Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20225 and DDA3937_RS20230 are separated by 372 nucleotides DDA3937_RS20230 and DDA3937_RS20235 are separated by 18 nucleotides DDA3937_RS20235 and DDA3937_RS20240 are separated by 41 nucleotides DDA3937_RS20240 and DDA3937_RS20245 overlap by 1 nucleotides
DDA3937_RS20225: DDA3937_RS20225 - 16S ribosomal RNA, at 4,606,902 to 4,608,443
_RS20225
DDA3937_RS20230: DDA3937_RS20230 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 4,608,816 to 4,609,355
_RS20230
DDA3937_RS20235: DDA3937_RS20235 - Trk system potassium transporter TrkH, at 4,609,374 to 4,610,825
_RS20235
DDA3937_RS20240: DDA3937_RS20240 - IMPACT family protein, at 4,610,867 to 4,611,481
_RS20240
DDA3937_RS20245: DDA3937_RS20245 - Xaa-Pro dipeptidase, at 4,611,481 to 4,612,812
_RS20245
Position (kb) 4609
4610
4611 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4608.631 kb on - strand at 4608.727 kb on + strand at 4608.729 kb on + strand at 4608.807 kb on + strand at 4608.817 kb on + strand at 4608.817 kb on + strand at 4608.817 kb on + strand at 4608.817 kb on + strand at 4608.818 kb on - strand at 4608.818 kb on - strand at 4609.355 kb on + strand at 4609.355 kb on + strand at 4609.356 kb on - strand at 4609.356 kb on - strand at 4609.356 kb on - strand at 4609.369 kb on - strand at 4609.397 kb on + strand at 4609.401 kb on + strand at 4609.401 kb on + strand at 4609.445 kb on + strand at 4609.445 kb on + strand at 4609.445 kb on + strand at 4609.445 kb on + strand at 4609.463 kb on + strand at 4609.463 kb on + strand at 4609.463 kb on + strand at 4609.463 kb on + strand at 4609.463 kb on + strand at 4609.615 kb on + strand at 4609.616 kb on - strand, within DDA3937_RS20235 at 4609.616 kb on - strand, within DDA3937_RS20235 at 4609.679 kb on + strand, within DDA3937_RS20235 at 4609.679 kb on + strand, within DDA3937_RS20235 at 4609.679 kb on + strand, within DDA3937_RS20235 at 4609.679 kb on + strand, within DDA3937_RS20235 at 4609.688 kb on - strand, within DDA3937_RS20235 at 4609.688 kb on - strand, within DDA3937_RS20235 at 4609.758 kb on + strand, within DDA3937_RS20235 at 4609.812 kb on + strand, within DDA3937_RS20235 at 4609.813 kb on - strand, within DDA3937_RS20235 at 4609.813 kb on - strand, within DDA3937_RS20235 at 4609.854 kb on - strand, within DDA3937_RS20235 at 4609.934 kb on - strand, within DDA3937_RS20235 at 4609.934 kb on - strand, within DDA3937_RS20235 at 4609.961 kb on + strand, within DDA3937_RS20235 at 4609.995 kb on - strand, within DDA3937_RS20235 at 4610.023 kb on + strand, within DDA3937_RS20235 at 4610.094 kb on + strand, within DDA3937_RS20235 at 4610.115 kb on - strand, within DDA3937_RS20235 at 4610.115 kb on - strand, within DDA3937_RS20235 at 4610.115 kb on - strand, within DDA3937_RS20235 at 4610.115 kb on - strand, within DDA3937_RS20235 at 4610.115 kb on - strand, within