Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00220 and DZA65_RS00225 are separated by 586 nucleotides DZA65_RS00225 and DZA65_RS00230 are separated by 337 nucleotides
DZA65_RS00220: DZA65_RS00220 - glycine--tRNA ligase subunit beta, at 49,894 to 51,978
_RS00220
DZA65_RS00225: DZA65_RS00225 - alpha/beta hydrolase, at 52,565 to 53,335
_RS00225
DZA65_RS00230: DZA65_RS00230 - urea carboxylase, at 53,673 to 57,266
_RS00230
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 51.977 kb on - strand at 51.989 kb on - strand at 52.001 kb on + strand at 52.001 kb on + strand at 52.001 kb on + strand at 52.001 kb on + strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.005 kb on + strand at 52.005 kb on + strand at 52.006 kb on - strand at 52.006 kb on - strand at 52.006 kb on - strand at 52.010 kb on + strand at 52.010 kb on + strand at 52.011 kb on - strand at 52.021 kb on + strand at 52.021 kb on + strand at 52.022 kb on - strand at 52.022 kb on - strand at 52.026 kb on - strand at 52.036 kb on + strand at 52.036 kb on + strand at 52.037 kb on - strand at 52.037 kb on - strand at 52.037 kb on - strand at 52.037 kb on - strand at 52.037 kb on - strand at 52.052 kb on + strand at 52.052 kb on + strand at 52.053 kb on - strand at 52.056 kb on + strand at 52.056 kb on + strand at 52.057 kb on - strand at 52.097 kb on + strand at 52.097 kb on + strand at 52.114 kb on + strand at 52.114 kb on + strand at 52.115 kb on - strand at 52.115 kb on - strand at 52.120 kb on - strand at 52.217 kb on + strand at 52.234 kb on + strand at 52.393 kb on + strand at 52.394 kb on - strand at 52.394 kb on - strand at 52.497 kb on - strand at 52.539 kb on + strand at 52.595 kb on - strand at 52.644 kb on - strand, within DZA65_RS00225 at 52.679 kb on + strand, within DZA65_RS00225 at 52.679 kb on + strand, within DZA65_RS00225 at 52.680 kb on - strand, within DZA65_RS00225 at 52.706 kb on + strand, within DZA65_RS00225 at 52.707 kb on - strand, within DZA65_RS00225 at 52.707 kb on - strand, within DZA65_RS00225 at 52.759 kb on + strand, within DZA65_RS00225 at 52.759 kb on + strand, within DZA65_RS00225 at 52.760 kb on - strand, within DZA65_RS00225 at 52.760 kb on - strand, within DZA65_RS00225 at 52.766 kb on - strand, within DZA65_RS00225 at 52.776 kb on + strand, within DZA65_RS00225 at 52.776 kb on + strand, within DZA65_RS00225 at 52.777 kb on - strand, within DZA65_RS00225 at 52.777 kb on - strand, within DZA65_RS00225 at 52.777 kb on - strand, within DZA65_RS00225 at 52.777 kb on - strand, within DZA65_RS00225 at 52.778 kb on + strand, within DZA65_RS00225 at 52.779 kb on - strand, within DZA65_RS00225 at 52.779 kb on - strand, within DZA65_RS00225 at 52.806 kb on + strand, within DZA65_RS00225 at 52.806 kb on + strand, within DZA65_RS00225 at 52.806 kb on + strand, within DZA65_RS00225 at 52.818 kb on + strand, within DZA65_RS00225 at 52.833 kb on + strand, within DZA65_RS00225 at 52.833 kb on + strand, within DZA65_RS00225 at 52.867 kb on + strand, within DZA65_RS00225 at 52.867 kb