Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21050

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS21045 and DDA3937_RS21050 are separated by 338 nucleotidesDDA3937_RS21050 and DDA3937_RS21055 are separated by 95 nucleotides DDA3937_RS21045: DDA3937_RS21045 - ROK family transcriptional regulator, at 4,789,273 to 4,790,472 _RS21045 DDA3937_RS21050: DDA3937_RS21050 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 4,790,811 to 4,791,920 _RS21050 DDA3937_RS21055: DDA3937_RS21055 - glycine--tRNA ligase subunit beta, at 4,792,016 to 4,794,085 _RS21055 Position (kb) 4790 4791 4792Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4789.873 kb on + strand, within DDA3937_RS21045at 4789.950 kb on - strand, within DDA3937_RS21045at 4789.950 kb on - strand, within DDA3937_RS21045at 4790.002 kb on + strand, within DDA3937_RS21045at 4790.003 kb on - strand, within DDA3937_RS21045at 4790.026 kb on + strand, within DDA3937_RS21045at 4790.027 kb on - strand, within DDA3937_RS21045at 4790.027 kb on - strand, within DDA3937_RS21045at 4790.027 kb on - strand, within DDA3937_RS21045at 4790.027 kb on - strand, within DDA3937_RS21045at 4790.028 kb on + strand, within DDA3937_RS21045at 4790.028 kb on + strand, within DDA3937_RS21045at 4790.028 kb on + strand, within DDA3937_RS21045at 4790.028 kb on + strand, within DDA3937_RS21045at 4790.028 kb on + strand, within DDA3937_RS21045at 4790.028 kb on + strand, within DDA3937_RS21045at 4790.029 kb on - strand, within DDA3937_RS21045at 4790.029 kb on - strand, within DDA3937_RS21045at 4790.029 kb on - strand, within DDA3937_RS21045at 4790.029 kb on - strand, within DDA3937_RS21045at 4790.029 kb on - strand, within DDA3937_RS21045at 4790.029 kb on - strand, within DDA3937_RS21045at 4790.029 kb on - strand, within DDA3937_RS21045at 4790.042 kb on + strand, within DDA3937_RS21045at 4790.042 kb on + strand, within DDA3937_RS21045at 4790.042 kb on + strand, within DDA3937_RS21045at 4790.066 kb on + strand, within DDA3937_RS21045at 4790.121 kb on + strand, within DDA3937_RS21045at 4790.141 kb on + strand, within DDA3937_RS21045at 4790.141 kb on + strand, within DDA3937_RS21045at 4790.141 kb on + strand, within DDA3937_RS21045at 4790.142 kb on - strand, within DDA3937_RS21045at 4790.142 kb on - strand, within DDA3937_RS21045at 4790.211 kb on - strand, within DDA3937_RS21045at 4790.211 kb on - strand, within DDA3937_RS21045at 4790.254 kb on - strand, within DDA3937_RS21045at 4790.254 kb on - strand, within DDA3937_RS21045at 4790.268 kb on + strand, within DDA3937_RS21045at 4790.268 kb on + strand, within DDA3937_RS21045at 4790.268 kb on + strand, within DDA3937_RS21045at 