Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00230 and DZA65_RS00235 are separated by 101 nucleotides DZA65_RS00235 and DZA65_RS00240 are separated by 2 nucleotides DZA65_RS00240 and DZA65_RS00245 are separated by 28 nucleotides
DZA65_RS00230: DZA65_RS00230 - urea carboxylase, at 53,673 to 57,266
_RS00230
DZA65_RS00235: DZA65_RS00235 - urea carboxylase-associated family protein, at 57,368 to 58,003
_RS00235
DZA65_RS00240: DZA65_RS00240 - urea carboxylase-associated family protein, at 58,006 to 58,725
_RS00240
DZA65_RS00245: DZA65_RS00245 - ABC transporter ATP-binding protein, at 58,754 to 59,530
_RS00245
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 56.437 kb on + strand, within DZA65_RS00230 at 56.437 kb on + strand, within DZA65_RS00230 at 56.437 kb on + strand, within DZA65_RS00230 at 56.437 kb on + strand, within DZA65_RS00230 at 56.437 kb on + strand, within DZA65_RS00230 at 56.437 kb on + strand, within DZA65_RS00230 at 56.437 kb on + strand, within DZA65_RS00230 at 56.438 kb on - strand, within DZA65_RS00230 at 56.438 kb on - strand, within DZA65_RS00230 at 56.438 kb on - strand, within DZA65_RS00230 at 56.438 kb on - strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.443 kb on + strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.444 kb on - strand, within DZA65_RS00230 at 56.448 kb on + strand, within DZA65_RS00230 at 56.448 kb on + strand, within DZA65_RS00230 at 56.462 kb on + strand, within DZA65_RS00230 at 56.467 kb on + strand, within DZA65_RS00230 at 56.467 kb on + strand, within DZA65_RS00230 at 56.467 kb on + strand, within DZA65_RS00230 at 56.467 kb on + strand, within DZA65_RS00230 at 56.467 kb on + strand, within DZA65_RS00230 at 56.468 kb on - strand, within DZA65_RS00230 at 56.506 kb on - strand, within DZA65_RS00230 at 56.506 kb on - strand, within DZA65_RS00230 at 56.506 kb on - strand, within DZA65_RS00230 at 56.506 kb on - strand, within DZA65_RS00230 at 56.517 kb on + strand, within DZA65_RS00230 at 56.517 kb on + strand, within DZA65_RS00230 at 56.517 kb on + strand, within DZA65_RS00230 at 56.517 kb on + strand, within DZA65_RS00230 at 56.517 kb on + strand, within DZA65_RS00230 at 56.517 kb on + strand, within DZA65_RS00230 at 56.518 kb on - strand, within DZA65_RS00230 at 56.631 kb on + strand, within DZA65_RS00230 at 56.680 kb on - strand, within DZA65_RS00230 at 56.799 kb on + strand, within DZA65_RS00230 at 56.799 kb on + strand, within DZA65_RS00230 at 56.800 kb on - strand, within DZA65_RS00230 at 57.012 kb on + strand at 57.069 kb on + strand at 57.069 kb on + strand at 57.070 kb on - strand at 57.070 kb on - strand at 