00255 at 61.273 kb on + strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.339 kb on + strand at 61.340 kb on - strand at 61.340 kb on - strand at 61.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 58,577 + DZA65_RS00240 0.79 +0.8 58,577 + DZA65_RS00240 0.79 -0.8 58,577 + DZA65_RS00240 0.79 +1.8 58,578 - DZA65_RS00240 0.79 -0.8 58,602 + DZA65_RS00240 0.83 -1.1 58,604 + DZA65_RS00240 0.83 -0.8 58,604 + DZA65_RS00240 0.83 -0.6 58,604 + DZA65_RS00240 0.83 +0.8 58,604 + DZA65_RS00240 0.83 +2.1 58,604 + DZA65_RS00240 0.83 -0.6 58,604 + DZA65_RS00240 0.83 +1.3 58,604 + DZA65_RS00240 0.83 +0.6 58,604 + DZA65_RS00240 0.83 -1.9 58,605 - DZA65_RS00240 0.83 -0.8 58,605 - DZA65_RS00240 0.83 -0.6 58,605 - DZA65_RS00240 0.83 +0.0 58,605 - DZA65_RS00240 0.83 +0.0 58,605 - DZA65_RS00240 0.83 -1.7 58,605 - DZA65_RS00240 0.83 +1.0 58,605 - DZA65_RS00240 0.83 -1.7 58,712 + -3.2 58,712 + +1.4 58,712 + -0.8 58,712 + -0.0 58,713 - +0.2 58,713 - -0.7 58,713 - -0.2 58,737 + +0.1 58,737 + -0.2 58,737 + +0.4 58,737 + -0.0 58,737 + -0.2 58,737 + -0.9 58,737 + -0.2 58,738 - -1.0 58,738 - +0.6 58,738 - -0.6 58,738 - -1.2 58,738 - +0.0 58,738 - -0.7 58,738 - +0.2 58,738 - -1.9 58,738 - -0.9 58,738 - +0.0 58,738 - +1.2 58,738 - -0.1 58,738 - -0.2 58,833 + DZA65_RS00245 0.10 +0.2 58,833 + DZA65_RS00245 0.10 +0.3 58,833 + DZA65_RS00245 0.10 -1.8 58,834 - DZA65_RS00245 0.10 -1.2 58,834 - DZA65_RS00245 0.10 -0.8 58,834 - DZA65_RS00245 0.10 +0.3 58,834 - DZA65_RS00245 0.10 -1.1 58,834 - DZA65_RS00245 0.10 -1.4 58,973 + DZA65_RS00245 0.28 +0.4 59,121 + DZA65_RS00245 0.47 +0.7 59,121 + DZA65_RS00245 0.47 -0.1 59,121 + DZA65_RS00245 0.47 -1.4 59,122 - DZA65_RS00245 0.47 -1.2 59,122 - DZA65_RS00245 0.47 -1.4 59,125 + DZA65_RS00245 0.48 -1.0 59,125 + DZA65_RS00245 0.48 -1.7 59,125 + DZA65_RS00245 0.48 +1.3 59,125 + DZA65_RS00245 0.48 -0.9 59,126 - DZA65_RS00245 0.48 -0.8 59,126 - DZA65_RS00245 0.48 -1.8 59,286 + DZA65_RS00245 0.68 -0.0 59,493 + +0.6 59,494 - -0.4 59,513 - +1.0 59,530 + -0.6 59,530 + -0.2 59,530 + +0.2 59,531 - -0.8 59,531 - +0.3 59,571 + +0.1 59,571 + -0.0 59,571 + +0.1 59,572 - -0.6 59,572 - -0.4 59,572 - +1.0 59,572 - +0.2 59,572 - -0.2 59,649 + DZA65_RS00250 0.11 -0.7 59,649 + DZA65_RS00250 0.11 -0.1 59,649 + DZA65_RS00250 0.11 -1.7 59,649 + DZA65_RS00250 0.11 +0.2 59,649 + DZA65_RS00250 0.11 -0.1 59,649 + DZA65_RS00250 0.11 -1.1 59,649 + DZA65_RS00250 0.11 +0.2 59,650 - DZA65_RS00250 0.11 +1.8 59,650 - DZA65_RS00250 0.11 +0.8 59,650 - DZA65_RS00250 0.11 +1.3 59,650 - DZA65_RS00250 0.11 -0.6 59,676 + DZA65_RS00250 0.15 -1.6 59,812 + DZA65_RS00250 0.31 -0.4 59,812 + DZA65_RS00250 0.31 +1.3 59,813 - DZA65_RS00250 0.31 -0.6 59,813 - DZA65_RS00250 0.31 +0.8 59,813 - DZA65_RS00250 