DDA3937_RS20235 at 4610.117 kb on + strand, within DDA3937_RS20235 at 4610.117 kb on + strand, within DDA3937_RS20235 at 4610.117 kb on + strand, within DDA3937_RS20235 at 4610.118 kb on - strand, within DDA3937_RS20235 at 4610.118 kb on - strand, within DDA3937_RS20235 at 4610.187 kb on - strand, within DDA3937_RS20235 at 4610.260 kb on + strand, within DDA3937_RS20235 at 4610.261 kb on - strand, within DDA3937_RS20235 at 4610.261 kb on - strand, within DDA3937_RS20235 at 4610.309 kb on + strand, within DDA3937_RS20235 at 4610.437 kb on + strand, within DDA3937_RS20235 at 4610.735 kb on - strand at 4610.809 kb on - strand at 4610.840 kb on + strand at 4610.840 kb on + strand at 4610.840 kb on + strand at 4610.841 kb on - strand at 4610.841 kb on - strand at 4610.868 kb on + strand at 4610.908 kb on + strand at 4610.982 kb on + strand, within DDA3937_RS20240 at 4610.983 kb on - strand, within DDA3937_RS20240 at 4611.048 kb on + strand, within DDA3937_RS20240 at 4611.048 kb on + strand, within DDA3937_RS20240 at 4611.048 kb on + strand, within DDA3937_RS20240 at 4611.048 kb on + strand, within DDA3937_RS20240 at 4611.049 kb on - strand, within DDA3937_RS20240 at 4611.049 kb on - strand, within DDA3937_RS20240 at 4611.049 kb on - strand, within DDA3937_RS20240 at 4611.049 kb on - strand, within DDA3937_RS20240 at 4611.049 kb on - strand, within DDA3937_RS20240 at 4611.066 kb on + strand, within DDA3937_RS20240 at 4611.132 kb on + strand, within DDA3937_RS20240 at 4611.132 kb on + strand, within DDA3937_RS20240 at 4611.132 kb on + strand, within DDA3937_RS20240 at 4611.174 kb on + strand, within DDA3937_RS20240 at 4611.177 kb on + strand, within DDA3937_RS20240 at 4611.177 kb on + strand, within DDA3937_RS20240 at 4611.177 kb on + strand, within DDA3937_RS20240 at 4611.178 kb on - strand, within DDA3937_RS20240 at 4611.315 kb on + strand, within DDA3937_RS20240 at 4611.315 kb on + strand, within DDA3937_RS20240 at 4611.315 kb on + strand, within DDA3937_RS20240 at 4611.315 kb on + strand, within DDA3937_RS20240 at 4611.315 kb on + strand, within DDA3937_RS20240 at 4611.315 kb on + strand, within DDA3937_RS20240 at 4611.316 kb on - strand, within DDA3937_RS20240 at 4611.316 kb on - strand, within DDA3937_RS20240 at 4611.416 kb on - strand, within DDA3937_RS20240 at 4611.538 kb on - strand at 4611.550 kb on - strand at 4611.551 kb on - strand at 4611.650 kb on + strand, within DDA3937_RS20245 at 4611.650 kb on + strand, within DDA3937_RS20245 at 4611.650 kb on + strand, within DDA3937_RS20245 at 4611.650 kb on + strand, within DDA3937_RS20245 at 4611.650 kb on + strand, within DDA3937_RS20245 at 4611.650 kb on + strand, within DDA3937_RS20245 at 4611.650 kb on + strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.651 kb on - strand, within DDA3937_RS20245 at 4611.706 kb on + strand, within DDA3937_RS20245 at 4611.706 kb on + strand, within