Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21525

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS21520 and DDA3937_RS21525 are separated by 72 nucleotidesDDA3937_RS21525 and DDA3937_RS21720 are separated by 27 nucleotidesDDA3937_RS21720 and DDA3937_RS21535 are separated by 5 nucleotides DDA3937_RS21520: DDA3937_RS21520 - ATP-grasp domain-containing protein, at 4,902,076 to 4,903,284 _RS21520 DDA3937_RS21525: DDA3937_RS21525 - pyridoxal-phosphate dependent enzyme, at 4,903,357 to 4,904,349 _RS21525 DDA3937_RS21720: DDA3937_RS21720 - NAD(P)H-dependent oxidoreductase, at 4,904,377 to 4,904,916 _RS21720 DDA3937_RS21535: DDA3937_RS21535 - GTP cyclohydrolase II, at 4,904,922 to 4,905,548 _RS21535 Position (kb) 4903 4904 4905Strain fitness (log2 ratio) -2 -1 0 1 2at 4902.378 kb on + strand, within DDA3937_RS21520at 4902.379 kb on - strand, within DDA3937_RS21520at 4902.401 kb on + strand, within DDA3937_RS21520at 4902.401 kb on + strand, within DDA3937_RS21520at 4902.402 kb on - strand, within DDA3937_RS21520at 4902.476 kb on + strand, within DDA3937_RS21520at 4902.482 kb on + strand, within DDA3937_RS21520at 4902.513 kb on + strand, within DDA3937_RS21520at 4902.514 kb on - strand, within DDA3937_RS21520at 4902.525 kb on + strand, within DDA3937_RS21520at 4902.546 kb on - strand, within DDA3937_RS21520at 4902.559 kb on + strand, within DDA3937_RS21520at 4902.560 kb on - strand, within DDA3937_RS21520at 4902.579 kb on + strand, within DDA3937_RS21520at 4902.579 kb on + strand, within DDA3937_RS21520at 4902.579 kb on + strand, within DDA3937_RS21520at 4902.579 kb on + strand, within DDA3937_RS21520at 4902.579 kb on + strand, within DDA3937_RS21520at 4902.579 kb on + strand, within DDA3937_RS21520at 4902.579 kb on + strand, within DDA3937_RS21520at 4902.580 kb on - strand, within DDA3937_RS21520at 4902.580 kb on - strand, within DDA3937_RS21520at 4902.580 kb on - strand, within DDA3937_RS21520at 4902.583 kb on - strand, within DDA3937_RS21520at 4902.629 kb on + strand, within DDA3937_RS21520at 4902.629 kb on + strand, within DDA3937_RS21520at 4902.688 kb on + strand, within DDA3937_RS21520at 4902.689 kb on - strand, within DDA3937_RS21520at 4902.705 kb on - strand, within DDA3937_RS21520at 4902.719 kb on + strand, within DDA3937_RS21520at 4902.719 kb on + strand, within DDA3937_RS21520at 4902.719 kb on + strand, within DDA3937_RS21520at 4902.719 kb on + strand, within DDA3937_RS21520at 4902.719 kb on + strand, within DDA3937_RS21520at 4902.719 kb on + strand, within DDA3937_RS21520at 4902.719 kb on + strand, within DDA3937_RS21520at 4902.719 kb on + strand, within DDA3937_RS21520at 4902.719 kb on + strand, within DDA3937_RS21520at 4902.720 kb on - strand, within DDA3937_RS21520at 4902.720 kb on - strand, within DDA3937_RS21520at 4902.720 kb on - strand, within DDA3937_RS21520at 4902.720 kb on - strand, within DDA3937_RS21520at 4902.720 kb on - strand, within DDA3937_RS21520at 4902.772 kb on + strand, within DDA3937_RS21520at 4902.772 kb on + strand, within DDA3937_RS21520at 4902.772 kb on + strand, within DDA3937_RS21520at 4902.772 kb on + strand, within DDA3937_RS21520at 4902.964 kb on - strand, within DDA3937_RS21520at 4902.964 kb on - strand, within DDA3937_RS21520at 4902.964 kb on - strand, within DDA3937_RS21520at 4902.964 kb on - strand, within DDA3937_RS21520at 4903.018 kb on + strand, within DDA3937_RS21520at 4903.018 kb on + strand, within DDA3937_RS21520at 4903.019 kb on - strand, within DDA3937_RS21520at 4903.019 kb on - strand, within DDA3937_RS21520at 4903.021 kb on + strand, within DDA3937_RS21520at 4903.022 kb on - strand, within DDA3937_RS21520at 4903.192 kb on - strandat 4903.196 kb on + strandat 4903.197 kb on - strandat 4903.238 kb on + strandat 4903.239 kb on - strandat 4903.239 kb on - strandat 4903.319 kb on - strandat 4903.339 kb on + strandat 4903.339 kb on + strandat 4903.339 kb on + strandat 4903.340 kb on - strandat 4903.350 kb on + strandat 4903.391 kb on + strandat 4903.392 kb on - strandat 4903.392 kb on - strandat 4903.441 kb on + strandat 4903.457 kb on - strand, within DDA3937_RS21525at 4903.501 kb on + strand, within DDA3937_RS21525at 4903.517 kb on + strand, within DDA3937_RS21525at 4903.517 kb on + strand, within DDA3937_RS21525at 4903.518 kb on - strand, within DDA3937_RS21525at 4903.518 kb on - strand, within DDA3937_RS21525at 4903.528 kb on + strand, within DDA3937_RS21525at 4903.529 kb on - strand, within DDA3937_RS21525at 4903.608 kb on + strand, within DDA3937_RS21525at 4903.608 kb on + strand, within DDA3937_RS21525at 4903.609 kb on - strand, within DDA3937_RS21525at 4903.609 kb on - strand, within DDA3937_RS21525at 4903.677 kb on - strand, within DDA3937_RS21525at 4903.695 kb on + strand, within DDA3937_RS21525at 4903.696 kb on - strand, within DDA3937_RS21525at 4903.696 kb on - strand, within DDA3937_RS21525at 4903.696 kb on - strand, within DDA3937_RS21525at 4903.696 kb on - strand, within DDA3937_RS21525at 4903.696 kb on - strand, within DDA3937_RS21525at 4903.696 kb on - strand, within DDA3937_RS21525at 4903.696 kb on - strand, within DDA3937_RS21525at 4903.698 kb on + strand, within DDA3937_RS21525at 4903.699 kb on - strand, within DDA3937_RS21525at 4903.703 kb on + strand, within DDA3937_RS21525at 4903.704 kb on - strand, within DDA3937_RS21525at 4903.704 kb on - strand, within DDA3937_RS21525at 4903.802 kb on - strand, within DDA3937_RS21525at 4903.993 kb on + strand, within DDA3937_RS21525at 4904.025 kb on + strand, within DDA3937_RS21525at 4904.025 kb on + strand, within DDA3937_RS21525at 4904.026 kb on - strand, within DDA3937_RS21525at 4904.035 kb on + strand, within DDA3937_RS21525at 4904.036 kb on - strand, within DDA3937_RS21525at 4904.036 kb on - strandat 4904.104 kb on - strand, within DDA3937_RS21525at 4904.104 kb on - strand, within