0.31 +0.1 59,892 + DZA65_RS00250 0.41 +0.2 59,892 + DZA65_RS00250 0.41 +0.4 59,892 + DZA65_RS00250 0.41 -0.0 59,892 + DZA65_RS00250 0.41 -0.7 59,892 + DZA65_RS00250 0.41 -2.2 59,892 + DZA65_RS00250 0.41 -0.1 59,892 + DZA65_RS00250 0.41 +0.8 59,893 - DZA65_RS00250 0.41 -0.4 59,893 - DZA65_RS00250 0.41 -0.4 59,893 - DZA65_RS00250 0.41 +0.8 59,893 - DZA65_RS00250 0.41 -1.1 59,893 - DZA65_RS00250 0.41 -0.6 59,893 - DZA65_RS00250 0.41 +0.1 59,893 - DZA65_RS00250 0.41 -0.0 59,893 - DZA65_RS00250 0.41 +0.4 59,893 - DZA65_RS00250 0.41 -0.5 59,893 - DZA65_RS00250 0.41 +0.8 59,893 - DZA65_RS00250 0.41 -0.8 59,893 - DZA65_RS00250 0.41 -0.6 59,893 - DZA65_RS00250 0.41 +1.3 59,893 - DZA65_RS00250 0.41 +0.5 59,893 - DZA65_RS00250 0.41 -0.8 59,893 - DZA65_RS00250 0.41 +0.2 59,954 + DZA65_RS00250 0.49 -1.1 59,954 + DZA65_RS00250 0.49 +1.1 59,955 - DZA65_RS00250 0.49 +1.8 60,105 - DZA65_RS00250 0.67 -0.2 60,285 + DZA65_RS00250 0.89 -1.6 60,286 - DZA65_RS00250 0.90 -1.7 60,286 - DZA65_RS00250 0.90 -0.6 60,305 + -1.3 60,351 + -0.2 60,351 + -0.0 60,352 - +1.8 60,352 - +0.8 60,352 - +0.8 60,388 + -0.5 60,388 + -1.2 60,388 + -0.7 60,388 + +0.1 60,388 + -0.9 60,388 + -0.6 60,388 + -0.2 60,389 - -0.5 60,389 - +0.4 60,389 - -1.0 60,684 - DZA65_RS00255 0.28 -1.0 60,736 + DZA65_RS00255 0.33 -0.6 60,736 + DZA65_RS00255 0.33 +0.2 60,737 - DZA65_RS00255 0.33 -1.0 60,737 - DZA65_RS00255 0.33 -1.6 61,015 + DZA65_RS00255 0.59 -2.1 61,015 + DZA65_RS00255 0.59 -0.7 61,015 + DZA65_RS00255 0.59 -2.5 61,016 - DZA65_RS00255 0.60 -0.6 61,076 + DZA65_RS00255 0.65 -0.4 61,077 - DZA65_RS00255 0.65 -0.2 61,143 + DZA65_RS00255 0.72 -0.6 61,214 + DZA65_RS00255 0.78 +0.5 61,214 + DZA65_RS00255 0.78 -0.0 61,214 + DZA65_RS00255 0.78 +0.4 61,215 - DZA65_RS00255 0.78 -0.6 61,215 - DZA65_RS00255 0.78 +1.2 61,216 + DZA65_RS00255 0.79 -1.0 61,216 + DZA65_RS00255 0.79 +0.4 61,216 + DZA65_RS00255 0.79 -1.0 61,217 - DZA65_RS00255 0.79 -0.6 61,217 - DZA65_RS00255 0.79 +0.4 61,217 - DZA65_RS00255 0.79 +1.0 61,237 + DZA65_RS00255 0.80 -1.2 61,237 + DZA65_RS00255 0.80 -0.9 61,237 + DZA65_RS00255 0.80 -1.3 61,237 + DZA65_RS00255 0.80 +0.9 61,238 - DZA65_RS00255 0.81 +0.9 61,238 - DZA65_RS00255 0.81 -0.6 61,238 - DZA65_RS00255 0.81 -1.8 61,269 - DZA65_RS00255 0.84 -0.4 61,273 + DZA65_RS00255 0.84 -0.2 61,273 + DZA65_RS00255 0.84 +0.1 61,273 + DZA65_RS00255 0.84 +1.8 61,273 + DZA65_RS00255 0.84 -0.7 61,273 + DZA65_RS00255 0.84 -1.9 61,274 - DZA65_RS00255 0.84 -0.0 61,274 - DZA65_RS00255 0.84 -0.5 61,274 - DZA65_RS00255 0.84 -1.6 61,274 - DZA65_RS00255 0.84 +0.5 61,274 - DZA65_RS00255 0.84 -0.9 61,274 - DZA65_RS00255 0.84 +0.1 61,339 + -0.3 61,340 - +1.8 61,340 - +1.3 61,340 - -0.0
Or see this region's nucleotide sequence