Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20115

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,580,528	-				-0.2
4,580,544	-				-0.1
4,580,544	-				+0.3
4,580,625	+				+0.0
4,580,625	+				+1.7
4,580,626	-				-0.3
4,580,626	-				-0.9
4,580,626	-				+0.0
4,580,670	+				-0.3
4,580,670	+				-1.6
4,580,670	+				-0.6
4,580,670	+				+0.0
4,580,670	+				-1.0
4,580,670	+				+0.1
4,580,670	+				+0.2
4,580,671	-				+1.3
4,580,671	-				+0.4
4,580,671	-				-0.7
4,580,671	-				+1.0
4,580,671	-				-2.0
4,580,671	-				-0.2
4,580,671	-				-0.6
4,580,673	+				+0.1
4,580,674	-				-0.6
4,580,674	-				+0.2
4,580,682	+				+1.0
4,580,734	-		DDA3937_RS20110	0.21	-1.2
4,580,774	+		DDA3937_RS20110	0.35	-0.4
4,580,775	-		DDA3937_RS20110	0.36	-0.0
4,580,945	-				-0.8
4,580,949	+				-0.4
4,580,954	-				-0.6
4,580,994	+				+0.8
4,580,994	+				+1.0
4,580,994	+				+0.8
4,580,994	+				-0.3
4,580,994	+				+0.7
4,580,995	-				+0.2
4,580,995	-				+0.9
4,580,995	-				+0.6
4,580,995	-				-0.8
4,580,997	+				-0.5
4,581,047	-				+1.3
4,581,080	+				+1.6
4,581,081	-				+1.0
4,581,403	+		DDA3937_RS20115	0.10	+1.0
4,581,404	-		DDA3937_RS20115	0.10	+1.0
4,581,405	+		DDA3937_RS20115	0.10	+1.6
4,581,405	+		DDA3937_RS20115	0.10	+0.6
4,581,405	+		DDA3937_RS20115	0.10	+1.8
4,581,405	+		DDA3937_RS20115	0.10	+0.3
4,581,406	-		DDA3937_RS20115	0.10	+2.1
4,581,406	-		DDA3937_RS20115	0.10	-1.0
4,581,652	-		DDA3937_RS20115	0.16	+0.3
4,581,652	-		DDA3937_RS20115	0.16	+1.5
4,581,733	+		DDA3937_RS20115	0.18	+2.0
4,581,733	+		DDA3937_RS20115	0.18	+1.7
4,581,747	+		DDA3937_RS20115	0.19	+0.1
4,581,747	+		DDA3937_RS20115	0.19	+0.4
4,581,747	+		DDA3937_RS20115	0.19	+2.2
4,581,748	-		DDA3937_RS20115	0.19	-0.5
4,581,748	-		DDA3937_RS20115	0.19	+1.0
4,581,748	-		DDA3937_RS20115	0.19	+0.7
4,581,748	-		DDA3937_RS20115	0.19	+1.4
4,581,871	+		DDA3937_RS20115	0.22	+0.6
4,581,929	+		DDA3937_RS20115	0.23	+1.7
4,581,930	-		DDA3937_RS20115	0.23	+1.7
4,582,194	+		DDA3937_RS20115	0.30	+1.0
4,582,195	-		DDA3937_RS20115	0.30	+1.4
4,582,370	-		DDA3937_RS20115	0.34	+2.4
4,582,370	-		DDA3937_RS20115	0.34	+1.4
4,582,707	+		DDA3937_RS20115	0.43	+1.6
4,582,710	+				+0.0
4,582,710	+		DDA3937_RS20115	0.43	+2.0
4,582,710	+				+1.0
4,582,710	+		DDA3937_RS20115	0.43	+1.8
