Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20120

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,584,486	-		DDA3937_RS20115	0.87	-1.0
4,584,784	+				+0.7
4,584,784	+				-0.6
4,584,785	-				-0.8
4,584,785	-				+1.0
4,584,867	+				+1.1
4,584,887	-				+1.0
4,584,998	+				+2.2
4,584,999	-				+2.0
4,584,999	-				+1.4
4,585,072	-				+1.9
4,585,085	+				-0.4
4,585,085	+				-0.2
4,585,085	+				+0.7
4,585,085	+				+0.3
4,585,086	-				+0.7
4,585,086	-				+0.1
4,585,086	-				+0.4
4,585,086	-				+1.5
4,585,086	-				+1.0
4,585,086	-				-0.3
4,585,088	+				+0.1
4,585,088	+				-0.5
4,585,089	-				+1.0
4,585,187	+				-0.5
4,585,253	+				-0.3
4,585,253	+				-0.4
4,585,254	-				+1.6
4,585,254	-				+1.7
4,585,309	+				+1.2
4,585,309	+				+0.5
4,585,309	+				+0.0
4,585,309	+				+1.2
4,585,310	-				+1.7
4,585,310	-				+1.6
4,585,310	-				+0.8
4,585,310	-				-0.3
4,585,310	-				+0.4
4,585,346	-				+0.1
4,585,360	-				+0.3
4,585,372	+				+1.0
4,585,373	-				+0.0
4,585,373	-				+1.2
4,585,373	-				+0.4
4,585,373	-				+2.6
4,585,374	+				+1.3
4,585,374	+				+0.4
4,585,375	-				+0.0
4,585,375	-				-1.0
4,585,375	-				+1.1
4,585,528	+		DDA3937_RS20120	0.17	+1.6
4,585,528	+		DDA3937_RS20120	0.17	-0.1
4,585,585	-		DDA3937_RS20120	0.21	+2.2
4,585,683	+		DDA3937_RS20120	0.28	+0.0
4,585,683	+				+0.0
4,585,684	-		DDA3937_RS20120	0.28	-1.1
4,585,684	-		DDA3937_RS20120	0.28	+1.3
4,585,684	-		DDA3937_RS20120	0.28	-0.1
4,585,684	-		DDA3937_RS20120	0.28	+0.0
4,585,688	-		DDA3937_RS20120	0.28	+0.1
4,585,688	-		DDA3937_RS20120	0.28	+1.0
4,585,688	-		DDA3937_RS20120	0.28	+0.0
4,585,747	+		DDA3937_RS20120	0.32	-2.0
4,585,747	+		DDA3937_RS20120	0.32	+0.4
4,585,747	+		DDA3937_RS20120	0.32	+0.8
4,585,747	+		DDA3937_RS20120	0.32	+1.0
4,585,748	-		DDA3937_RS20120	0.32	+1.3
4,585,748	-		DDA3937_RS20120	0.32	+1.0
4,585,789	+		DDA3937_RS20120	0.35	+1.3
4,585,789	+		DDA3937_RS20120	0.35	+1.5
4,585,790	-		DDA3937_RS20120	0.35	+1.5
4,585,954	-		DDA3937_RS20120	0.46	+0.0
4,585,954	-		DDA3937_RS20120	0.46	+0.6
4,586,011	+		DDA3937_RS20120	0.50	+1.7
4,586,029	-		DDA3937_RS20120	0.51	+0.4
4,586,029	-		DDA3937_RS20120	0.51	+0.5
4,586,029	-		DDA3937_RS20120	0.51	+0.9
4,586,086	-		DDA3937_RS20120	0.55	-0.9
4,586,086	-		DDA3937_RS20120	0.55	+1.9
4,586,152	+		DDA3937_RS20120	0.59	+0.3
4,586,207	+		DDA3937_RS20120	0.63	+0.7
4,586,342	-		DDA3937_RS20120	0.72	+1.0
4,586,342	-		DDA3937_RS20120	0.72	+0.3