4790.269 kb on - strand, within DDA3937_RS21045at 4790.269 kb on - strand, within DDA3937_RS21045at 4790.269 kb on - strand, within DDA3937_RS21045at 4790.269 kb on - strand, within DDA3937_RS21045at 4790.416 kb on + strandat 4790.476 kb on + strandat 4790.562 kb on + strandat 4790.562 kb on + strandat 4790.562 kb on + strandat 4790.562 kb on + strandat 4790.563 kb on - strandat 4790.563 kb on - strandat 4790.564 kb on + strandat 4790.565 kb on - strandat 4790.565 kb on - strandat 4790.822 kb on + strandat 4790.822 kb on + strandat 4790.823 kb on - strandat 4790.823 kb on - strandat 4790.823 kb on - strandat 4790.823 kb on - strandat 4790.823 kb on - strandat 4790.834 kb on + strandat 4791.122 kb on + strand, within DDA3937_RS21050at 4791.122 kb on + strand, within DDA3937_RS21050at 4791.122 kb on + strand, within DDA3937_RS21050at 4791.122 kb on + strand, within DDA3937_RS21050at 4791.123 kb on - strand, within DDA3937_RS21050at 4791.123 kb on - strand, within DDA3937_RS21050at 4791.123 kb on - strand, within DDA3937_RS21050at 4791.123 kb on - strand, within DDA3937_RS21050at 4791.173 kb on - strand, within DDA3937_RS21050at 4791.173 kb on - strand, within DDA3937_RS21050at 4791.178 kb on + strand, within DDA3937_RS21050at 4791.178 kb on + strand, within DDA3937_RS21050at 4791.178 kb on + strand, within DDA3937_RS21050at 4791.178 kb on + strand, within DDA3937_RS21050at 4791.178 kb on + strand, within DDA3937_RS21050at 4791.178 kb on + strand, within DDA3937_RS21050at 4791.178 kb on + strand, within DDA3937_RS21050at 4791.178 kb on + strand, within DDA3937_RS21050at 4791.178 kb on + strand, within DDA3937_RS21050at 4791.179 kb on - strand, within DDA3937_RS21050at 4791.179 kb on - strand, within DDA3937_RS21050at 4791.179 kb on - strand, within DDA3937_RS21050at 4791.187 kb on - strand, within DDA3937_RS21050at 4791.256 kb on + strand, within DDA3937_RS21050at 4791.256 kb on + strand, within DDA3937_RS21050at 4791.257 kb on - strand, within DDA3937_RS21050at 4791.257 kb on - strand, within DDA3937_RS21050at 4791.257 kb on - strand, within DDA3937_RS21050at 4791.257 kb on - strand, within DDA3937_RS21050at 4791.257 kb on - strand, within DDA3937_RS21050at 4791.365 kb on + strand, within DDA3937_RS21050at 4791.365 kb on + strand, within DDA3937_RS21050at 4791.366 kb on - strand, within DDA3937_RS21050at 4791.375 kb on + strand, within DDA3937_RS21050at 4791.375 kb on + strand, within DDA3937_RS21050at 4791.375 kb on + strand, within DDA3937_RS21050at 4791.375 kb on + strand, within DDA3937_RS21050at 4791.375 kb on + strand, within DDA3937_RS21050at 4791.375 kb on + strand, within DDA3937_RS21050at 