57.070 kb on - strand at 57.088 kb on + strand at 57.088 kb on + strand at 57.089 kb on - strand at 57.089 kb on - strand at 57.089 kb on - strand at 57.172 kb on + strand at 57.218 kb on + strand at 57.230 kb on + strand at 57.252 kb on + strand at 57.252 kb on + strand at 57.253 kb on - strand at 57.279 kb on + strand at 57.402 kb on + strand at 57.402 kb on + strand at 57.403 kb on - strand at 57.409 kb on + strand at 57.410 kb on - strand at 57.410 kb on - strand at 57.452 kb on + strand, within DZA65_RS00235 at 57.452 kb on + strand, within DZA65_RS00235 at 57.452 kb on + strand at 57.452 kb on + strand, within DZA65_RS00235 at 57.452 kb on + strand, within DZA65_RS00235 at 57.452 kb on + strand, within DZA65_RS00235 at 57.453 kb on - strand, within DZA65_RS00235 at 57.453 kb on - strand, within DZA65_RS00235 at 57.453 kb on - strand, within DZA65_RS00235 at 57.453 kb on - strand, within DZA65_RS00235 at 57.453 kb on - strand, within DZA65_RS00235 at 57.453 kb on - strand, within DZA65_RS00235 at 57.453 kb on - strand, within DZA65_RS00235 at 57.453 kb on - strand, within DZA65_RS00235 at 57.453 kb on - strand, within DZA65_RS00235 at 57.480 kb on + strand, within DZA65_RS00235 at 57.480 kb on + strand, within DZA65_RS00235 at 57.480 kb on + strand, within DZA65_RS00235 at 57.480 kb on + strand, within DZA65_RS00235 at 57.481 kb on - strand, within DZA65_RS00235 at 57.481 kb on - strand, within DZA65_RS00235 at 57.481 kb on - strand, within DZA65_RS00235 at 57.481 kb on - strand, within DZA65_RS00235 at 57.481 kb on - strand, within DZA65_RS00235 at 57.499 kb on + strand, within DZA65_RS00235 at 57.500 kb on - strand, within DZA65_RS00235 at 57.591 kb on + strand, within DZA65_RS00235 at 57.706 kb on + strand, within DZA65_RS00235 at 57.707 kb on - strand, within DZA65_RS00235 at 57.855 kb on + strand, within DZA65_RS00235 at 57.855 kb on + strand, within DZA65_RS00235 at 57.855 kb on + strand, within DZA65_RS00235 at 57.855 kb on + strand, within DZA65_RS00235 at 57.855 kb on + strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.880 kb on + strand, within DZA65_RS00235 at 57.881 kb on - strand, within DZA65_RS00235 at 57.899 kb on - strand, within DZA65_RS00235 at 57.899 kb on - strand, within DZA65_RS00235 at 57.899 kb on - strand, within DZA65_RS00235 at 57.899 kb on - strand, within DZA65_RS00235 at 57.899 kb on - strand, within DZA65_RS00235 at 58.034 kb on + strand at 58.034 kb on + strand at 58.034 kb on + strand at 58.034 kb on + strand at 58.034 kb on + strand at 58.034 kb on + strand at 58.035 kb on - strand at 58.037 kb on + strand at 58.037 kb on + strand at 58.037 