4,586,476	+		DDA3937_RS20120	0.81	+0.6
4,586,477	-		DDA3937_RS20120	0.81	+1.2
4,586,477	-		DDA3937_RS20120	0.81	+0.7
4,586,569	-		DDA3937_RS20120	0.87	+1.0
4,586,608	+		DDA3937_RS20120	0.89	-1.6
4,586,742	+				-0.7
4,586,783	+				-1.6
4,586,783	+				+1.4
4,586,783	+				-0.6
4,586,792	-				+0.6
4,586,792	-				+1.1
4,586,797	+				+0.9
4,586,807	+				-0.9
4,586,823	+				+1.4
4,586,824	-				+1.9
4,586,840	-				+0.1
4,586,840	-				-0.7
4,586,842	+				+1.0
4,586,842	+				+1.0
4,586,843	-				+1.0
4,586,843	-				+0.7
4,586,843	-				-0.6
4,586,843	-				+1.7
4,586,843	-				+1.4
4,586,843	-				-0.4
4,586,843	-				+0.0
4,586,867	+				+0.4
4,586,867	+				-1.8
4,586,867	+				-1.1
4,586,868	-				-0.6
4,586,868	-				+1.4
4,586,868	-				+0.5
4,586,868	-				+1.0
4,586,870	+				+0.7
4,586,870	+				+0.3
4,586,870	+				-0.9
4,586,889	+				-1.1
4,586,909	+				+0.0
4,586,909	+				-0.3
4,586,909	+				+0.2
4,586,910	-		DDA3937_RS20125	0.10	+0.4
4,586,945	+		DDA3937_RS20125	0.19	-0.4
4,586,946	-		DDA3937_RS20125	0.19	-0.2
4,586,964	+		DDA3937_RS20125	0.24	-0.3
4,586,989	-		DDA3937_RS20125	0.30	-0.2
4,587,012	+		DDA3937_RS20125	0.36	-1.0
4,587,013	-		DDA3937_RS20125	0.36	-1.6
4,587,013	-		DDA3937_RS20125	0.36	-0.1
4,587,013	-		DDA3937_RS20125	0.36	-0.8
4,587,013	-		DDA3937_RS20125	0.36	+1.3
4,587,057	+		DDA3937_RS20125	0.47	-0.8
4,587,058	-		DDA3937_RS20125	0.47	+0.0
4,587,059	+		DDA3937_RS20125	0.47	+0.0
4,587,060	-		DDA3937_RS20125	0.48	+1.0
4,587,060	-		DDA3937_RS20125	0.48	-0.2
4,587,066	-		DDA3937_RS20125	0.49	+0.9
4,587,112	+		DDA3937_RS20125	0.60	+0.4
4,587,112	+		DDA3937_RS20125	0.60	-0.6
4,587,156	-		DDA3937_RS20125	0.71	-0.9
4,587,174	-		DDA3937_RS20125	0.76	-0.4
4,587,249	+				+0.4
4,587,260	-				-0.1
4,587,286	+				+1.0
4,587,297	+				+0.5
4,587,298	-				-0.7
4,587,298	-				+0.6
4,587,298	-				+0.1
4,587,354	+				-0.8
4,587,354	+				-1.3
4,587,354	+				+0.7
4,587,364	-				-0.1
4,587,399	+				+0.6
4,587,399	+				-0.7
4,587,400	-				-0.3
4,587,416	-				+0.8
4,587,576	+		DDA3937_RS20130	0.14	-1.0
4,587,576	+		DDA3937_RS20130	0.14	-0.4
4,587,577	-		DDA3937_RS20130	0.15	+0.0
4,587,577	-		DDA3937_RS20130	0.15	+0.7
4,587,577	-		DDA3937_RS20130	0.15	-0.6
4,587,678	+		DDA3937_RS20130	0.21	+0.0
4,587,679	-		DDA3937_RS20130	0.21	+0.0
4,587,679	-		DDA3937_RS20130	0.21	-1.9
4,587,764	+		DDA3937_RS20130	0.27	-1.6
4,587,765	-		DDA3937_RS20130	0.27	+0.6