4791.376 kb on - strand, within DDA3937_RS21050at 4791.376 kb on - strand, within DDA3937_RS21050at 4791.376 kb on - strand, within DDA3937_RS21050at 4791.394 kb on + strand, within DDA3937_RS21050at 4791.394 kb on + strand, within DDA3937_RS21050at 4791.394 kb on + strand, within DDA3937_RS21050at 4791.394 kb on + strand, within DDA3937_RS21050at 4791.395 kb on - strand, within DDA3937_RS21050at 4791.395 kb on - strand, within DDA3937_RS21050at 4791.395 kb on - strand, within DDA3937_RS21050at 4791.395 kb on - strand, within DDA3937_RS21050at 4791.556 kb on + strand, within DDA3937_RS21050at 4791.556 kb on + strand, within DDA3937_RS21050at 4791.556 kb on + strand, within DDA3937_RS21050at 4791.556 kb on + strand, within DDA3937_RS21050at 4791.556 kb on + strand, within DDA3937_RS21050at 4791.556 kb on + strand, within DDA3937_RS21050at 4791.556 kb on + strand, within DDA3937_RS21050at 4791.557 kb on - strand, within DDA3937_RS21050at 4791.557 kb on - strand, within DDA3937_RS21050at 4791.557 kb on - strand, within DDA3937_RS21050at 4791.557 kb on - strand, within DDA3937_RS21050at 4791.578 kb on + strand, within DDA3937_RS21050at 4791.581 kb on + strand, within DDA3937_RS21050at 4791.581 kb on + strand, within DDA3937_RS21050at 4791.582 kb on - strand, within DDA3937_RS21050at 4791.679 kb on + strand, within DDA3937_RS21050at 4791.679 kb on + strand, within DDA3937_RS21050at 4791.679 kb on + strand, within DDA3937_RS21050at 4791.747 kb on + strand, within DDA3937_RS21050at 4791.747 kb on + strand, within DDA3937_RS21050at 4791.747 kb on + strand, within DDA3937_RS21050at 4791.747 kb on + strand, within DDA3937_RS21050at 4791.747 kb on + strand, within DDA3937_RS21050at 4791.747 kb on + strand, within DDA3937_RS21050at 4791.748 kb on - strand, within DDA3937_RS21050at 4791.748 kb on - strand, within DDA3937_RS21050at 4791.748 kb on - strand, within DDA3937_RS21050at 4791.748 kb on - strand, within DDA3937_RS21050at 4791.748 kb on - strand, within DDA3937_RS21050at 4791.748 kb on - strand, within DDA3937_RS21050at 4791.748 kb on - strand, within DDA3937_RS21050at 4791.749 kb on + strand, within DDA3937_RS21050at 4791.749 kb on + strand, within DDA3937_RS21050at 4791.749 kb on + strand, within DDA3937_RS21050at 4791.749 kb on + strand, within DDA3937_RS21050at 4791.749 kb on + strand, within DDA3937_RS21050at 4791.749 kb on + strand, within DDA3937_RS21050at 4791.749 kb on + strand, within DDA3937_RS21050at 4791.749 kb on + strand, within DDA3937_RS21050at 4791.749 kb on + strand, within DDA3937_RS21050at 4791.749 kb on + strand, within DDA3937_RS21050at 4791.749 kb on + strand, within DDA3937_RS21050at 