on + strand, within DZA65_RS00225 at 52.873 kb on + strand, within DZA65_RS00225 at 52.874 kb on - strand, within DZA65_RS00225 at 52.882 kb on - strand, within DZA65_RS00225 at 52.926 kb on + strand, within DZA65_RS00225 at 52.949 kb on + strand, within DZA65_RS00225 at 52.949 kb on + strand, within DZA65_RS00225 at 52.949 kb on + strand, within DZA65_RS00225 at 52.950 kb on - strand, within DZA65_RS00225 at 52.954 kb on + strand, within DZA65_RS00225 at 52.954 kb on + strand, within DZA65_RS00225 at 52.954 kb on + strand, within DZA65_RS00225 at 52.955 kb on - strand, within DZA65_RS00225 at 52.957 kb on + strand, within DZA65_RS00225 at 52.957 kb on + strand, within DZA65_RS00225 at 52.957 kb on + strand, within DZA65_RS00225 at 52.958 kb on - strand, within DZA65_RS00225 at 52.958 kb on - strand, within DZA65_RS00225 at 52.958 kb on - strand, within DZA65_RS00225 at 53.000 kb on - strand, within DZA65_RS00225 at 53.110 kb on + strand, within DZA65_RS00225 at 53.223 kb on - strand, within DZA65_RS00225 at 53.224 kb on + strand, within DZA65_RS00225 at 53.224 kb on + strand, within DZA65_RS00225 at 53.224 kb on + strand, within DZA65_RS00225 at 53.225 kb on - strand, within DZA65_RS00225 at 53.225 kb on - strand, within DZA65_RS00225 at 53.225 kb on - strand, within DZA65_RS00225 at 53.226 kb on + strand, within DZA65_RS00225 at 53.226 kb on + strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.269 kb on + strand at 53.269 kb on + strand at 53.269 kb on + strand at 53.270 kb on - strand at 53.270 kb on - strand at 53.279 kb on + strand at 53.280 kb on - strand at 53.324 kb on + strand at 53.324 kb on + strand at 53.325 kb on - strand at 53.325 kb on - strand at 53.325 kb on - strand at 53.325 kb on - strand at 53.326 kb on + strand at 53.343 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.394 kb on - strand at 53.396 kb on + strand at 53.402 kb on + strand at 53.402 kb on + strand at 53.403 kb on - strand at 53.483 kb on + strand at 53.483 kb on + strand at 53.484 kb on - strand at 53.484 kb on - strand at 53.506 kb on + strand at 53.506 kb on + strand at 53.507 kb on - strand at 53.525 kb on + strand at 53.526 kb on - strand at 53.526 kb on - strand at 53.532 kb on + strand at 53.533 kb on - strand at 53.625 kb on - strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.638 kb on - strand at 53.638 kb on - strand at 53.638 kb on - strand at 53.638 kb on - strand at 53.643 kb on + strand at 53.643 kb on + strand at 53.643 kb on + strand at 53.643 kb on + strand at 53.644 kb on - strand at 53.644 kb on - strand at 53.703 kb on + strand at 53.703 kb on + strand at 53.703 kb on + strand at 53.704 kb on - strand at 53.704 kb on - strand at 53.754 kb on - strand at 53.862 kb on + strand at 53.863 kb on - strand at 53.863 kb on - strand at 54.061 kb on + strand, within DZA65_RS00230 at 54.160 kb on + strand, within DZA65_RS00230 at 54.160 kb on + strand, within DZA65_RS00230 at 54.160 kb on + strand, within DZA65_RS00230 at 54.240 kb on + strand, within DZA65_RS00230 