DDA3937_RS20245 at 4611.706 kb on + strand, within DDA3937_RS20245 at 4611.706 kb on + strand, within DDA3937_RS20245 at 4611.706 kb on + strand, within DDA3937_RS20245 at 4611.706 kb on + strand, within DDA3937_RS20245 at 4611.706 kb on + strand, within DDA3937_RS20245 at 4611.706 kb on + strand at 4611.707 kb on - strand, within DDA3937_RS20245 at 4611.707 kb on - strand, within DDA3937_RS20245 at 4611.707 kb on - strand, within DDA3937_RS20245 at 4611.707 kb on - strand, within DDA3937_RS20245 at 4611.707 kb on - strand, within DDA3937_RS20245 at 4611.707 kb on - strand, within DDA3937_RS20245 at 4611.707 kb on - strand, within DDA3937_RS20245 at 4611.707 kb on - strand, within DDA3937_RS20245 at 4611.710 kb on + strand, within DDA3937_RS20245 at 4611.710 kb on + strand, within DDA3937_RS20245 at 4611.710 kb on + strand, within DDA3937_RS20245 at 4611.710 kb on + strand, within DDA3937_RS20245 at 4611.710 kb on + strand, within DDA3937_RS20245
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,608,631 - -2.2 4,608,727 + -0.5 4,608,729 + -0.3 4,608,807 + +0.7 4,608,817 + -2.6 4,608,817 + -0.4 4,608,817 + +0.0 4,608,817 + +0.2 4,608,818 - -0.2 4,608,818 - -0.3 4,609,355 + +0.6 4,609,355 + -1.2 4,609,356 - -1.4 4,609,356 - -0.2 4,609,356 - +0.2 4,609,369 - +0.0 4,609,397 + -0.1 4,609,401 + -0.4 4,609,401 + -1.3 4,609,445 + -1.3 4,609,445 + +0.1 4,609,445 + +0.3 4,609,445 + +0.0 4,609,463 + -0.7 4,609,463 + -2.4 4,609,463 + +0.6 4,609,463 + -1.7 4,609,463 + -1.6 4,609,615 + +0.4 4,609,616 - DDA3937_RS20235 0.17 +1.9 4,609,616 - DDA3937_RS20235 0.17 -0.4 4,609,679 + DDA3937_RS20235 0.21 -0.7 4,609,679 + DDA3937_RS20235 0.21 -0.1 4,609,679 + DDA3937_RS20235 0.21 -0.6 4,609,679 + DDA3937_RS20235 0.21 -0.2 4,609,688 - DDA3937_RS20235 0.22 -1.6 4,609,688 - DDA3937_RS20235 0.22 -0.8 4,609,758 + DDA3937_RS20235 0.26 -1.2 4,609,812 + DDA3937_RS20235 0.30 +0.0 4,609,813 - DDA3937_RS20235 0.30 -1.8 4,609,813 - DDA3937_RS20235 0.30 +2.0 4,609,854 - DDA3937_RS20235 0.33 -1.4 4,609,934 - DDA3937_RS20235 0.39 -1.0 4,609,934 - DDA3937_RS20235 0.39 +1.0 4,609,961 + DDA3937_RS20235 0.40 -0.2 4,609,995 - DDA3937_RS20235 0.43 -0.4 4,610,023 + DDA3937_RS20235 0.45 -0.1 4,610,094 + DDA3937_RS20235 0.50 -0.7 4,610,115 - DDA3937_RS20235 0.51 -0.6 4,610,115 - DDA3937_RS20235 0.51 +0.6 4,610,115 - DDA3937_RS20235 0.51 -1.9 4,610,115 - DDA3937_RS20235 0.51 +0.3 4,610,115 - DDA3937_RS20235 0.51 -1.0 4,610,117 + DDA3937_RS20235 0.51 +0.8 4,610,117 + DDA3937_RS20235 0.51 -1.7 4,610,117 + DDA3937_RS20235 0.51 -0.4 4,610,118 - DDA3937_RS20235 0.51 -1.3 4,610,118 - DDA3937_RS20235 0.51 -0.3 4,610,187 - DDA3937_RS20235 0.56 +0.3 4,610,260 + DDA3937_RS20235 0.61 -1.2 4,610,261 - DDA3937_RS20235 0.61 -0.6 4,610,261 - DDA3937_RS20235 0.61 -1.6 4,610,309 + DDA3937_RS20235 0.64 -0.9 4,610,437 + DDA3937_RS20235 0.73 -0.9 4,610,735 - -1.1 4,610,809 - +1.6 