DDA3937_RS21525at 4904.115 kb on + strand, within DDA3937_RS21525at 4904.115 kb on + strand, within DDA3937_RS21525at 4904.115 kb on + strand, within DDA3937_RS21525at 4904.115 kb on + strand, within DDA3937_RS21525at 4904.115 kb on + strand, within DDA3937_RS21525at 4904.116 kb on - strand, within DDA3937_RS21525at 4904.116 kb on - strand, within DDA3937_RS21525at 4904.116 kb on - strand, within DDA3937_RS21525at 4904.116 kb on - strand, within DDA3937_RS21525at 4904.116 kb on - strand, within DDA3937_RS21525at 4904.116 kb on - strand, within DDA3937_RS21525at 4904.116 kb on - strand, within DDA3937_RS21525at 4904.174 kb on + strandat 4904.174 kb on + strand, within DDA3937_RS21525at 4904.175 kb on - strand, within DDA3937_RS21525at 4904.175 kb on - strand, within DDA3937_RS21525at 4904.176 kb on + strand, within DDA3937_RS21525at 4904.176 kb on + strand, within DDA3937_RS21525at 4904.176 kb on + strand, within DDA3937_RS21525at 4904.176 kb on + strand, within DDA3937_RS21525at 4904.177 kb on - strand, within DDA3937_RS21525at 4904.177 kb on - strand, within DDA3937_RS21525at 4904.301 kb on + strandat 4904.302 kb on - strandat 4904.302 kb on - strandat 4904.353 kb on - strandat 4904.356 kb on - strandat 4904.356 kb on - strandat 4904.367 kb on + strandat 4904.367 kb on + strandat 4904.381 kb on + strandat 4904.490 kb on + strand, within DDA3937_RS21720at 4904.508 kb on + strand, within DDA3937_RS21720at 4904.567 kb on - strand, within DDA3937_RS21720at 4904.613 kb on + strand, within DDA3937_RS21720at 4904.669 kb on + strand, within DDA3937_RS21720at 4904.690 kb on - strand, within DDA3937_RS21720at 4904.753 kb on - strandat 4904.765 kb on + strand, within DDA3937_RS21720at 4904.765 kb on + strand, within DDA3937_RS21720at 4904.765 kb on + strand, within DDA3937_RS21720at 4904.813 kb on + strand, within DDA3937_RS21720at 4904.860 kb on - strand, within DDA3937_RS21720at 4904.887 kb on + strandat 4904.888 kb on - strandat 4904.908 kb on + strandat 4905.032 kb on - strand, within DDA3937_RS21535at 4905.062 kb on + strand, within DDA3937_RS21535at 4905.063 kb on - strand, within DDA3937_RS21535at 4905.065 kb on + strand, within DDA3937_RS21535at 4905.068 kb on + strand, within DDA3937_RS21535at 4905.068 kb on + strand, within DDA3937_RS21535at 4905.093 kb on + strand, within DDA3937_RS21535at 4905.169 kb on + strand, within DDA3937_RS21535at 4905.169 kb on + strand, within DDA3937_RS21535at 4905.169 kb on + strand, within DDA3937_RS21535at 4905.170 kb on - strand, within DDA3937_RS21535at 4905.173 kb on + strand, within DDA3937_RS21535at 4905.173 kb on + strand, within DDA3937_RS21535at 4905.174 kb on - strand, within DDA3937_RS21535at 4905.251 kb on - strand, within DDA3937_RS21535at 4905.334 kb on - strand, within DDA3937_RS21535

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,902,378 + DDA3937_RS21520 0.25 +0.1
4,902,379 - DDA3937_RS21520 0.25 -0.7