kb on + strand at 58.037 kb on + strand at 58.038 kb on - strand at 58.038 kb on - strand at 58.038 kb on - strand at 58.038 kb on - strand at 58.038 kb on - strand at 58.038 kb on - strand at 58.203 kb on + strand, within DZA65_RS00240 at 58.204 kb on - strand, within DZA65_RS00240 at 58.332 kb on - strand, within DZA65_RS00240 at 58.332 kb on - strand, within DZA65_RS00240 at 58.397 kb on + strand, within DZA65_RS00240 at 58.398 kb on - strand, within DZA65_RS00240 at 58.398 kb on - strand, within DZA65_RS00240 at 58.398 kb on - strand, within DZA65_RS00240 at 58.398 kb on - strand, within DZA65_RS00240 at 58.497 kb on + strand, within DZA65_RS00240 at 58.497 kb on + strand, within DZA65_RS00240 at 58.498 kb on - strand, within DZA65_RS00240 at 58.498 kb on - strand, within DZA65_RS00240 at 58.498 kb on - strand, within DZA65_RS00240 at 58.515 kb on - strand, within DZA65_RS00240 at 58.515 kb on - strand, within DZA65_RS00240 at 58.577 kb on + strand, within DZA65_RS00240 at 58.577 kb on + strand, within DZA65_RS00240 at 58.577 kb on + strand, within DZA65_RS00240 at 58.578 kb on - strand, within DZA65_RS00240 at 58.602 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.712 kb on + strand at 58.712 kb on + strand at 58.712 kb on + strand at 58.712 kb on + strand at 58.713 kb on - strand at 58.713 kb on - strand at 58.713 kb on - strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.833 kb on + strand, within DZA65_RS00245 at 58.833 kb on + strand, within DZA65_RS00245 at 58.833 kb on + strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.973 kb on + strand, within DZA65_RS00245
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 56,437 + DZA65_RS00230 0.77 -1.0 56,437 + DZA65_RS00230 0.77 +0.8 56,437 + DZA65_RS00230 0.77 -0.2 56,437 + DZA65_RS00230 0.77 -0.0 56,437 + DZA65_RS00230 0.77 -1.7 56,437 + DZA65_RS00230 0.77 +0.8 56,437 + DZA65_RS00230 0.77 +0.4 56,438 - DZA65_RS00230 0.77 -0.1 56,438 - DZA65_RS00230 0.77 -0.1 56,438 - DZA65_RS00230 0.77 +0.8 56,438 - DZA65_RS00230 0.77 -1.0 56,443 + DZA65_RS00230 0.77 +1.1 56,443 + DZA65_RS00230 0.77 -0.2 56,443 + DZA65_RS00230 0.77 -0.6 56,443 + DZA65_RS00230 0.77 -0.9 56,443 + DZA65_RS00230 0.77 -0.9 56,443 + DZA65_RS00230 0.77 -0.2 56,443 + DZA65_RS00230 0.77 -1.6 56,443 + DZA65_RS00230 0.77 -0.1 56,443 + DZA65_RS00230 0.77 -1.3 56,443 + DZA65_RS00230 0.77 -1.0 56,443 + DZA65_RS00230 0.77 +0.2 56,443 + DZA65_RS00230 0.77 +0.2 56,444 - DZA65_RS00230 0.77 +0.1 56,444 - DZA65_RS00230 0.77 -0.8 56,444 - DZA65_RS00230 0.77 -0.6 56,444 - DZA65_RS00230 0.77 -1.1 56,444 - DZA65_RS00230 0.77 -0.0 56,444 - DZA65_RS00230 0.77 -2.0 