at 54.240 kb on + strand, within DZA65_RS00230 at 54.240 kb on + strand, within DZA65_RS00230 at 54.240 kb on + strand, within DZA65_RS00230 at 54.240 kb on + strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.286 kb on + strand, within DZA65_RS00230 at 54.286 kb on + strand, within DZA65_RS00230 at 54.286 kb on + strand, within DZA65_RS00230 at 54.287 kb on - strand, within DZA65_RS00230 at 54.287 kb on - strand, within DZA65_RS00230 at 54.287 kb on - strand, within DZA65_RS00230 at 54.287 kb on - strand, within DZA65_RS00230 at 54.287 kb on - strand, within DZA65_RS00230 at 54.288 kb on + strand, within DZA65_RS00230 at 54.288 kb on + strand, within DZA65_RS00230 at 54.288 kb on + strand, within DZA65_RS00230 at 54.288 kb on + strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.298 kb on + strand, within DZA65_RS00230 at 54.298 kb on + strand, within DZA65_RS00230
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 51,977 - -0.4 51,989 - -0.9 52,001 + +0.4 52,001 + -0.7 52,001 + -1.0 52,001 + -2.2 52,002 - -0.6 52,002 - +0.2 52,002 - -1.2 52,002 - -1.6 52,002 - -0.2 52,002 - -0.8 52,002 - -0.1 52,002 - -0.8 52,002 - -0.8 52,002 - +0.0 52,002 - -0.2 52,002 - -0.9 52,002 - -1.6 52,002 - -1.0 52,005 + +0.5 52,005 + -0.0 52,006 - -0.7 52,006 - -1.0 52,006 - +0.0 52,010 + -1.7 52,010 + -0.8 52,011 - +0.8 52,021 + -0.6 52,021 + +0.3 52,022 - -0.8 52,022 - -1.5 52,026 - -1.3 52,036 + -1.0 52,036 + -1.2 52,037 - -0.9 52,037 - -0.0 52,037 - +0.2 52,037 - -0.2 52,037 - -0.2 52,052 + -0.8 52,052 + +0.7 52,053 - -0.2 52,056 + -1.3 52,056 + -0.6 52,057 - -1.8 52,097 + -1.7 52,097 + -1.1 52,114 + +0.2 52,114 + -0.5 52,115 - -0.9 52,115 - -0.0 52,120 - -0.5 52,217 + +0.6 52,234 + -0.2 52,393 + +0.2 52,394 - +1.5 52,394 - +0.2 52,497 - +0.2 52,539 + -0.4 52,595 - -1.4 52,644 - DZA65_RS00225 0.10 -0.4 52,679 + DZA65_RS00225 0.15 +0.9 52,679 + DZA65_RS00225 0.15 -0.1 52,680 - DZA65_RS00225 0.15 +0.8 52,706 + DZA65_RS00225 0.18 +1.8 52,707 - DZA65_RS00225 0.18 -0.7 52,707 - DZA65_RS00225 0.18 -0.8 52,759 + DZA65_RS00225 0.25 +0.9 52,759 + DZA65_RS00225 0.25 +2.6 52,760 - DZA65_RS00225 0.25 +0.1 52,760 - DZA65_RS00225 0.25 -0.0 52,766 - DZA65_RS00225 0.26 -1.3 52,776 + DZA65_RS00225 0.27 -0.8 52,776 + DZA65_RS00225 0.27 -2.1 52,777 - DZA65_RS00225 0.27 -0.4 52,777 - DZA65_RS00225 0.27 -3.2 52,777 - DZA65_RS00225 0.27 -1.4 52,777 - DZA65_RS00225 0.27 -1.2 52,778 + DZA65_RS00225 0.28 -1.2 52,779 - DZA65_RS00225 0.28 +0.2 52,779 - DZA65_RS00225 0.28 -0.6 52,806 + DZA65_RS00225 0.31 -1.4 52,806 + DZA65_RS00225 0.31 -0.4 52,806 + DZA65_RS00225 0.31 -0.6 52,818 + DZA65_RS00225 0.33 -0.6 52,833 + DZA65_RS00225 0.35 -0.2 52,833 + DZA65_RS00225 0.35 -0.2 52,867 + DZA65_RS00225 0.39 -2.3 52,867 + DZA65_RS00225 0.39 -0.6 52,873 + DZA65_RS00225 0.40 +0.2 52,874 - DZA65_RS00225 0.40 -0.8 52,882 - DZA65_RS00225 0.41 -0.4 52,926 + DZA65_RS00225 0.47 -0.8 52,949 + DZA65_RS00225 0.50 +0.3 52,949 + DZA65_RS00225 0.50 -1.0 52,949 + DZA65_RS00225 0.50 -0.4 52,950 - DZA65_RS00225 0.50 -0.7 52,954 + DZA65_RS00225 0.50 -0.4 52,954 + DZA65_RS00225 0.50 -0.8 52,954 + DZA65_RS00225 0.50 -0.6 52,955 - DZA65_RS00225 0.51 -0.4 52,957 + DZA65_RS00225 0.51 -0.8 52,957 + DZA65_RS00225 0.51 -0.9 52,957 + DZA65_RS00225 0.51 -1.8 52,958 - DZA65_RS00225 0.51 +1.8 52,958 - DZA65_RS00225 0.51 +0.2 52,958 - DZA65_RS00225 0.51 +0.8 53,000 - DZA65_RS00225 0.56 -1.8 53,110 + DZA65_RS00225 0.71 -1.4 53,223 - DZA65_RS00225 0.85 +0.3 53,224 + DZA65_RS00225 0.85 +0.8 53,224 + DZA65_RS00225 0.85 +0.2 53,224 + DZA65_RS00225 0.85 +0.2 53,225 - DZA65_RS00225 0.86 -0.5 53,225 - DZA65_RS00225 0.86 -0.0 53,225 - DZA65_RS00225 0.86 -0.2 53,226 + DZA65_RS00225 0.86 -0.6 53,226 + DZA65_RS00225 0.86 -0.0 53,227 - DZA65_RS00225 0.86 +0.1 53,227 - DZA65_RS00225 0.86 -1.3 53,227 - DZA65_RS00225 0.86 -0.6 53,227 - DZA65_RS00225 0.86 -1.8 53,227 - DZA65_RS00225 0.86 -0.8 53,227 - DZA65_RS00225 0.86 -1.0 53,269 + +0.0 53,269 + -0.0 53,269 + +1.2 53,270 - +0.8 53,270 - -0.9 53,279 + +0.7 53,280 - +0.5 53,324 + +0.3 53,324 + -1.6 53,325 - +0.1 53,325 - -0.4 53,325 - -0.9 53,325 - +0.4 53,326 + -1.9 53,343 - -2.5 53,383 - -0.2 53,383 - -0.7 53,394 - +0.0 53,396 + +0.3 53,402 + +0.2 53,402 + -0.5 53,403 - +0.4 53,483 + -0.8 53,483 + -0.6 53,484 - -0.3 53,484 - -1.5 53,506 + +0.8 53,506 + -0.6 53,507 - -1.0 53,525 + +0.3 53,526 - +0.2 53,526 - +0.2 53,532 + -0.6 53,533 - +0.2 53,625 - +0.2 53,637 + +1.2 53,637 + -1.3 53,637 + +1.1 53,637 + -2.1 53,637 + -0.2 53,637 + -0.9 53,637 + -1.1 53,637 + -1.2 53,637 + +1.2 53,638 - -1.4 53,638 - -0.8 53,638 - +0.2 53,638 - -0.6 53,643 + +0.8 53,643 + -0.2 53,643 + +0.3 53,643 + -1.1 53,644 - +0.8 53,644 - -0.0 53,703 + -1.0 53,703 + -1.2 53,703 + -0.2 53,704 - -0.7 53,704 - -1.0 53,754 - -1.6 53,862 + -0.2 53,863 - -1.2 53,863 - -0.8 54,061 + DZA65_RS00230 0.11 -0.6 54,160 + DZA65_RS00230 0.14 -1.4 54,160 + DZA65_RS00230 0.14 -1.7 54,160 + DZA65_RS00230 0.14 -1.0 54,240 + DZA65_RS00230 0.16 +1.2 54,240 + DZA65_RS00230 0.16 -1.6 54,240 + DZA65_RS00230 0.16 -0.9 54,240 + DZA65_RS00230 0.16 -0.4 54,240 + DZA65_RS00230 0.16 -0.7 54,241 - DZA65_RS00230 0.16 +1.6 54,241 - DZA65_RS00230 0.16 +1.4 54,241 - DZA65_RS00230 0.16 -1.1 54,241 - DZA65_RS00230 0.16 +0.4 54,241 - DZA65_RS00230 0.16 +0.3 54,241 - DZA65_RS00230 0.16 +0.1 54,286 + DZA65_RS00230 0.17 +0.9 54,286 + DZA65_RS00230 0.17 +0.8 54,286 + DZA65_RS00230 0.17 +0.3 54,287 - DZA65_RS00230 0.17 -2.1 54,287 - DZA65_RS00230 0.17 -1.0 54,287 - DZA65_RS00230 0.17 -0.2 54,287 - DZA65_RS00230 0.17 -0.2 54,287 - DZA65_RS00230 0.17 -1.2 54,288 + DZA65_RS00230 0.17 -0.2 54,288 + DZA65_RS00230 0.17 -0.2 54,288 + DZA65_RS00230 0.17 -1.0 54,288 + DZA65_RS00230 0.17 -2.8 54,289 - DZA65_RS00230 0.17 -0.4 54,289 - DZA65_RS00230 0.17 -1.0 54,289 - DZA65_RS00230 0.17 +0.3 54,289 - DZA65_RS00230 0.17 -0.2 54,289 - DZA65_RS00230 0.17 -0.4 54,289 - DZA65_RS00230 0.17 +0.3 54,289 - DZA65_RS00230 0.17 -1.4 54,289 - DZA65_RS00230 0.17 -1.2 54,298 + DZA65_RS00230 0.17 -2.3 54,298 + DZA65_RS00230 0.17 -0.8
Or see this region's nucleotide sequence