Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS23335

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS18110 and DDA3937_RS23335 are separated by 230 nucleotidesDDA3937_RS23335 and DDA3937_RS18115 are separated by 96 nucleotides DDA3937_RS18110: DDA3937_RS18110 - long-chain fatty acid--CoA ligase, at 4,133,513 to 4,135,318 _RS18110 DDA3937_RS23335: DDA3937_RS23335 - leu operon leader peptide, at 4,135,549 to 4,135,632 _RS23335 DDA3937_RS18115: DDA3937_RS18115 - 2-isopropylmalate synthase, at 4,135,729 to 4,137,303 _RS18115 Position (kb) 4135 4136Strain fitness (log2 ratio) -2 -1 0 1 2at 4134.561 kb on + strand, within DDA3937_RS18110at 4134.561 kb on + strand, within DDA3937_RS18110at 4134.561 kb on + strand, within DDA3937_RS18110at 4134.562 kb on - strand, within DDA3937_RS18110at 4134.589 kb on + strand, within DDA3937_RS18110at 4134.590 kb on - strand, within DDA3937_RS18110at 4134.590 kb on - strand, within DDA3937_RS18110at 4134.590 kb on - strand, within DDA3937_RS18110at 4134.590 kb on - strand, within DDA3937_RS18110at 4134.604 kb on + strand, within DDA3937_RS18110at 4134.604 kb on + strand, within DDA3937_RS18110at 4134.605 kb on - strand, within DDA3937_RS18110at 4134.605 kb on - strand, within DDA3937_RS18110at 4134.605 kb on - strand, within DDA3937_RS18110at 4134.644 kb on + strand, within DDA3937_RS18110at 4134.644 kb on + strand, within DDA3937_RS18110at 4134.644 kb on + strand, within DDA3937_RS18110at 4134.644 kb on + strand, within DDA3937_RS18110at 4134.644 kb on + strand, within DDA3937_RS18110at 4134.644 kb on + strand, within DDA3937_RS18110at 4134.644 kb on + strand, within DDA3937_RS18110at 4134.645 kb on - strand, within DDA3937_RS18110at 4134.645 kb on - strand, within DDA3937_RS18110at 4134.645 kb on - strandat 4134.645 kb on - strand, within DDA3937_RS18110at 4134.645 kb on - strand, within DDA3937_RS18110at 4134.645 kb on - strand, within DDA3937_RS18110at 4134.645 kb on - strand, within DDA3937_RS18110at 4134.645 kb on - strand, within DDA3937_RS18110at 4134.645 kb on - strand, within DDA3937_RS18110at 4134.645 kb on - strand, within DDA3937_RS18110at 4134.645 kb on - strand, within DDA3937_RS18110at 4134.645 kb on - strand, within DDA3937_RS18110at 4134.645 kb on - strand, within DDA3937_RS18110at 4134.752 kb on - strand, within DDA3937_RS18110at 4134.752 kb on - strand, within DDA3937_RS18110at 4134.753 kb on + strand, within DDA3937_RS18110at 4134.753 kb on + strandat 4134.753 kb on + strand, within DDA3937_RS18110at 4134.753 kb on + strand, within DDA3937_RS18110at 4134.753 kb on + strand, within DDA3937_RS18110at 4134.753 kb on + strand, within DDA3937_RS18110at 4134.753 kb on + strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strandat 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.754 kb on - strand, within DDA3937_RS18110at 4134.904 kb on + strand, within DDA3937_RS18110at 4134.905 kb on - strand, within DDA3937_RS18110at 4134.905 kb on - strand, within DDA3937_RS18110at 4134.928 kb on + strand, within DDA3937_RS18110at 4135.038 kb on + strand, within DDA3937_RS18110at 4135.039 kb on - strand, within DDA3937_RS18110at 4135.039 kb on - strand, within DDA3937_RS18110at 4135.039 kb on - strand, within DDA3937_RS18110at 4135.039 kb on - strand, within DDA3937_RS18110at 4135.071 kb on - strand, within DDA3937_RS18110at 4135.099 kb on + strand, within DDA3937_RS18110at 4135.099 kb on + strand, within DDA3937_RS18110at 4135.099 kb on + strand, within DDA3937_RS18110at 4135.099 kb on + strand, within DDA3937_RS18110at 4135.100 kb on - strand, within DDA3937_RS18110at 4135.100 kb on - strand, within DDA3937_RS18110at 4135.100 kb on - strand, within DDA3937_RS18110at 4135.293 kb on + strandat 4135.293 kb on + strandat 4135.294 kb on - strandat 4135.348 kb on - strandat 4135.374 kb on - strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.449 kb on + strandat 4135.450 kb on - strandat 4135.450 kb on - strandat 4135.460 kb on + strandat 4135.461 kb on - strandat 4135.461 kb on - strandat 4135.461 kb on - strandat 4135.461 kb on - strandat 4135.498 kb on + strandat 4135.498 kb on + strandat 4135.499 kb on - strandat 4135.504 kb on + strandat 4135.505 kb on - strandat 4135.554 kb on + strandat 4135.555 kb on - strandat 4135.577 kb on + strand, within DDA3937_RS23335at 4135.578 kb on - strand, within DDA3937_RS23335at 4135.578 kb on - strand, within DDA3937_RS23335at 4135.578 kb on - strand, within DDA3937_RS23335at 4135.580 kb on + strand, within DDA3937_RS23335at 4135.581 kb on - strand, within DDA3937_RS23335at 4135.581 kb on - strand, within DDA3937_RS23335at 4135.583 kb on + strand, within DDA3937_RS23335at 4135.583 kb on + strand, within DDA3937_RS23335at 4135.583 kb on + strand, within DDA3937_RS23335at 4135.605 kb on + strand, within DDA3937_RS23335at 4135.650 kb on + strandat 4135.653 kb on - strandat 4135.653 kb on - strandat 4135.743 kb on + strandat 4135.744 kb on - strandat 4135.747 kb on - strandat 4135.902 kb on - strand, within DDA3937_RS18115at 4135.917 kb on + strand, within DDA3937_RS18115at 4136.046 kb on + strand, within DDA3937_RS18115at 4136.098 kb on + strand, within DDA3937_RS18115at 4136.098 kb on + strand, within DDA3937_RS18115at 4136.098 kb on + strand, within DDA3937_RS18115at 4136.099 kb on - strand, within DDA3937_RS18115at 4136.099 kb on - strand, within DDA3937_RS18115at 4136.099 kb on - strand, within DDA3937_RS18115at 4136.099 kb on - strand, within DDA3937_RS18115at 4136.099 kb on - strand, within DDA3937_RS18115at 4136.122 kb on + strand, within DDA3937_RS18115at 4136.123 kb on - strand, within DDA3937_RS18115at 4136.123 kb on - strand, within DDA3937_RS18115at 4136.123 kb on - strand, within DDA3937_RS18115at 4136.248 kb on + strand, within DDA3937_RS18115at 4136.290 kb on + strand, within DDA3937_RS18115at 4136.291 kb on - strand, within DDA3937_RS18115at 4136.313 kb on + strand, within DDA3937_RS18115at 4136.323 kb on - strand, within DDA3937_RS18115at 4136.527 kb on + strand, within DDA3937_RS18115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
4,134,561 + DDA3937_RS18110 0.58 -0.4
4,134,561 + DDA3937_RS18110 0.58 -1.2
4,134,561 + DDA3937_RS18110 0.58 +0.4
4,134,562 - DDA3937_RS18110 0.58 -2.0
4,134,589 + DDA3937_RS18110 0.60 +1.8
4,134,590 - DDA3937_RS18110 0.60 +0.1
4,134,590 - DDA3937_RS18110 0.60 +1.6
4,134,590 - DDA3937_RS18110 0.60 +0.6
4,134,590 - DDA3937_RS18110 0.60 -1.4
4,134,604 + DDA3937_RS18110 0.60 +0.1
4,134,604 + DDA3937_RS18110 0.60 +0.6
4,134,605 - DDA3937_RS18110 0.60 -0.9
4,134,605 - DDA3937_RS18110 0.60 -2.2
4,134,605 - DDA3937_RS18110 0.60 +0.4
4,134,644 + DDA3937_RS18110 0.63 -0.3
4,134,644 + DDA3937_RS18110 0.63 -1.9
4,134,644 + DDA3937_RS18110 0.63 +1.1
4,134,644 + DDA3937_RS18110 0.63 +0.8
4,134,644 + DDA3937_RS18110 0.63 -0.1
4,134,644 + DDA3937_RS18110 0.63 -0.5
4,134,644 + DDA3937_RS18110 0.63 -0.6
4,134,645 - DDA3937_RS18110 0.63 +0.6
4,134,645 - DDA3937_RS18110 0.63 -0.2