4791.750 kb on - strand, within DDA3937_RS21050at 4791.750 kb on - strand, within DDA3937_RS21050at 4791.750 kb on - strand, within DDA3937_RS21050at 4791.750 kb on - strand, within DDA3937_RS21050at 4791.750 kb on - strand, within DDA3937_RS21050at 4791.750 kb on - strand, within DDA3937_RS21050at 4791.750 kb on - strand, within DDA3937_RS21050at 4791.753 kb on + strand, within DDA3937_RS21050at 4791.753 kb on + strand, within DDA3937_RS21050at 4791.753 kb on + strand, within DDA3937_RS21050at 4791.753 kb on + strand, within DDA3937_RS21050at 4791.753 kb on + strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.754 kb on - strand, within DDA3937_RS21050at 4791.761 kb on + strand, within DDA3937_RS21050at 4791.761 kb on + strand, within DDA3937_RS21050at 4791.761 kb on + strand, within DDA3937_RS21050at 4791.762 kb on - strandat 4791.762 kb on - strand, within DDA3937_RS21050at 4791.791 kb on - strand, within DDA3937_RS21050at 4791.791 kb on - strand, within DDA3937_RS21050at 4791.791 kb on - strand, within DDA3937_RS21050at 4791.984 kb on + strandat 4791.984 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,789,873 + DDA3937_RS21045 0.50 -0.2
4,789,950 - DDA3937_RS21045 0.56 +0.1
4,789,950 - DDA3937_RS21045 0.56 -1.1
4,790,002 + DDA3937_RS21045 0.61 -1.7
4,790,003 - DDA3937_RS21045 0.61 -0.3
4,790,026 + DDA3937_RS21045 0.63 -0.2
4,790,027 - DDA3937_RS21045 0.63 -1.2
4,790,027 - DDA3937_RS21045 0.63 +1.8
4,790,027 - DDA3937_RS21045 0.63 -0.9
4,790,027 - DDA3937_RS21045 0.63 -0.0
4,790,028 + DDA3937_RS21045 0.63 -0.3
4,790,028 + DDA3937_RS21045 0.63 +0.4
4,790,028 + DDA3937_RS21045 0.63 +0.3
4,790,028 + DDA3937_RS21045 0.63 -1.4
4,790,028 + DDA3937_RS21045 0.63 -0.7
4,790,028 + DDA3937_RS21045 0.63 -0.0
4,790,029 - DDA3937_RS21045 0.63 -0.5
4,790,029 - DDA3937_RS21045 0.63 -1.0
4,790,029 - DDA3937_RS21045 0.63 -0.2
4,790,029 - DDA3937_RS21045 0.63 -0.8
4,790,029 - DDA3937_RS21045 0.63 -1.2
4,790,029 - DDA3937_RS21045 0.63 -0.3
4,790,029 - DDA3937_RS21045 0.63 +1.1
4,790,042 + DDA3937_RS21045 0.64 -0.4
4,790,042 + DDA3937_RS21045 0.64 -0.1
4,790,042 + DDA3937_RS21045 0.64 +1.1
4,790,066 + DDA3937_RS21045 0.66 -0.6
4,790,121 + DDA3937_RS21045 0.71 -0.1
4,790,141 + DDA3937_RS21045 0.72 +2.7
4,790,141 + DDA3937_RS21045 0.72 -0.4
4,790,141 + DDA3937_RS21045 0.72 +0.1
4,790,142 - DDA3937_RS21045 0.72 +0.1
4,790,142 - DDA3937_RS21045 0.72 -0.4
4,790,211 - DDA3937_RS21045 0.78 -0.2
4,790,211 - DDA3937_RS21045 0.78 -0.7
4,790,254 - DDA3937_RS21045 0.82 +0.9
4,790,254 - DDA3937_RS21045 0.82 -1.0
4,790,268 + DDA3937_RS21045 0.83 +0.2
4,790,268 + DDA3937_RS21045 0.83 +1.1
4,790,268 + DDA3937_RS21045 0.83 -0.0