4,902,401 + DDA3937_RS21520 0.27 +0.7
4,902,401 + DDA3937_RS21520 0.27 -0.2
4,902,402 - DDA3937_RS21520 0.27 -0.5
4,902,476 + DDA3937_RS21520 0.33 +1.1
4,902,482 + DDA3937_RS21520 0.34 -0.7
4,902,513 + DDA3937_RS21520 0.36 -0.2
4,902,514 - DDA3937_RS21520 0.36 -0.7
4,902,525 + DDA3937_RS21520 0.37 +1.2
4,902,546 - DDA3937_RS21520 0.39 +0.5
4,902,559 + DDA3937_RS21520 0.40 -0.6
4,902,560 - DDA3937_RS21520 0.40 -1.1
4,902,579 + DDA3937_RS21520 0.42 -1.5
4,902,579 + DDA3937_RS21520 0.42 -0.0
4,902,579 + DDA3937_RS21520 0.42 -0.1
4,902,579 + DDA3937_RS21520 0.42 +0.1
4,902,579 + DDA3937_RS21520 0.42 +0.4
4,902,579 + DDA3937_RS21520 0.42 -0.5
4,902,579 + DDA3937_RS21520 0.42 -0.5
4,902,580 - DDA3937_RS21520 0.42 -0.1
4,902,580 - DDA3937_RS21520 0.42 -0.0
4,902,580 - DDA3937_RS21520 0.42 -0.1
4,902,583 - DDA3937_RS21520 0.42 +0.1
4,902,629 + DDA3937_RS21520 0.46 -1.1
4,902,629 + DDA3937_RS21520 0.46 -0.4
4,902,688 + DDA3937_RS21520 0.51 -0.6
4,902,689 - DDA3937_RS21520 0.51 +1.5
4,902,705 - DDA3937_RS21520 0.52 -0.4
4,902,719 + DDA3937_RS21520 0.53 -0.4
4,902,719 + DDA3937_RS21520 0.53 -0.9
4,902,719 + DDA3937_RS21520 0.53 -0.2
4,902,719 + DDA3937_RS21520 0.53 -0.3
4,902,719 + DDA3937_RS21520 0.53 -0.5
4,902,719 + DDA3937_RS21520 0.53 +1.4
4,902,719 + DDA3937_RS21520 0.53 +0.4
4,902,719 + DDA3937_RS21520 0.53 -0.2
4,902,719 + DDA3937_RS21520 0.53 -0.5
4,902,720 - DDA3937_RS21520 0.53 +0.4
4,902,720 - DDA3937_RS21520 0.53 +0.4
4,902,720 - DDA3937_RS21520 0.53 -1.0
4,902,720 - DDA3937_RS21520 0.53 -1.0
4,902,720 - DDA3937_RS21520 0.53 -0.4
4,902,772 + DDA3937_RS21520 0.58 -0.7
4,902,772 + DDA3937_RS21520 0.58 -0.7
4,902,772 + DDA3937_RS21520 0.58 -0.6
4,902,772 + DDA3937_RS21520 0.58 -0.2
4,902,964 - DDA3937_RS21520 0.73 +0.2
4,902,964 - DDA3937_RS21520 0.73 -0.9
4,902,964 - DDA3937_RS21520 0.73 -1.2
4,902,964 - DDA3937_RS21520 0.73 +0.3
4,903,018 + DDA3937_RS21520 0.78 -0.5
4,903,018 + DDA3937_RS21520 0.78 +0.1
4,903,019 - DDA3937_RS21520 0.78 -1.5
4,903,019 - DDA3937_RS21520 0.78 -0.7
4,903,021 + DDA3937_RS21520 0.78 -0.3
4,903,022 - DDA3937_RS21520 0.78 -0.5
4,903,192 - +0.5
4,903,196 + -1.2
4,903,197 - +1.3
4,903,238 + +0.3
4,903,239 - -0.4
4,903,239 - -0.0
4,903,319 - -0.2
4,903,339 + -0.7
4,903,339 + +1.1
4,903,339 + -1.2
4,903,340 - +0.9
4,903,350 + -1.0
4,903,391 + -0.7
4,903,392 - -0.1
4,903,392 - +0.4
4,903,441 + -0.5
4,903,457 - DDA3937_RS21525 0.10 +1.2
4,903,501 + DDA3937_RS21525 0.15 -0.1
4,903,517 + DDA3937_RS21525 0.16 +0.3
4,903,517 + DDA3937_RS21525 0.16 +1.0
4,903,518 - DDA3937_RS21525 0.16 -0.1
4,903,518 - DDA3937_RS21525 0.16 -0.3
4,903,528 + DDA3937_RS21525 0.17 -0.4
4,903,529 - DDA3937_RS21525 0.17 +0.3
4,903,608 + DDA3937_RS21525 0.25 -0.5
4,903,608 + DDA3937_RS21525 0.25 -1.0
4,903,609 - DDA3937_RS21525 0.25 +0.3
4,903,609 - DDA3937_RS21525 0.25 -0.1
4,903,677 - DDA3937_RS21525 0.32 -0.4
4,903,695 + DDA3937_RS21525 0.34 -1.0