56,444 - DZA65_RS00230 0.77 -0.2 56,444 - DZA65_RS00230 0.77 -1.6 56,444 - DZA65_RS00230 0.77 -0.7 56,444 - DZA65_RS00230 0.77 -0.6 56,444 - DZA65_RS00230 0.77 -0.4 56,444 - DZA65_RS00230 0.77 +1.3 56,444 - DZA65_RS00230 0.77 -1.9 56,444 - DZA65_RS00230 0.77 -0.2 56,444 - DZA65_RS00230 0.77 -0.8 56,444 - DZA65_RS00230 0.77 -1.0 56,444 - DZA65_RS00230 0.77 -0.5 56,444 - DZA65_RS00230 0.77 -1.8 56,448 + DZA65_RS00230 0.77 -1.4 56,448 + DZA65_RS00230 0.77 -0.2 56,462 + DZA65_RS00230 0.78 +1.4 56,467 + DZA65_RS00230 0.78 +0.3 56,467 + DZA65_RS00230 0.78 -0.7 56,467 + DZA65_RS00230 0.78 -1.0 56,467 + DZA65_RS00230 0.78 -0.8 56,467 + DZA65_RS00230 0.78 -0.2 56,468 - DZA65_RS00230 0.78 -0.5 56,506 - DZA65_RS00230 0.79 -0.2 56,506 - DZA65_RS00230 0.79 -1.0 56,506 - DZA65_RS00230 0.79 -0.2 56,506 - DZA65_RS00230 0.79 +1.0 56,517 + DZA65_RS00230 0.79 -0.6 56,517 + DZA65_RS00230 0.79 -0.4 56,517 + DZA65_RS00230 0.79 -2.1 56,517 + DZA65_RS00230 0.79 -1.0 56,517 + DZA65_RS00230 0.79 -0.0 56,517 + DZA65_RS00230 0.79 -0.9 56,518 - DZA65_RS00230 0.79 -1.9 56,631 + DZA65_RS00230 0.82 +1.8 56,680 - DZA65_RS00230 0.84 +0.4 56,799 + DZA65_RS00230 0.87 -1.1 56,799 + DZA65_RS00230 0.87 -0.6 56,800 - DZA65_RS00230 0.87 -0.2 57,012 + -1.3 57,069 + +1.4 57,069 + -0.8 57,070 - -1.0 57,070 - -1.8 57,070 - -0.6 57,088 + -0.1 57,088 + +0.8 57,089 - -0.7 57,089 - -0.2 57,089 - +3.3 57,172 + +1.0 57,218 + -1.6 57,230 + -0.5 57,252 + -1.4 57,252 + -1.7 57,253 - -1.0 57,279 + -0.8 57,402 + -2.0 57,402 + -0.2 57,403 - -0.2 57,409 + -1.2 57,410 - -0.2 57,410 - -0.8 57,452 + DZA65_RS00235 0.13 -0.6 57,452 + DZA65_RS00235 0.13 -1.0 57,452 + -0.2 57,452 + DZA65_RS00235 0.13 -1.2 57,452 + DZA65_RS00235 0.13 -0.8 57,452 + DZA65_RS00235 0.13 -1.0 57,453 - DZA65_RS00235 0.13 +0.2 57,453 - DZA65_RS00235 0.13 +0.8 57,453 - DZA65_RS00235 0.13 +0.2 57,453 - DZA65_RS00235 0.13 +0.2 57,453 - DZA65_RS00235 0.13 +0.4 57,453 - DZA65_RS00235 0.13 -0.4 57,453 - DZA65_RS00235 0.13 -0.6 57,453 - DZA65_RS00235 0.13 -1.2 57,453 - DZA65_RS00235 0.13 +0.5 57,480 + DZA65_RS00235 0.18 -0.6 57,480 + DZA65_RS00235 0.18 -1.0 57,480 + DZA65_RS00235 0.18 +1.4 57,480 + DZA65_RS00235 0.18 -2.0 57,481 - DZA65_RS00235 0.18 +0.2 57,481 - DZA65_RS00235 0.18 +0.2 57,481 - DZA65_RS00235 0.18 -1.6 57,481 - DZA65_RS00235 0.18 -0.7 57,481 - DZA65_RS00235 0.18 -0.4 57,499 + DZA65_RS00235 0.21 -0.0 57,500 - DZA65_RS00235 0.21 +0.1 57,591 + DZA65_RS00235 0.35 +0.8 57,706 + DZA65_RS00235 0.53 +0.9 57,707 - DZA65_RS00235 0.53 -0.2 57,855 + DZA65_RS00235 0.77 -0.2 57,855 + DZA65_RS00235 0.77 +1.6 57,855 + DZA65_RS00235 0.77 -1.2 57,855 + DZA65_RS00235 0.77 -0.4 57,855 + DZA65_RS00235 0.77 +0.2 57,856 - DZA65_RS00235 0.77 -1.4 57,856 - DZA65_RS00235 0.77 -0.8 57,856 - DZA65_RS00235 0.77 +0.2 57,856 - DZA65_RS00235 0.77 -0.7 57,856 - DZA65_RS00235 0.77 +0.2 57,856 - DZA65_RS00235 0.77 -1.0 57,856 - DZA65_RS00235 0.77 -2.3 57,880 + DZA65_RS00235 0.81 -1.1 57,881 - DZA65_RS00235 0.81 +0.2 57,899 - DZA65_RS00235 0.83 -1.7 57,899 - DZA65_RS00235 0.83 +0.0 57,899 - DZA65_RS00235 0.83 -1.0 57,899 - DZA65_RS00235 0.83 -2.0 57,899 - DZA65_RS00235 0.83 -1.8 58,034 + -0.6 58,034 + +0.0 58,034 + -1.0 58,034 + -0.0 58,034 + +1.0 58,034 + -0.2 58,035 - -0.7 58,037 + -1.8 58,037 + -1.4 58,037 + +0.4 58,037 + -0.1 58,038 - -2.0 58,038 - -0.2 58,038 - -1.2 58,038 - -1.4 58,038 - -1.6 58,038 - -0.2 58,203 + DZA65_RS00240 0.27 -0.6 58,204 - DZA65_RS00240 0.28 -1.5 58,332 - DZA65_RS00240 0.45 -0.0 58,332 - DZA65_RS00240 0.45 +1.1 58,397 + DZA65_RS00240 0.54 +0.8 58,398 - DZA65_RS00240 0.54 +0.3 58,398 - DZA65_RS00240 0.54 +1.2 58,398 - DZA65_RS00240 0.54 -0.9 58,398 - DZA65_RS00240 0.54 -0.6 58,497 + DZA65_RS00240 0.68 -0.8 58,497 + DZA65_RS00240 0.68 -2.2 58,498 - DZA65_RS00240 0.68 -1.0 58,498 - DZA65_RS00240 0.68 +2.3 58,498 - DZA65_RS00240 0.68 -2.2 58,515 - DZA65_RS00240 0.71 +0.5 58,515 - DZA65_RS00240 0.71 -0.8 58,577 + DZA65_RS00240 0.79 +0.8 58,577 + DZA65_RS00240 0.79 -0.8 58,577 + DZA65_RS00240 0.79 +1.8 58,578 - DZA65_RS00240 0.79 -0.8 58,602 + DZA65_RS00240 0.83 -1.1 58,604 + DZA65_RS00240 0.83 -0.8 58,604 + DZA65_RS00240 0.83 -0.6 58,604 + DZA65_RS00240 0.83 +0.8 58,604 + DZA65_RS00240 0.83 +2.1 58,604 + DZA65_RS00240 0.83 -0.6 58,604 + DZA65_RS00240 0.83 +1.3 58,604 + DZA65_RS00240 0.83 +0.6 58,604 + DZA65_RS00240 0.83 -1.9 58,605 - DZA65_RS00240 0.83 -0.8 58,605 - DZA65_RS00240 0.83 -0.6 58,605 - DZA65_RS00240 0.83 +0.0 58,605 - DZA65_RS00240 0.83 +0.0 58,605 - DZA65_RS00240 0.83 -1.7 58,605 - DZA65_RS00240 0.83 +1.0 58,605 - DZA65_RS00240 0.83 -1.7 58,712 + -3.2 58,712 + +1.4 58,712 + -0.8 58,712 + -0.0 58,713 - +0.2 58,713 - -0.7 58,713 - -0.2 58,737 + +0.1 58,737 + -0.2 58,737 + +0.4 58,737 + -0.0 58,737 + -0.2 58,737 + -0.9 58,737 + -0.2 58,738 - -1.0 58,738 - +0.6 58,738 - -0.6 58,738 - -1.2 58,738 - +0.0 58,738 - -0.7 58,738 - +0.2 58,738 - -1.9 58,738 - -0.9 58,738 - +0.0 58,738 - +1.2 58,738 - -0.1 58,738 - -0.2 58,833 + DZA65_RS00245 0.10 +0.2 58,833 + DZA65_RS00245 0.10 +0.3 58,833 + DZA65_RS00245 0.10 -1.8 58,834 - DZA65_RS00245 0.10 -1.2 58,834 - DZA65_RS00245 0.10 -0.8 58,834 - DZA65_RS00245 0.10 +0.3 58,834 - DZA65_RS00245 0.10 -1.1 58,834 - DZA65_RS00245 0.10 -1.4 58,973 + DZA65_RS00245 0.28 +0.4
Or see this region's nucleotide sequence