Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19780

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS19775 and DDA3937_RS19780 are separated by 248 nucleotidesDDA3937_RS19780 and DDA3937_RS19785 are separated by 10 nucleotides DDA3937_RS19775: DDA3937_RS19775 - gluconate transporter, at 4,503,380 to 4,504,696 _RS19775 DDA3937_RS19780: DDA3937_RS19780 - gluconokinase, at 4,504,945 to 4,505,463 _RS19780 DDA3937_RS19785: DDA3937_RS19785 - gluconate operon transcriptional repressor GntR, at 4,505,474 to 4,506,472 _RS19785 Position (kb) 4504 4505 4506Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4503.959 kb on + strand, within DDA3937_RS19775at 4503.962 kb on + strand, within DDA3937_RS19775at 4503.963 kb on - strand, within DDA3937_RS19775at 4503.963 kb on - strand, within DDA3937_RS19775at 4503.963 kb on - strand, within DDA3937_RS19775at 4503.963 kb on - strand, within DDA3937_RS19775at 4504.069 kb on + strand, within DDA3937_RS19775at 4504.069 kb on + strand, within DDA3937_RS19775at 4504.069 kb on + strand, within DDA3937_RS19775at 4504.070 kb on - strand, within DDA3937_RS19775at 4504.070 kb on - strand, within DDA3937_RS19775at 4504.070 kb on - strand, within DDA3937_RS19775at 4504.070 kb on - strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.071 kb on + strand, within DDA3937_RS19775at 4504.072 kb on - strand, within DDA3937_RS19775at 4504.072 kb on - strand, within DDA3937_RS19775at 4504.072 kb on - strand, within DDA3937_RS19775at 4504.072 kb on - strandat 4504.072 kb on - strand, within DDA3937_RS19775at 4504.072 kb on - strand, within DDA3937_RS19775at 4504.073 kb on + strand, within DDA3937_RS19775at 4504.073 kb on + strand, within DDA3937_RS19775at 4504.073 kb on + strand, within DDA3937_RS19775at 4504.073 kb on + strand, within DDA3937_RS19775at 4504.073 kb on + strand, within DDA3937_RS19775at 4504.073 kb on + strand, within DDA3937_RS19775at 4504.073 kb on + strand, within DDA3937_RS19775at 4504.074 kb on - strand, within DDA3937_RS19775at 4504.074 kb on - strandat 4504.074 kb on - strand, within DDA3937_RS19775at 4504.074 kb on - strand, within DDA3937_RS19775at 4504.109 kb on + strand, within DDA3937_RS19775at 4504.120 kb on - strand, within DDA3937_RS19775at 4504.167 kb on + strand, within DDA3937_RS19775at 4504.167 kb on + strand, within DDA3937_RS19775at 4504.167 kb on + strand, within DDA3937_RS19775at 4504.167 kb on + strand, within DDA3937_RS19775at 4504.168 kb on - strand, within DDA3937_RS19775at 4504.284 kb on + strand, within DDA3937_RS19775at 4504.284 kb on + strand, within DDA3937_RS19775at 4504.284 kb on + strand, within DDA3937_RS19775at 4504.285 kb on - strand, within DDA3937_RS19775at 4504.408 kb on + strand, within DDA3937_RS19775at 4504.408 kb on + strand, within DDA3937_RS19775at 4504.408 kb on + strand, within DDA3937_RS19775at 4504.409 kb on - strand, within DDA3937_RS19775at 4504.409 kb on - strand, within DDA3937_RS19775at 4504.409 kb on - strand, within DDA3937_RS19775at 4504.430 kb on - strand, within DDA3937_RS19775at 4504.475 kb on + strand, within DDA3937_RS19775at 4504.475 kb on + strand, within DDA3937_RS19775at 4504.475 kb on + strand, within DDA3937_RS19775at 4504.476 kb on - strand, within DDA3937_RS19775at 4504.637 kb on - strandat 4504.801 kb on + strandat 4504.801 kb on + strandat 4504.802 kb on - strandat 4504.802 kb on - strandat 4504.838 kb on + strandat 4504.840 kb on + strandat 4504.840 kb on + strandat 4504.840 kb on + strandat 4504.840 kb on + strandat 4504.841 kb on - strandat 4504.841 kb on - strandat 4504.881 kb on - strandat 4504.915 kb on + strandat 4504.915 kb on + strandat 4504.915 kb on + strandat 4504.916 kb on - strandat 4504.944 kb on + strandat 4504.959 kb on + strandat 4504.960 kb on - strandat 4504.960 kb on - strandat 4504.962 kb on + strandat 4504.963 kb on - strandat 4505.254 kb on + strand, within DDA3937_RS19780at 4505.380 kb on - strand, within DDA3937_RS19780at 4505.394 kb on + strand, within DDA3937_RS19780at 4505.475 kb on + strandat 4505.475 kb on + strandat 4505.833 kb on - strand, within DDA3937_RS19785at 4505.886 kb on - strand, within DDA3937_RS19785at 4505.916 kb on + strandat 4505.916 kb on + strand, within DDA3937_RS19785at 4505.917 kb on - strand, within DDA3937_RS19785at 4505.949 kb on + strandat 4505.950 kb on - strand, within DDA3937_RS19785at 4506.117 kb on + strand, within DDA3937_RS19785at 4506.169 kb on - strand, within DDA3937_RS19785at 4506.169 kb on - strand, within DDA3937_RS19785at 4506.329 kb on + strandat 4506.330 kb on - strand, within DDA3937_RS19785

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,503,959 + DDA3937_RS19775 0.44 -0.1
4,503,962 + DDA3937_RS19775 0.44 -0.5
4,503,963 - DDA3937_RS19775 0.44 -2.8
4,503,963 - DDA3937_RS19775 0.44 -1.1
4,503,963 - DDA3937_RS19775 0.44 +0.3
4,503,963 - DDA3937_RS19775 0.44 +1.4
4,504,069 + DDA3937_RS19775 0.52 -0.4
4,504,069 + DDA3937_RS19775 0.52 -0.8
4,504,069 + DDA3937_RS19775 0.52 -0.5
4,504,070 - DDA3937_RS19775 0.52 +1.5
4,504,070 - DDA3937_RS19775 0.52 -0.6
4,504,070 - DDA3937_RS19775 0.52 -0.8
4,504,070 - DDA3937_RS19775 0.52 +0.0
4,504,071 + DDA3937_RS19775 0.52 -0.3
4,504,071 + DDA3937_RS19775 0.52 +0.3
4,504,071 + DDA3937_RS19775 0.52 +0.4
4,504,071 + DDA3937_RS19775 0.52 +0.8
4,504,071 + DDA3937_RS19775 0.52 +0.4
4,504,071 + DDA3937_RS19775 0.52 +2.9
4,504,071 + DDA3937_RS19775 0.52 +0.2
4,504,071 + DDA3937_RS19775 0.52 -0.1
