Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19900 and DDA3937_RS19905 are separated by 88 nucleotides DDA3937_RS19905 and DDA3937_RS19910 are separated by 59 nucleotides DDA3937_RS19910 and DDA3937_RS19915 are separated by 57 nucleotides
DDA3937_RS19900: DDA3937_RS19900 - diaminopimelate epimerase, at 4,533,207 to 4,534,031
_RS19900
DDA3937_RS19905: DDA3937_RS19905 - lipoprotein, at 4,534,120 to 4,534,302
_RS19905
DDA3937_RS19910: DDA3937_RS19910 - iron donor protein CyaY, at 4,534,362 to 4,534,682
_RS19910
DDA3937_RS19915: DDA3937_RS19915 - class I adenylate cyclase, at 4,534,740 to 4,537,298
_RS19915
Position (kb)
4534
4535 Strain fitness (log2 ratio)
-2
-1
0
1 at 4534.205 kb on + strand, within DDA3937_RS19905 at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.313 kb on - strand at 4534.322 kb on - strand at 4534.324 kb on - strand at 4534.361 kb on + strand at 4534.405 kb on + strand, within DDA3937_RS19910 at 4534.405 kb on + strand at 4534.406 kb on - strand, within DDA3937_RS19910 at 4534.464 kb on - strand, within DDA3937_RS19910 at 4534.579 kb on - strand, within DDA3937_RS19910 at 4534.681 kb on - strand at 4534.681 kb on - strand at 4535.179 kb on + strand, within DDA3937_RS19915 at 4535.375 kb on - strand, within DDA3937_RS19915
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,534,205 + DDA3937_RS19905 0.46 -0.3 4,534,313 - +0.8 4,534,313 - -0.2 4,534,313 - +0.7 4,534,313 - +0.2 4,534,313 - +0.5 4,534,313 - +1.7 4,534,313 - +0.8 4,534,313 - +1.0 4,534,313 - -0.1 4,534,313 - +0.3 4,534,313 - +1.0 4,534,313 - -0.1 4,534,313 - +0.3 4,534,313 - +1.5 4,534,313 - +0.6 4,534,313 - +0.5 4,534,313 - +1.0 4,534,313 - -0.6 4,534,313 - -0.6 4,534,313 - +1.2 4,534,322 - -0.4 4,534,324 - -1.9 4,534,361 + +0.3 4,534,405 + DDA3937_RS19910 0.13 -1.1 4,534,405 + -0.6 4,534,406 - DDA3937_RS19910 0.14 -0.3 4,534,464 - DDA3937_RS19910 0.32 -1.5 4,534,579 - DDA3937_RS19910 0.68 +0.2 4,534,681 - +0.6 4,534,681 - -0.9 4,535,179 + DDA3937_RS19915 0.17 -1.1 4,535,375 - DDA3937_RS19915 0.25 +0.7
Or see this region's nucleotide sequence