Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20420

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,649,424	-		DDA3937_RS20410	0.90	+0.0
4,649,424	-		DDA3937_RS20410	0.90	+0.1
4,649,428	-				-1.6
4,649,480	-				-0.9
4,649,494	-				-1.6
4,649,537	-				+0.0
4,649,541	+				-0.4
4,649,542	-				+0.6
4,649,542	-				+0.5
4,649,542	-				-0.4
4,649,542	-				+1.2
4,649,542	-				-0.5
4,649,542	-				-1.5
4,649,573	+				-2.3
4,649,574	-				-0.4
4,649,574	-				-1.0
4,649,574	-				-0.7
4,649,574	-				-0.4
4,649,577	+				+1.0
4,649,585	-				-1.1
4,649,796	+		DDA3937_RS20415	0.52	-0.3
4,649,833	+		DDA3937_RS20415	0.60	+0.0
4,649,854	-		DDA3937_RS20415	0.65	-0.1
4,649,894	-		DDA3937_RS20415	0.75	-0.3
4,649,907	+		DDA3937_RS20415	0.78	+0.7
4,649,908	-		DDA3937_RS20415	0.78	-1.0
4,649,908	-				+1.6
4,649,992	-				+0.7
4,650,030	-				+1.0
4,650,030	-				-1.0
4,650,057	+				+0.2
4,650,058	-				-0.6
4,650,059	+				-1.3
4,650,059	+				-1.1
4,650,060	-				-0.6
4,650,060	-				-1.0
4,650,060	-				-0.3
4,650,060	-				-1.8
4,650,060	-				-0.2
4,650,060	-				-1.2
4,650,060	-				-0.3
4,650,063	+				+1.0
4,650,063	+				+0.0
4,650,063	+				-1.8
4,650,064	-				-1.0
4,650,064	-				-0.6
4,650,064	-				+0.1
4,650,079	+				-0.6
4,650,079	+				-1.7
4,650,080	-				+0.2
4,650,088	+				-0.2
4,650,110	+				+0.2
4,650,111	-				-0.4
4,650,131	-				+0.1
4,650,219	-				-0.4
4,650,253	-				-1.2
4,650,282	+				+3.6
4,650,282	+				+0.7
4,650,489	+		DDA3937_RS20420	0.20	+0.0
4,650,489	+		DDA3937_RS20420	0.20	+0.3
4,650,754	+		DDA3937_RS20420	0.41	-2.3
4,651,067	+		DDA3937_RS20420	0.66	-0.7
4,651,067	+		DDA3937_RS20420	0.66	-0.3
4,651,067	+		DDA3937_RS20420	0.66	-0.8
4,651,067	+		DDA3937_RS20420	0.66	-0.8
4,651,067	+		DDA3937_RS20420	0.66	+0.1
4,651,068	-		DDA3937_RS20420	0.66	+0.4
4,651,068	-		DDA3937_RS20420	0.66	-0.3
4,651,068	-		DDA3937_RS20420	0.66	-1.8
4,651,068	-		DDA3937_RS20420	0.66	-0.2
4,651,068	-		DDA3937_RS20420	0.66	-0.4
4,651,068	-		DDA3937_RS20420	0.66	-0.3
4,651,068	-		DDA3937_RS20420	0.66	-0.2
4,651,068	-		DDA3937_RS20420	0.66	+1.0
4,651,069	+		DDA3937_RS20420	0.66	-0.3
4,651,070	-		DDA3937_RS20420	0.66	-1.6
4,651,070	-		DDA3937_RS20420	0.66	-1.3
4,651,070	-		DDA3937_RS20420	0.66	-2.0
4,651,136	+		DDA3937_RS20420	0.71	-2.0
4,651,137	-		DDA3937_RS20420	0.71	-1.1
4,651,293	-		DDA3937_RS20420	0.83	-2.0
4,651,341	-		DDA3937_RS20420	0.87	-1.2
4,651,341	-		DDA3937_RS20420	0.87	-1.8
4,651,346	+		DDA3937_RS20420	0.88	+0.3
4,651,347	-		DDA3937_RS20420	0.88	-1.9
4,651,445	+				-1.5
4,651,446	-				-0.3
4,651,502	+				+0.4
4,651,502	+				+0.5
4,651,503	-				+0.7
4,651,855	-		DDA3937_RS20425	0.37	+0.0
4,651,865	-		DDA3937_RS20425	0.38	+1.0
4,651,960	+		DDA3937_RS20425	0.48	+0.6
4,651,961	-		DDA3937_RS20425	0.48	-0.7
4,652,109	-		DDA3937_RS20425	0.64	+0.0
4,652,109	-		DDA3937_RS20425	0.64	-0.5
4,652,269	+		DDA3937_RS20425	0.81	+0.9
4,652,269	+		DDA3937_RS20425	0.81	+0.0
4,652,269	+		DDA3937_RS20425	0.81	-0.0
4,652,270	-		DDA3937_RS20425	0.81	-1.6
4,652,270	-		DDA3937_RS20425	0.81	-0.1
4,652,354	+		DDA3937_RS20425	0.90	+0.4
4,652,355	-		DDA3937_RS20425	0.90	+0.1
4,652,355	-		DDA3937_RS20425	0.90	+0.3
4,652,389	-				-0.9
4,652,416	+				+0.8
4,652,416	+				-0.1
4,652,417	-				+0.8
4,652,449	+				-1.0
4,652,479	+				+0.0
4,652,480	-				-0.2
4,652,480	-				-0.6