4,582,711	-		DDA3937_RS20115	0.43	+0.8
4,582,711	-				+0.4
4,582,941	+		DDA3937_RS20115	0.49	-1.0
4,582,941	+		DDA3937_RS20115	0.49	+0.8
4,583,012	+		DDA3937_RS20115	0.51	+0.4
4,583,012	+		DDA3937_RS20115	0.51	+1.3
4,583,012	+		DDA3937_RS20115	0.51	+1.9
4,583,013	-		DDA3937_RS20115	0.51	+1.9
4,583,013	-		DDA3937_RS20115	0.51	+2.3
4,583,128	+		DDA3937_RS20115	0.53	+2.1
4,583,129	-		DDA3937_RS20115	0.53	+0.6
4,583,145	+		DDA3937_RS20115	0.54	-0.3
4,583,145	+		DDA3937_RS20115	0.54	+0.7
4,583,186	+		DDA3937_RS20115	0.55	-1.0
4,583,225	+		DDA3937_RS20115	0.56	+1.1
4,583,326	-		DDA3937_RS20115	0.58	+1.4
4,583,418	+		DDA3937_RS20115	0.61	+0.6
4,583,419	-		DDA3937_RS20115	0.61	+1.0
4,583,470	-		DDA3937_RS20115	0.62	+1.7
4,583,472	+		DDA3937_RS20115	0.62	+2.3
4,583,472	+		DDA3937_RS20115	0.62	+1.6
4,583,472	+		DDA3937_RS20115	0.62	+1.0
4,583,472	+				+3.0
4,583,473	-		DDA3937_RS20115	0.62	+1.4
4,583,473	-		DDA3937_RS20115	0.62	+0.8
4,583,473	-		DDA3937_RS20115	0.62	+0.7
4,583,473	-		DDA3937_RS20115	0.62	+1.0
4,583,473	-		DDA3937_RS20115	0.62	+2.3
4,583,476	+		DDA3937_RS20115	0.62	-1.3
4,583,477	-		DDA3937_RS20115	0.62	+0.3
4,583,477	-				-0.3
4,583,493	+		DDA3937_RS20115	0.63	+1.2
4,583,493	+				+1.8
4,583,494	-		DDA3937_RS20115	0.63	+1.0
4,583,494	-		DDA3937_RS20115	0.63	+1.5
4,583,494	-		DDA3937_RS20115	0.63	+1.5
4,583,509	+		DDA3937_RS20115	0.63	-0.8
4,583,539	-		DDA3937_RS20115	0.64	+0.0
4,583,583	+		DDA3937_RS20115	0.65	+0.4
4,583,584	-		DDA3937_RS20115	0.65	+2.2
4,583,597	-		DDA3937_RS20115	0.65	+2.0
4,583,598	+		DDA3937_RS20115	0.65	+0.7
4,583,598	+		DDA3937_RS20115	0.65	+1.3
4,583,598	+		DDA3937_RS20115	0.65	+1.3
4,583,598	+		DDA3937_RS20115	0.65	+0.6
4,583,599	-		DDA3937_RS20115	0.65	+1.3
4,583,599	-		DDA3937_RS20115	0.65	+0.3
4,583,613	+		DDA3937_RS20115	0.66	+1.2
4,583,614	-		DDA3937_RS20115	0.66	+2.2
4,583,614	-		DDA3937_RS20115	0.66	+0.2
4,583,614	-		DDA3937_RS20115	0.66	+0.3
4,583,670	+		DDA3937_RS20115	0.67	+2.0
4,583,671	-		DDA3937_RS20115	0.67	+2.7
4,583,893	-				+1.0
4,583,955	+		DDA3937_RS20115	0.74	-0.2
4,583,955	+		DDA3937_RS20115	0.74	+1.2
4,583,956	-				+2.3
4,583,956	-		DDA3937_RS20115	0.74	+0.2
4,584,018	+		DDA3937_RS20115	0.76	+1.4
4,584,018	+		DDA3937_RS20115	0.76	+2.2
4,584,018	+		DDA3937_RS20115	0.76	+0.2