4,790,269 - DDA3937_RS21045 0.83 +0.1
4,790,269 - DDA3937_RS21045 0.83 -0.8
4,790,269 - DDA3937_RS21045 0.83 -0.2
4,790,269 - DDA3937_RS21045 0.83 +0.2
4,790,416 + -0.0
4,790,476 + -0.9
4,790,562 + +2.1
4,790,562 + +0.3
4,790,562 + +0.7
4,790,562 + +0.1
4,790,563 - +0.3
4,790,563 - -1.6
4,790,564 + -0.0
4,790,565 - -0.5
4,790,565 - -1.5
4,790,822 + +0.4
4,790,822 + +0.0
4,790,823 - -0.4
4,790,823 - -0.7
4,790,823 - -0.1
4,790,823 - +0.2
4,790,823 - -0.1
4,790,834 + +0.5
4,791,122 + DDA3937_RS21050 0.28 +0.1
4,791,122 + DDA3937_RS21050 0.28 -0.3
4,791,122 + DDA3937_RS21050 0.28 +1.4
4,791,122 + DDA3937_RS21050 0.28 -0.9
4,791,123 - DDA3937_RS21050 0.28 +0.5
4,791,123 - DDA3937_RS21050 0.28 -0.8
4,791,123 - DDA3937_RS21050 0.28 +0.1
4,791,123 - DDA3937_RS21050 0.28 -1.6
4,791,173 - DDA3937_RS21050 0.33 -0.8
4,791,173 - DDA3937_RS21050 0.33 +0.6
4,791,178 + DDA3937_RS21050 0.33 -0.3
4,791,178 + DDA3937_RS21050 0.33 +0.1
4,791,178 + DDA3937_RS21050 0.33 -0.2
4,791,178 + DDA3937_RS21050 0.33 -0.5
4,791,178 + DDA3937_RS21050 0.33 -0.6
4,791,178 + DDA3937_RS21050 0.33 -0.5
4,791,178 + DDA3937_RS21050 0.33 -1.0
4,791,178 + DDA3937_RS21050 0.33 +1.1
4,791,178 + DDA3937_RS21050 0.33 -0.9
4,791,179 - DDA3937_RS21050 0.33 +0.4
4,791,179 - DDA3937_RS21050 0.33 +0.1
4,791,179 - DDA3937_RS21050 0.33 +0.1
4,791,187 - DDA3937_RS21050 0.34 -1.2
4,791,256 + DDA3937_RS21050 0.40 -0.5
4,791,256 + DDA3937_RS21050 0.40 +0.5
4,791,257 - DDA3937_RS21050 0.40 -0.3
4,791,257 - DDA3937_RS21050 0.40 -0.4
4,791,257 - DDA3937_RS21050 0.40 -1.3
4,791,257 - DDA3937_RS21050 0.40 -0.8
4,791,257 - DDA3937_RS21050 0.40 -0.9
4,791,365 + DDA3937_RS21050 0.50 -0.9
4,791,365 + DDA3937_RS21050 0.50 -0.2
4,791,366 - DDA3937_RS21050 0.50 -0.7
4,791,375 + DDA3937_RS21050 0.51 -0.0
4,791,375 + DDA3937_RS21050 0.51 -0.6
4,791,375 + DDA3937_RS21050 0.51 -0.1
4,791,375 + DDA3937_RS21050 0.51 +0.6
4,791,375 + DDA3937_RS21050 0.51 -0.3
4,791,375 + DDA3937_RS21050 0.51 +1.1
4,791,376 - DDA3937_RS21050 0.51 +1.7
4,791,376 - DDA3937_RS21050 0.51 -0.6
4,791,376 - DDA3937_RS21050 0.51 -0.5
4,791,394 + DDA3937_RS21050 0.53 -0.4
4,791,394 + DDA3937_RS21050 0.53 -0.4
4,791,394 + DDA3937_RS21050 0.53 -0.4
4,791,394 + DDA3937_RS21050 0.53 -2.6
4,791,395 - DDA3937_RS21050 0.53 -0.2
4,791,395 - DDA3937_RS21050 0.53 +0.8
4,791,395 - DDA3937_RS21050 0.53 -0.8
4,791,395 - DDA3937_RS21050 0.53 +0.1
4,791,556 + DDA3937_RS21050 0.67 +0.3
4,791,556 + DDA3937_RS21050 0.67 +0.7
4,791,556 + DDA3937_RS21050 0.67 +0.6
4,791,556 + DDA3937_RS21050 0.67 -0.0
4,791,556 + DDA3937_RS21050 0.67 -0.6
4,791,556 + DDA3937_RS21050 0.67 -0.9
4,791,556 + DDA3937_RS21050 0.67 -1.0