4,903,696 - DDA3937_RS21525 0.34 -0.5
4,903,696 - DDA3937_RS21525 0.34 -0.6
4,903,696 - DDA3937_RS21525 0.34 -2.5
4,903,696 - DDA3937_RS21525 0.34 -2.1
4,903,696 - DDA3937_RS21525 0.34 -1.4
4,903,696 - DDA3937_RS21525 0.34 -0.1
4,903,696 - DDA3937_RS21525 0.34 +2.5
4,903,698 + DDA3937_RS21525 0.34 +0.7
4,903,699 - DDA3937_RS21525 0.34 +0.0
4,903,703 + DDA3937_RS21525 0.35 -0.3
4,903,704 - DDA3937_RS21525 0.35 +0.3
4,903,704 - DDA3937_RS21525 0.35 +0.8
4,903,802 - DDA3937_RS21525 0.45 -0.2
4,903,993 + DDA3937_RS21525 0.64 -0.2
4,904,025 + DDA3937_RS21525 0.67 +0.1
4,904,025 + DDA3937_RS21525 0.67 +0.1
4,904,026 - DDA3937_RS21525 0.67 -0.8
4,904,035 + DDA3937_RS21525 0.68 +1.5
4,904,036 - DDA3937_RS21525 0.68 +0.2
4,904,036 - +0.5
4,904,104 - DDA3937_RS21525 0.75 -0.2
4,904,104 - DDA3937_RS21525 0.75 -0.4
4,904,115 + DDA3937_RS21525 0.76 +0.4
4,904,115 + DDA3937_RS21525 0.76 +0.2
4,904,115 + DDA3937_RS21525 0.76 +1.2
4,904,115 + DDA3937_RS21525 0.76 -0.6
4,904,115 + DDA3937_RS21525 0.76 +0.0
4,904,116 - DDA3937_RS21525 0.76 +0.1
4,904,116 - DDA3937_RS21525 0.76 +0.2
4,904,116 - DDA3937_RS21525 0.76 +0.3
4,904,116 - DDA3937_RS21525 0.76 +0.3
4,904,116 - DDA3937_RS21525 0.76 +0.3
4,904,116 - DDA3937_RS21525 0.76 -0.4
4,904,116 - DDA3937_RS21525 0.76 +0.2
4,904,174 + -1.5
4,904,174 + DDA3937_RS21525 0.82 +0.1
4,904,175 - DDA3937_RS21525 0.82 -0.2
4,904,175 - DDA3937_RS21525 0.82 -0.7
4,904,176 + DDA3937_RS21525 0.82 -0.0
4,904,176 + DDA3937_RS21525 0.82 +0.4
4,904,176 + DDA3937_RS21525 0.82 -0.5
4,904,176 + DDA3937_RS21525 0.82 +0.5
4,904,177 - DDA3937_RS21525 0.83 -0.3
4,904,177 - DDA3937_RS21525 0.83 -0.3
4,904,301 + +0.5
4,904,302 - -0.3
4,904,302 - +0.1
4,904,353 - -0.1
4,904,356 - +0.3
4,904,356 - +0.2
4,904,367 + -0.6
4,904,367 + -0.4
4,904,381 + +0.1
4,904,490 + DDA3937_RS21720 0.21 +0.2
4,904,508 + DDA3937_RS21720 0.24 +1.1
4,904,567 - DDA3937_RS21720 0.35 +1.9
4,904,613 + DDA3937_RS21720 0.44 -1.6
4,904,669 + DDA3937_RS21720 0.54 -1.1
4,904,690 - DDA3937_RS21720 0.58 -1.1
4,904,753 - -0.5
4,904,765 + DDA3937_RS21720 0.72 +0.1
4,904,765 + DDA3937_RS21720 0.72 +0.1
4,904,765 + DDA3937_RS21720 0.72 -1.3
4,904,813 + DDA3937_RS21720 0.81 +1.1
4,904,860 - DDA3937_RS21720 0.89 +0.3
4,904,887 + -0.8
4,904,888 - +1.0
4,904,908 + +0.1
4,905,032 - DDA3937_RS21535 0.18 -0.2
4,905,062 + DDA3937_RS21535 0.22 -0.7
4,905,063 - DDA3937_RS21535 0.22 +1.3
4,905,065 + DDA3937_RS21535 0.23 -0.4
4,905,068 + DDA3937_RS21535 0.23 -0.0
4,905,068 + DDA3937_RS21535 0.23 +0.1
4,905,093 + DDA3937_RS21535 0.27 +0.6
4,905,169 + DDA3937_RS21535 0.39 +0.3
4,905,169 + DDA3937_RS21535 0.39 -0.2
4,905,169 + DDA3937_RS21535 0.39 -0.2
4,905,170 - DDA3937_RS21535 0.40 +0.4
4,905,173 + DDA3937_RS21535 0.40 -0.4
4,905,173 + DDA3937_RS21535 0.40 +1.1
4,905,174 - DDA3937_RS21535 0.40 -0.1
4,905,251 - DDA3937_RS21535 0.52 -0.9
4,905,334 - DDA3937_RS21535 0.66 -0.9

Or see this region's nucleotide sequence