Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20445 and DDA3937_RS20450 overlap by 4 nucleotides DDA3937_RS20450 and DDA3937_RS20455 are separated by 12 nucleotides DDA3937_RS20455 and DDA3937_RS20460 overlap by 4 nucleotides
DDA3937_RS20445: DDA3937_RS20445 - ADP-heptose--LPS heptosyltransferase RfaF, at 4,655,970 to 4,657,022
_RS20445
DDA3937_RS20450: DDA3937_RS20450 - lipopolysaccharide heptosyltransferase RfaC, at 4,657,019 to 4,657,990
_RS20450
DDA3937_RS20455: DDA3937_RS20455 - putative lipopolysaccharide heptosyltransferase III, at 4,658,003 to 4,659,088
_RS20455
DDA3937_RS20460: DDA3937_RS20460 - glycosyltransferase family 4 protein, at 4,659,085 to 4,660,203
_RS20460
Position (kb) 4658
4659
4660 Strain fitness (log2 ratio) -2
-1
0
1 at 4657.977 kb on + strand at 4657.977 kb on + strand at 4657.977 kb on + strand at 4658.192 kb on + strand, within DDA3937_RS20455 at 4658.192 kb on + strand, within DDA3937_RS20455 at 4658.323 kb on - strand, within DDA3937_RS20455 at 4658.559 kb on + strand, within DDA3937_RS20455 at 4658.949 kb on + strand, within DDA3937_RS20455 at 4658.949 kb on + strand, within DDA3937_RS20455 at 4658.949 kb on + strand, within DDA3937_RS20455 at 4658.949 kb on + strand, within DDA3937_RS20455 at 4658.949 kb on + strand at 4658.950 kb on - strand, within DDA3937_RS20455 at 4658.950 kb on - strand, within DDA3937_RS20455 at 4658.950 kb on - strand, within DDA3937_RS20455 at 4658.950 kb on - strand, within DDA3937_RS20455 at 4659.497 kb on - strand, within DDA3937_RS20460
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,657,977 + +1.0 4,657,977 + +0.6 4,657,977 + +0.3 4,658,192 + DDA3937_RS20455 0.17 -1.3 4,658,192 + DDA3937_RS20455 0.17 -0.6 4,658,323 - DDA3937_RS20455 0.29 +0.4 4,658,559 + DDA3937_RS20455 0.51 +0.3 4,658,949 + DDA3937_RS20455 0.87 -1.1 4,658,949 + DDA3937_RS20455 0.87 -2.1 4,658,949 + DDA3937_RS20455 0.87 +1.0 4,658,949 + DDA3937_RS20455 0.87 -0.2 4,658,949 + +1.0 4,658,950 - DDA3937_RS20455 0.87 +0.7 4,658,950 - DDA3937_RS20455 0.87 -1.6 4,658,950 - DDA3937_RS20455 0.87 -2.0 4,658,950 - DDA3937_RS20455 0.87 -1.3 4,659,497 - DDA3937_RS20460 0.37 +0.2
Or see this region's nucleotide sequence