4,791,557 - DDA3937_RS21050 0.67 +0.5
4,791,557 - DDA3937_RS21050 0.67 -0.2
4,791,557 - DDA3937_RS21050 0.67 +0.1
4,791,557 - DDA3937_RS21050 0.67 +0.8
4,791,578 + DDA3937_RS21050 0.69 -0.4
4,791,581 + DDA3937_RS21050 0.69 -0.5
4,791,581 + DDA3937_RS21050 0.69 -0.4
4,791,582 - DDA3937_RS21050 0.69 -0.4
4,791,679 + DDA3937_RS21050 0.78 -0.8
4,791,679 + DDA3937_RS21050 0.78 +0.0
4,791,679 + DDA3937_RS21050 0.78 +0.3
4,791,747 + DDA3937_RS21050 0.84 +0.7
4,791,747 + DDA3937_RS21050 0.84 -1.5
4,791,747 + DDA3937_RS21050 0.84 -1.0
4,791,747 + DDA3937_RS21050 0.84 -0.9
4,791,747 + DDA3937_RS21050 0.84 -0.5
4,791,747 + DDA3937_RS21050 0.84 -0.9
4,791,748 - DDA3937_RS21050 0.84 +0.3
4,791,748 - DDA3937_RS21050 0.84 -0.1
4,791,748 - DDA3937_RS21050 0.84 -0.7
4,791,748 - DDA3937_RS21050 0.84 +0.2
4,791,748 - DDA3937_RS21050 0.84 -0.3
4,791,748 - DDA3937_RS21050 0.84 +0.1
4,791,748 - DDA3937_RS21050 0.84 +1.0
4,791,749 + DDA3937_RS21050 0.85 -0.2
4,791,749 + DDA3937_RS21050 0.85 -1.5
4,791,749 + DDA3937_RS21050 0.85 -1.1
4,791,749 + DDA3937_RS21050 0.85 +0.1
4,791,749 + DDA3937_RS21050 0.85 -1.8
4,791,749 + DDA3937_RS21050 0.85 -1.3
4,791,749 + DDA3937_RS21050 0.85 -0.5
4,791,749 + DDA3937_RS21050 0.85 -0.9
4,791,749 + DDA3937_RS21050 0.85 -0.6
4,791,749 + DDA3937_RS21050 0.85 -0.7
4,791,749 + DDA3937_RS21050 0.85 +0.1
4,791,750 - DDA3937_RS21050 0.85 -0.2
4,791,750 - DDA3937_RS21050 0.85 -0.2
4,791,750 - DDA3937_RS21050 0.85 +1.8
4,791,750 - DDA3937_RS21050 0.85 -0.7
4,791,750 - DDA3937_RS21050 0.85 -0.9
4,791,750 - DDA3937_RS21050 0.85 -0.2
4,791,750 - DDA3937_RS21050 0.85 -0.5
4,791,753 + DDA3937_RS21050 0.85 -0.3
4,791,753 + DDA3937_RS21050 0.85 -0.7
4,791,753 + DDA3937_RS21050 0.85 -0.0
4,791,753 + DDA3937_RS21050 0.85 +0.2
4,791,753 + DDA3937_RS21050 0.85 -0.8
4,791,754 - DDA3937_RS21050 0.85 +0.2
4,791,754 - DDA3937_RS21050 0.85 +0.6
4,791,754 - DDA3937_RS21050 0.85 +0.5
4,791,754 - DDA3937_RS21050 0.85 -1.0
4,791,754 - DDA3937_RS21050 0.85 -0.2
4,791,754 - DDA3937_RS21050 0.85 -0.2
4,791,754 - DDA3937_RS21050 0.85 -0.3
4,791,754 - DDA3937_RS21050 0.85 +0.8
4,791,754 - DDA3937_RS21050 0.85 +0.3
4,791,754 - DDA3937_RS21050 0.85 -0.2
4,791,754 - DDA3937_RS21050 0.85 -0.5
4,791,754 - DDA3937_RS21050 0.85 +0.4
4,791,754 - DDA3937_RS21050 0.85 +0.7
4,791,761 + DDA3937_RS21050 0.86 -0.3
4,791,761 + DDA3937_RS21050 0.86 -0.1
4,791,761 + DDA3937_RS21050 0.86 -2.8
4,791,762 - +0.1
4,791,762 - DDA3937_RS21050 0.86 -1.1
4,791,791 - DDA3937_RS21050 0.88 -0.5
4,791,791 - DDA3937_RS21050 0.88 -0.7
4,791,791 - DDA3937_RS21050 0.88 -0.8
4,791,984 + +0.1
4,791,984 + -0.3

Or see this region's nucleotide sequence