Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19910

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS19900 and DDA3937_RS19905 are separated by 88 nucleotidesDDA3937_RS19905 and DDA3937_RS19910 are separated by 59 nucleotidesDDA3937_RS19910 and DDA3937_RS19915 are separated by 57 nucleotides DDA3937_RS19900: DDA3937_RS19900 - diaminopimelate epimerase, at 4,533,207 to 4,534,031 _RS19900 DDA3937_RS19905: DDA3937_RS19905 - lipoprotein, at 4,534,120 to 4,534,302 _RS19905 DDA3937_RS19910: DDA3937_RS19910 - iron donor protein CyaY, at 4,534,362 to 4,534,682 _RS19910 DDA3937_RS19915: DDA3937_RS19915 - class I adenylate cyclase, at 4,534,740 to 4,537,298 _RS19915 Position (kb) 4534 4535Strain fitness (log2 ratio) -2 -1 0 1at 4534.205 kb on + strand, within DDA3937_RS19905at 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.313 kb on - strandat 4534.322 kb on - strandat 4534.324 kb on - strandat 4534.361 kb on + strandat 4534.405 kb on + strand, within DDA3937_RS19910at 4534.405 kb on + strandat 4534.406 kb on - strand, within DDA3937_RS19910at 4534.464 kb on - strand, within DDA3937_RS19910at 4534.579 kb on - strand, within DDA3937_RS19910at 4534.681 kb on - strandat 4534.681 kb on - strandat 4535.179 kb on + strand, within DDA3937_RS19915at 4535.375 kb on - strand, within DDA3937_RS19915

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,534,205 + DDA3937_RS19905 0.46 -0.3
4,534,313 - +0.8
4,534,313 - -0.2
4,534,313 - +0.7
4,534,313 - +0.2
4,534,313 - +0.5
4,534,313 - +1.7
4,534,313 - +0.8
4,534,313 - +1.0
4,534,313 - -0.1
4,534,313 - +0.3
4,534,313 - +1.0
4,534,313 - -0.1
4,534,313 - +0.3
4,534,313 - +1.5
4,534,313 - +0.6
4,534,313 - +0.5
4,534,313 - +1.0
4,534,313 - -0.6
4,534,313 - -0.6
4,534,313 - +1.2
4,534,322 - -0.4
4,534,324 - -1.9
4,534,361 + +0.3
4,534,405 + DDA3937_RS19910 0.13 -1.1
4,534,405 + -0.6
4,534,406 - DDA3937_RS19910 0.14 -0.3
4,534,464 - DDA3937_RS19910 0.32 -1.5
4,534,579 - DDA3937_RS19910 0.68 +0.2
4,534,681 - +0.6
4,534,681 - -0.9
4,535,179 + DDA3937_RS19915 0.17 -1.1
4,535,375 - DDA3937_RS19915 0.25 +0.7

Or see this region's nucleotide sequence