4,584,019	-		DDA3937_RS20115	0.76	+0.5
4,584,019	-		DDA3937_RS20115	0.76	+0.7
4,584,019	-		DDA3937_RS20115	0.76	+0.4
4,584,081	+		DDA3937_RS20115	0.77	+0.3
4,584,081	+		DDA3937_RS20115	0.77	+2.2
4,584,081	+		DDA3937_RS20115	0.77	+1.6
4,584,082	-		DDA3937_RS20115	0.77	+0.2
4,584,125	-		DDA3937_RS20115	0.78	+0.9
4,584,125	-		DDA3937_RS20115	0.78	+2.3
4,584,486	-		DDA3937_RS20115	0.87	-1.0
4,584,784	+				+0.7
4,584,784	+				-0.6
4,584,785	-				-0.8
4,584,785	-				+1.0
4,584,867	+				+1.1
4,584,887	-				+1.0
4,584,998	+				+2.2
4,584,999	-				+2.0
4,584,999	-				+1.4
4,585,072	-				+1.9
4,585,085	+				-0.4
4,585,085	+				-0.2
4,585,085	+				+0.7
4,585,085	+				+0.3
4,585,086	-				+0.7
4,585,086	-				+0.1
4,585,086	-				+0.4
4,585,086	-				+1.5
4,585,086	-				+1.0
4,585,086	-				-0.3
4,585,088	+				+0.1
4,585,088	+				-0.5
4,585,089	-				+1.0
4,585,187	+				-0.5
4,585,253	+				-0.3
4,585,253	+				-0.4
4,585,254	-				+1.6
4,585,254	-				+1.7
4,585,309	+				+1.2
4,585,309	+				+0.5
4,585,309	+				+0.0
4,585,309	+				+1.2
4,585,310	-				+1.7
4,585,310	-				+1.6
4,585,310	-				+0.8
4,585,310	-				-0.3
4,585,310	-				+0.4
4,585,346	-				+0.1
4,585,360	-				+0.3
4,585,372	+				+1.0
4,585,373	-				+0.0
4,585,373	-				+1.2
4,585,373	-				+0.4
4,585,373	-				+2.6
4,585,374	+				+1.3
4,585,374	+				+0.4
4,585,375	-				+0.0
4,585,375	-				-1.0
4,585,375	-				+1.1
4,585,528	+		DDA3937_RS20120	0.17	+1.6
4,585,528	+		DDA3937_RS20120	0.17	-0.1
4,585,585	-		DDA3937_RS20120	0.21	+2.2
4,585,683	+		DDA3937_RS20120	0.28	+0.0
4,585,683	+				+0.0
4,585,684	-		DDA3937_RS20120	0.28	-1.1
4,585,684	-		DDA3937_RS20120	0.28	+1.3
4,585,684	-		DDA3937_RS20120	0.28	-0.1
4,585,684	-		DDA3937_RS20120	0.28	+0.0
4,585,688	-		DDA3937_RS20120	0.28	+0.1
4,585,688	-		DDA3937_RS20120	0.28	+1.0
4,585,688	-		DDA3937_RS20120	0.28	+0.0
4,585,747	+		DDA3937_RS20120	0.32	-2.0
4,585,747	+		DDA3937_RS20120	0.32	+0.4
4,585,747	+		DDA3937_RS20120	0.32	+0.8
4,585,747	+		DDA3937_RS20120	0.32	+1.0
4,585,748	-		DDA3937_RS20120	0.32	+1.3
4,585,748	-		DDA3937_RS20120	0.32	+1.0
4,585,789	+		DDA3937_RS20120	0.35	+1.3
4,585,789	+		DDA3937_RS20120	0.35	+1.5
4,585,790	-		DDA3937_RS20120	0.35	+1.5
4,585,954	-		DDA3937_RS20120	0.46	+0.0
4,585,954	-		DDA3937_RS20120	0.46	+0.6