4,504,071 + DDA3937_RS19775 0.52 +0.4
4,504,071 + DDA3937_RS19775 0.52 -0.0
4,504,071 + DDA3937_RS19775 0.52 -1.0
4,504,071 + DDA3937_RS19775 0.52 +0.4
4,504,071 + DDA3937_RS19775 0.52 -1.6
4,504,071 + DDA3937_RS19775 0.52 -0.7
4,504,071 + DDA3937_RS19775 0.52 +1.1
4,504,071 + DDA3937_RS19775 0.52 +1.3
4,504,072 - DDA3937_RS19775 0.53 -0.1
4,504,072 - DDA3937_RS19775 0.53 -0.3
4,504,072 - DDA3937_RS19775 0.53 -0.5
4,504,072 - -1.0
4,504,072 - DDA3937_RS19775 0.53 -0.2
4,504,072 - DDA3937_RS19775 0.53 +0.2
4,504,073 + DDA3937_RS19775 0.53 -1.0
4,504,073 + DDA3937_RS19775 0.53 -1.7
4,504,073 + DDA3937_RS19775 0.53 -1.5
4,504,073 + DDA3937_RS19775 0.53 -0.6
4,504,073 + DDA3937_RS19775 0.53 -0.8
4,504,073 + DDA3937_RS19775 0.53 +0.0
4,504,073 + DDA3937_RS19775 0.53 -0.4
4,504,074 - DDA3937_RS19775 0.53 +0.2
4,504,074 - +1.0
4,504,074 - DDA3937_RS19775 0.53 +0.2
4,504,074 - DDA3937_RS19775 0.53 -0.0
4,504,109 + DDA3937_RS19775 0.55 -0.6
4,504,120 - DDA3937_RS19775 0.56 -0.5
4,504,167 + DDA3937_RS19775 0.60 +0.5
4,504,167 + DDA3937_RS19775 0.60 -0.6
4,504,167 + DDA3937_RS19775 0.60 -0.1
4,504,167 + DDA3937_RS19775 0.60 +0.2
4,504,168 - DDA3937_RS19775 0.60 -1.4
4,504,284 + DDA3937_RS19775 0.69 +0.7
4,504,284 + DDA3937_RS19775 0.69 -1.3
4,504,284 + DDA3937_RS19775 0.69 -0.0
4,504,285 - DDA3937_RS19775 0.69 +1.1
4,504,408 + DDA3937_RS19775 0.78 -0.5
4,504,408 + DDA3937_RS19775 0.78 -0.3
4,504,408 + DDA3937_RS19775 0.78 +0.7
4,504,409 - DDA3937_RS19775 0.78 -0.3
4,504,409 - DDA3937_RS19775 0.78 -0.6
4,504,409 - DDA3937_RS19775 0.78 -0.5
4,504,430 - DDA3937_RS19775 0.80 +0.1
4,504,475 + DDA3937_RS19775 0.83 -0.8
4,504,475 + DDA3937_RS19775 0.83 -0.2
4,504,475 + DDA3937_RS19775 0.83 -0.5
4,504,476 - DDA3937_RS19775 0.83 +0.7
4,504,637 - -1.3
4,504,801 + -0.6
4,504,801 + +0.6
4,504,802 - +0.6
4,504,802 - +0.7
4,504,838 + +0.2
4,504,840 + -0.4
4,504,840 + -0.3
4,504,840 + -0.3
4,504,840 + +0.5
4,504,841 - -0.1
4,504,841 - -1.3
4,504,881 - +0.4
4,504,915 + +2.0
4,504,915 + -0.1
4,504,915 + -0.5
4,504,916 - -0.2
4,504,944 + -1.0
4,504,959 + +1.1
4,504,960 - +0.1
4,504,960 - +1.7
4,504,962 + -0.3
4,504,963 - -0.0
4,505,254 + DDA3937_RS19780 0.60 -1.3
4,505,380 - DDA3937_RS19780 0.84 -0.2
4,505,394 + DDA3937_RS19780 0.87 -1.3
4,505,475 + -0.1
4,505,475 + +0.6
4,505,833 - DDA3937_RS19785 0.36 -1.3
4,505,886 - DDA3937_RS19785 0.41 +1.1
4,505,916 + +0.6
4,505,916 + DDA3937_RS19785 0.44 +0.4
4,505,917 - DDA3937_RS19785 0.44 +0.5
4,505,949 + -0.0
4,505,950 - DDA3937_RS19785 0.48 -0.2
4,506,117 + DDA3937_RS19785 0.64 +1.3
4,506,169 - DDA3937_RS19785 0.70 -0.1
4,506,169 - DDA3937_RS19785 0.70 -2.8
4,506,329 + -1.0
4,506,330 - DDA3937_RS19785 0.86 +0.1

Or see this region's nucleotide sequence