Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20465

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,659,497	-		DDA3937_RS20460	0.37	+0.2
4,660,147	+				+0.0
4,660,186	+				-0.1
4,660,187	-				-0.5
4,660,221	+				+0.6
4,660,221	+				-0.1
4,660,222	-				-0.5
4,660,233	+				-0.2
4,660,233	+				-0.2
4,660,237	+				-0.7
4,660,237	+				-0.1
4,660,238	-				+0.0
4,660,238	-				+0.0
4,660,466	+		DDA3937_RS20465	0.15	+1.0
4,660,469	-		DDA3937_RS20465	0.15	-2.1
4,660,470	+				-1.0
4,660,507	+		DDA3937_RS20465	0.19	-0.6
4,660,707	-		DDA3937_RS20465	0.35	-1.6
4,660,760	-		DDA3937_RS20465	0.40	+0.1
4,660,847	+		DDA3937_RS20465	0.47	-1.4
4,660,905	+		DDA3937_RS20465	0.52	-2.0
4,660,905	+		DDA3937_RS20465	0.52	-0.6
4,660,905	+		DDA3937_RS20465	0.52	-1.8
4,660,905	+		DDA3937_RS20465	0.52	+1.3
4,660,906	-		DDA3937_RS20465	0.52	+0.0
4,660,906	-		DDA3937_RS20465	0.52	+0.6
4,660,906	-		DDA3937_RS20465	0.52	-1.6
4,661,006	-				+1.0
4,661,017	-		DDA3937_RS20465	0.61	-1.0
4,661,017	-		DDA3937_RS20465	0.61	+0.4
4,661,017	-		DDA3937_RS20465	0.61	-0.8
4,661,061	+				+0.4
4,661,178	+				-1.0
4,661,183	-		DDA3937_RS20465	0.75	-1.3
4,661,201	-		DDA3937_RS20465	0.76	-2.4
4,661,201	-		DDA3937_RS20465	0.76	+0.0
4,661,201	-		DDA3937_RS20465	0.76	-1.8
4,661,202	+		DDA3937_RS20465	0.76	-1.0
4,661,203	-		DDA3937_RS20465	0.76	-2.0
4,661,268	+		DDA3937_RS20465	0.82	-1.3
4,661,268	+				-1.3
4,661,269	-		DDA3937_RS20465	0.82	+0.6
4,661,276	+		DDA3937_RS20465	0.83	-2.1
4,661,280	+		DDA3937_RS20465	0.83	-0.6
4,661,280	+		DDA3937_RS20465	0.83	-2.9
4,661,280	+		DDA3937_RS20465	0.83	-2.3
4,661,281	-		DDA3937_RS20465	0.83	+0.8
4,661,281	-				+0.0
4,661,327	-				-1.8
4,661,354	+		DDA3937_RS20465	0.89	-1.4
4,661,358	-		DDA3937_RS20465	0.89	+0.5
4,661,358	-		DDA3937_RS20465	0.89	+0.6
4,661,433	+				+0.7
4,661,434	-				+1.3
4,661,434	-				+0.9
4,661,452	+				-1.8
4,661,479	+				-0.3
4,661,486	+				-1.6
4,661,487	-				+0.3
4,661,487	-				-1.2
4,661,547	+				-1.6
4,661,547	+				+0.6
4,661,547	+				-1.7
4,661,548	-				-0.9
4,661,548	-				-0.9
4,661,738	+		DDA3937_RS20470	0.23	-0.3
4,661,739	-		DDA3937_RS20470	0.23	-1.4
4,661,739	-		DDA3937_RS20470	0.23	+0.0
4,661,739	-		DDA3937_RS20470	0.23	-1.4
4,661,739	-		DDA3937_RS20470	0.23	+0.3
4,661,739	-		DDA3937_RS20470	0.23	-0.6
4,661,740	+		DDA3937_RS20470	0.23	-1.1
4,661,740	+		DDA3937_RS20470	0.23	-0.3
4,661,740	+		DDA3937_RS20470	0.23	-0.7
4,661,740	+		DDA3937_RS20470	0.23	-0.6
4,661,741	-		DDA3937_RS20470	0.23	-0.8
4,661,741	-		DDA3937_RS20470	0.23	+0.2
4,661,741	-		DDA3937_RS20470	0.23	-0.5
4,661,902	-		DDA3937_RS20470	0.38	-0.1
4,661,940	-		DDA3937_RS20470	0.41	-0.8
4,662,025	+		DDA3937_RS20470	0.49	-1.6
4,662,025	+		DDA3937_RS20470	0.49	-0.5
4,662,246	+		DDA3937_RS20470	0.69	-1.6
4,662,246	+		DDA3937_RS20470	0.69	-0.8
4,662,247	-		DDA3937_RS20470	0.69	+0.4
4,662,247	-		DDA3937_RS20470	0.69	+0.1
4,662,247	-		DDA3937_RS20470	0.69	-0.4
4,662,247	-		DDA3937_RS20470	0.69	+0.3
4,662,247	-		DDA3937_RS20470	0.69	-0.7
4,662,249	-		DDA3937_RS20470	0.69	+0.1
4,662,344	-		DDA3937_RS20470	0.78	-0.5
4,662,346	+		DDA3937_RS20470	0.78	-0.5
4,662,346	+		DDA3937_RS20470	0.78	-0.5
4,662,346	+		DDA3937_RS20470	0.78	-0.5
4,662,346	+		DDA3937_RS20470	0.78	+2.6
4,662,346	+		DDA3937_RS20470	0.78	-0.2
4,662,346	+		DDA3937_RS20470	0.78	-0.2
4,662,347	-		DDA3937_RS20470	0.78	-2.4
4,662,347	-		DDA3937_RS20470	0.78	-0.6
4,662,347	-		DDA3937_RS20470	0.78	-0.8
4,662,400	+		DDA3937_RS20470	0.83	-0.9
4,662,401	-		DDA3937_RS20470	0.83	-0.4
4,662,420	-		DDA3937_RS20470	0.84	-2.7
4,662,423	+		DDA3937_RS20470	0.85	-1.6
4,662,423	+		DDA3937_RS20470	0.85	-0.4
4,662,423	+		DDA3937_RS20470	0.85	+0.0
4,662,424	-		DDA3937_RS20470	0.85	-0.6
4,662,424	-		DDA3937_RS20470	0.85	-1.3
4,662,424	-		DDA3937_RS20470	0.85	-0.7