Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS22540

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,705,035	-		DDA3937_RS20695	0.59	+0.1
4,705,247	-		DDA3937_RS20695	0.88	-0.4
4,705,543	+		DDA3937_RS20700	0.36	-0.2
4,705,586	+		DDA3937_RS20700	0.45	+0.3
4,705,869	+				+0.8
4,705,869	+				-0.5
4,705,870	-				+0.6
4,705,870	-				-0.7
4,705,873	+				-0.5
4,705,873	+				+1.3
4,705,873	+				-0.2
4,705,874	-				-2.4
4,705,874	-				-0.1
4,705,898	+				-0.0
4,705,902	-				-0.4
4,705,904	+				-0.8
4,705,905	-				-0.0
4,705,938	-				-0.7
4,705,976	+				+0.3
4,705,976	+				-0.4
4,705,977	-				+1.3
4,705,977	-				+0.3
4,705,979	+				-0.1
4,706,092	+		DDA3937_RS22540	0.26	-1.3
4,706,093	-				+0.5
4,706,093	-		DDA3937_RS22540	0.26	-0.0
4,706,095	-		DDA3937_RS22540	0.26	-0.7
4,706,095	-		DDA3937_RS22540	0.26	-1.4
4,706,165	+		DDA3937_RS22540	0.43	+0.1
4,706,166	-		DDA3937_RS22540	0.43	-0.8
4,706,200	+		DDA3937_RS22540	0.52	-1.1
4,706,200	+		DDA3937_RS22540	0.52	-0.9
4,706,201	-		DDA3937_RS22540	0.52	+1.1
4,706,217	-		DDA3937_RS22540	0.56	-0.9
4,706,273	+		DDA3937_RS22540	0.69	+0.2
4,706,315	+		DDA3937_RS22540	0.79	-0.6
4,706,315	+		DDA3937_RS22540	0.79	+0.3
4,706,316	-		DDA3937_RS22540	0.79	-0.5
4,706,316	-		DDA3937_RS22540	0.79	-0.6
4,706,316	-		DDA3937_RS22540	0.79	-1.6
4,706,316	-		DDA3937_RS22540	0.79	-1.7
4,706,316	-		DDA3937_RS22540	0.79	-1.1
4,706,382	-				-1.2
4,706,382	-				+0.2
4,706,382	-				-0.8
4,706,405	-				-0.2
4,706,419	-				-0.9
4,706,430	+				-0.7
4,706,447	+				-0.5
4,706,447	+				+0.1
4,706,447	+				+0.1
4,706,447	+				-0.5
4,706,448	-				-0.6
4,706,448	-				-0.0
4,706,448	-				+0.1
4,706,448	-				+1.1
4,706,455	+				-0.9
4,706,455	+				+0.1
4,706,456	-				-0.3
4,706,456	-				+0.2
4,706,458	+				+0.5
4,706,474	+				-0.6
4,706,474	+				-0.4
4,706,475	-				-1.3
4,706,475	-				+0.3
4,706,475	-				-0.1
4,706,475	-				-3.3
4,706,486	+				+0.1
4,706,487	-				-0.1
4,706,487	-				-1.2
4,706,487	-				-0.7
4,706,487	-				-2.9
4,706,508	+				+0.1
4,706,508	+				+0.2
4,706,508	+				-0.4
4,706,508	+				-0.3
4,706,509	-				-0.3
4,706,525	-				-0.9
4,706,525	-				-0.3
4,706,601	+				+0.6
4,706,601	+				+1.5
4,706,602	-				-0.9
4,706,602	-				-0.7
4,706,602	-				+0.6
4,706,602	-				-0.4
4,706,607	-				-2.7
4,706,607	-				-0.6
4,706,656	+				-0.3
4,706,656	+				+0.1
4,706,657	-				-0.8
4,706,679	+				+0.3
4,706,679	+				-0.4
4,706,680	-				+0.1
4,706,688	+				-0.5
4,706,688	+				-0.7
4,706,689	-				+0.7
4,706,729	-				+0.1
4,706,742	+				+0.5
4,706,762	+		DDA3937_RS20710	0.13	+1.2
4,706,797	+		DDA3937_RS20710	0.29	-0.1
4,706,797	+		DDA3937_RS20710	0.29	-0.1
4,706,797	+		DDA3937_RS20710	0.29	-0.9
4,706,851	+		DDA3937_RS20710	0.54	-0.7
4,706,852	-		DDA3937_RS20710	0.54	+0.3
4,706,897	+		DDA3937_RS20710	0.75	-0.7
4,706,897	+		DDA3937_RS20710	0.75	+0.9
4,706,898	-		DDA3937_RS20710	0.75	-0.4
4,706,898	-		DDA3937_RS20710	0.75	-0.4
4,706,898	-		DDA3937_RS20710	0.75	+1.5
4,706,898	-		DDA3937_RS20710	0.75	+0.8
4,706,898	-		DDA3937_RS20710	0.75	+0.1
4,706,922	-		DDA3937_RS20710	0.86	+2.1
4,706,922	-		DDA3937_RS20710	0.86	+0.1
4,706,925	+		DDA3937_RS20710	0.88	-0.5
4,706,936	-				+1.3
4,707,010	+				-0.9
4,707,010	+				-0.4
4,707,011	-				+0.3
4,707,011	-				-0.5
4,707,035	-				-0.4
4,707,035	-				+0.3
4,707,064	+				+1.0
4,707,091	+				-2.5
4,707,091	+				+0.1
4,707,092	-				+0.8
4,707,092	-				-0.5
4,707,092	-				+1.9
4,707,092	-				-1.3
4,707,095	+				+0.4
4,707,096	-				-2.7
4,707,097	+				+0.1
4,707,192	-		DDA3937_RS20715	0.41	-0.8
4,707,203	+		DDA3937_RS20715	0.45	-0.4
4,707,203	+		DDA3937_RS20715	0.45	-0.5
4,707,203	+		DDA3937_RS20715	0.45	+0.2
4,707,204	-		DDA3937_RS20715	0.46	+0.1
4,707,338	+				+0.5
4,707,338	+				-1.4
4,707,338	+				+0.1
4,707,339	-				-2.6
4,707,351	+				+0.1
4,707,351	+				+0.4