4,610,840 + -2.3 4,610,840 + -1.2 4,610,840 + -1.3 4,610,841 - -1.6 4,610,841 - -0.8 4,610,868 + -1.4 4,610,908 + +0.6 4,610,982 + DDA3937_RS20240 0.19 -0.1 4,610,983 - DDA3937_RS20240 0.19 -1.0 4,611,048 + DDA3937_RS20240 0.29 -0.1 4,611,048 + DDA3937_RS20240 0.29 +0.3 4,611,048 + DDA3937_RS20240 0.29 -0.6 4,611,048 + DDA3937_RS20240 0.29 -0.4 4,611,049 - DDA3937_RS20240 0.30 +0.3 4,611,049 - DDA3937_RS20240 0.30 +0.4 4,611,049 - DDA3937_RS20240 0.30 -0.6 4,611,049 - DDA3937_RS20240 0.30 -0.6 4,611,049 - DDA3937_RS20240 0.30 -0.4 4,611,066 + DDA3937_RS20240 0.32 -0.8 4,611,132 + DDA3937_RS20240 0.43 -0.1 4,611,132 + DDA3937_RS20240 0.43 -0.4 4,611,132 + DDA3937_RS20240 0.43 -0.6 4,611,174 + DDA3937_RS20240 0.50 -0.1 4,611,177 + DDA3937_RS20240 0.50 -0.7 4,611,177 + DDA3937_RS20240 0.50 -1.0 4,611,177 + DDA3937_RS20240 0.50 +0.6 4,611,178 - DDA3937_RS20240 0.51 +0.4 4,611,315 + DDA3937_RS20240 0.73 -0.4 4,611,315 + DDA3937_RS20240 0.73 -0.5 4,611,315 + DDA3937_RS20240 0.73 -0.6 4,611,315 + DDA3937_RS20240 0.73 +0.8 4,611,315 + DDA3937_RS20240 0.73 -0.3 4,611,315 + DDA3937_RS20240 0.73 -1.0 4,611,316 - DDA3937_RS20240 0.73 -0.4 4,611,316 - DDA3937_RS20240 0.73 +1.4 4,611,416 - DDA3937_RS20240 0.89 -1.8 4,611,538 - +0.0 4,611,550 - +0.6 4,611,551 - +0.3 4,611,650 + DDA3937_RS20245 0.13 -0.0 4,611,650 + DDA3937_RS20245 0.13 +0.2 4,611,650 + DDA3937_RS20245 0.13 +0.2 4,611,650 + DDA3937_RS20245 0.13 -0.3 4,611,650 + DDA3937_RS20245 0.13 -0.4 4,611,650 + DDA3937_RS20245 0.13 +0.1 4,611,650 + DDA3937_RS20245 0.13 +0.3 4,611,651 - DDA3937_RS20245 0.13 -0.2 4,611,651 - DDA3937_RS20245 0.13 +0.2 4,611,651 - DDA3937_RS20245 0.13 +0.2 4,611,651 - DDA3937_RS20245 0.13 +1.7 4,611,651 - DDA3937_RS20245 0.13 -0.8 4,611,651 - DDA3937_RS20245 0.13 -2.2 4,611,651 - DDA3937_RS20245 0.13 -0.4 4,611,651 - DDA3937_RS20245 0.13 +0.3 4,611,651 - DDA3937_RS20245 0.13 -1.2 4,611,651 - DDA3937_RS20245 0.13 -0.1 4,611,651 - DDA3937_RS20245 0.13 -0.6 4,611,651 - DDA3937_RS20245 0.13 -0.1 4,611,651 - DDA3937_RS20245 0.13 -1.2 4,611,651 - DDA3937_RS20245 0.13 +1.8 4,611,706 + DDA3937_RS20245 0.17 -0.9 4,611,706 + DDA3937_RS20245 0.17 +1.2 4,611,706 + DDA3937_RS20245 0.17 +0.4 4,611,706 + DDA3937_RS20245 0.17 +0.7 4,611,706 + DDA3937_RS20245 0.17 +1.4 4,611,706 + DDA3937_RS20245 0.17 -0.9 4,611,706 + DDA3937_RS20245 0.17 -0.7 4,611,706 + +0.4 4,611,707 - DDA3937_RS20245 0.17 +0.4 4,611,707 - DDA3937_RS20245 0.17 -0.0 4,611,707 - DDA3937_RS20245 0.17 -0.3 4,611,707 - DDA3937_RS20245 0.17 -0.9 4,611,707 - DDA3937_RS20245 0.17 +0.8 4,611,707 - DDA3937_RS20245 0.17 -0.2 4,611,707 - DDA3937_RS20245 0.17 +0.0 4,611,707 - DDA3937_RS20245 0.17 -0.2 4,611,710 + DDA3937_RS20245 0.17 -0.6 4,611,710 + DDA3937_RS20245 0.17 -0.6 4,611,710 + DDA3937_RS20245 0.17 +0.3 4,611,710 + DDA3937_RS20245 0.17 +0.3 4,611,710 + DDA3937_RS20245 0.17 +0.3
Or see this region's nucleotide sequence