4,134,645 - -0.2
4,134,645 - DDA3937_RS18110 0.63 +0.5
4,134,645 - DDA3937_RS18110 0.63 +0.1
4,134,645 - DDA3937_RS18110 0.63 -0.9
4,134,645 - DDA3937_RS18110 0.63 -1.4
4,134,645 - DDA3937_RS18110 0.63 -1.2
4,134,645 - DDA3937_RS18110 0.63 +0.7
4,134,645 - DDA3937_RS18110 0.63 +0.1
4,134,645 - DDA3937_RS18110 0.63 +1.0
4,134,645 - DDA3937_RS18110 0.63 +0.7
4,134,645 - DDA3937_RS18110 0.63 +0.8
4,134,752 - DDA3937_RS18110 0.69 +0.6
4,134,752 - DDA3937_RS18110 0.69 +0.0
4,134,753 + DDA3937_RS18110 0.69 -0.4
4,134,753 + +1.8
4,134,753 + DDA3937_RS18110 0.69 +0.4
4,134,753 + DDA3937_RS18110 0.69 -2.5
4,134,753 + DDA3937_RS18110 0.69 -0.1
4,134,753 + DDA3937_RS18110 0.69 +0.8
4,134,753 + DDA3937_RS18110 0.69 -0.5
4,134,754 - DDA3937_RS18110 0.69 +0.4
4,134,754 - DDA3937_RS18110 0.69 -0.9
4,134,754 - DDA3937_RS18110 0.69 -0.4
4,134,754 - DDA3937_RS18110 0.69 +0.6
4,134,754 - -0.2
4,134,754 - DDA3937_RS18110 0.69 -0.8
4,134,754 - DDA3937_RS18110 0.69 -0.4
4,134,754 - DDA3937_RS18110 0.69 -0.6
4,134,904 + DDA3937_RS18110 0.77 +0.3
4,134,905 - DDA3937_RS18110 0.77 +0.3
4,134,905 - DDA3937_RS18110 0.77 -2.7
4,134,928 + DDA3937_RS18110 0.78 -0.5
4,135,038 + DDA3937_RS18110 0.84 +0.3
4,135,039 - DDA3937_RS18110 0.84 -0.3
4,135,039 - DDA3937_RS18110 0.84 -1.2
4,135,039 - DDA3937_RS18110 0.84 +1.4
4,135,039 - DDA3937_RS18110 0.84 -1.3
4,135,071 - DDA3937_RS18110 0.86 +0.8
4,135,099 + DDA3937_RS18110 0.88 -2.0
4,135,099 + DDA3937_RS18110 0.88 +1.1
4,135,099 + DDA3937_RS18110 0.88 -0.6
4,135,099 + DDA3937_RS18110 0.88 -0.3
4,135,100 - DDA3937_RS18110 0.88 +0.9
4,135,100 - DDA3937_RS18110 0.88 -0.6
4,135,100 - DDA3937_RS18110 0.88 +0.3
4,135,293 + -1.3
4,135,293 + -0.5
4,135,294 - -0.8
4,135,348 - -0.4
4,135,374 - +1.8
4,135,449 + -0.1
4,135,449 + -1.1
4,135,449 + -1.9
4,135,449 + +0.1
4,135,449 + +0.5
4,135,449 + +0.2
4,135,449 + -0.2
4,135,450 - -0.0
4,135,450 - -0.9
4,135,460 + -0.5
4,135,461 - -1.5
4,135,461 - -2.7
4,135,461 - -0.5
4,135,461 - +0.8
4,135,498 + -0.9
4,135,498 + -1.1
4,135,499 - -1.5
4,135,504 + -1.7
4,135,505 - -0.8
4,135,554 + -1.0
4,135,555 - -0.4
4,135,577 + DDA3937_RS23335 0.33 +0.2
4,135,578 - DDA3937_RS23335 0.35 +0.3
4,135,578 - DDA3937_RS23335 0.35 -0.9
4,135,578 - DDA3937_RS23335 0.35 +1.0
4,135,580 + DDA3937_RS23335 0.37 +0.2
4,135,581 - DDA3937_RS23335 0.38 -1.7
4,135,581 - DDA3937_RS23335 0.38 -1.4
4,135,583 + DDA3937_RS23335 0.40 -0.2
4,135,583 + DDA3937_RS23335 0.40 -1.5
4,135,583 + DDA3937_RS23335 0.40 -1.5
4,135,605 + DDA3937_RS23335 0.67 -0.9
4,135,650 + -0.4
4,135,653 - -0.6
4,135,653 - -0.3
4,135,743 + -0.2
4,135,744 - -1.0
4,135,747 - -0.8
4,135,902 - DDA3937_RS18115 0.11 +0.3
4,135,917 + DDA3937_RS18115 0.12 -0.5
4,136,046 + DDA3937_RS18115 0.20 -1.0
4,136,098 + DDA3937_RS18115 0.23 -0.4
4,136,098 + DDA3937_RS18115 0.23 +0.4
4,136,098 + DDA3937_RS18115 0.23 -0.9
4,136,099 - DDA3937_RS18115 0.23 -0.5
4,136,099 - DDA3937_RS18115 0.23 +0.8
4,136,099 - DDA3937_RS18115 0.23 -0.0
4,136,099 - DDA3937_RS18115 0.23 +0.3
4,136,099 - DDA3937_RS18115 0.23 -0.7
4,136,122 + DDA3937_RS18115 0.25 -1.1
4,136,123 - DDA3937_RS18115 0.25 +0.1
4,136,123 - DDA3937_RS18115 0.25 +2.1
4,136,123 - DDA3937_RS18115 0.25 +0.5
4,136,248 + DDA3937_RS18115 0.33 -1.3
4,136,290 + DDA3937_RS18115 0.36 -2.3
4,136,291 - DDA3937_RS18115 0.36 -0.0
4,136,313 + DDA3937_RS18115 0.37 +0.6
4,136,323 - DDA3937_RS18115 0.38 -1.1
4,136,527 + DDA3937_RS18115 0.51 -0.4

Or see this region's nucleotide sequence