Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19590

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS19585 and DDA3937_RS19590 are separated by 422 nucleotidesDDA3937_RS19590 and DDA3937_RS19595 are separated by 198 nucleotidesDDA3937_RS19595 and DDA3937_RS19600 overlap by 4 nucleotides DDA3937_RS19585: DDA3937_RS19585 - ADP compounds hydrolase NudE, at 4,453,991 to 4,454,542 _RS19585 DDA3937_RS19590: DDA3937_RS19590 - intracellular growth attenuator family protein, at 4,454,965 to 4,457,094 _RS19590 DDA3937_RS19595: DDA3937_RS19595 - GMP/IMP nucleotidase, at 4,457,293 to 4,457,997 _RS19595 DDA3937_RS19600: DDA3937_RS19600 - ribosome-associated heat shock protein Hsp15, at 4,457,994 to 4,458,407 _RS19600 Position (kb) 4454 4455 4456 4457 4458Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4454.326 kb on - strand, within DDA3937_RS19585at 4454.326 kb on - strand, within DDA3937_RS19585at 4454.346 kb on + strand, within DDA3937_RS19585at 4454.419 kb on + strand, within DDA3937_RS19585at 4454.419 kb on + strand, within DDA3937_RS19585at 4454.420 kb on - strand, within DDA3937_RS19585at 4454.420 kb on - strand, within DDA3937_RS19585at 4454.420 kb on - strand, within DDA3937_RS19585at 4454.420 kb on - strand, within DDA3937_RS19585at 4454.420 kb on - strand, within DDA3937_RS19585at 4454.420 kb on - strand, within DDA3937_RS19585at 4454.449 kb on + strand, within DDA3937_RS19585at 4454.534 kb on - strandat 4454.534 kb on - strandat 4454.534 kb on - strandat 4454.536 kb on + strandat 4454.536 kb on + strandat 4454.536 kb on + strandat 4454.536 kb on + strandat 4454.536 kb on + strandat 4454.537 kb on - strandat 4454.537 kb on - strandat 4454.537 kb on - strandat 4454.537 kb on - strandat 4454.552 kb on + strandat 4454.553 kb on - strandat 4454.553 kb on - strandat 4454.553 kb on - strandat 4454.554 kb on + strandat 4454.639 kb on - strandat 4454.639 kb on - strandat 4454.669 kb on - strandat 4454.674 kb on + strandat 4454.675 kb on - strandat 4454.675 kb on - strandat 4454.675 kb on - strandat 4454.687 kb on - strandat 4454.687 kb on - strandat 4454.687 kb on - strandat 4454.700 kb on + strandat 4454.701 kb on - strandat 4454.708 kb on - strandat 4454.720 kb on + strandat 4454.721 kb on - strandat 4454.721 kb on - strandat 4454.739 kb on + strandat 4454.769 kb on + strandat 4454.770 kb on - strandat 4454.776 kb on - strandat 4454.776 kb on - strandat 4454.817 kb on - strandat 4454.830 kb on + strandat 4454.830 kb on + strandat 4454.836 kb on - strandat 4454.851 kb on + strandat 4454.851 kb on + strandat 4454.851 kb on + strandat 4454.855 kb on - strandat 4454.875 kb on - strandat 4454.893 kb on - strandat 4454.893 kb on - strandat 4454.943 kb on + strandat 4454.944 kb on - strandat 4454.961 kb on + strandat 4454.961 kb on + strandat 4454.961 kb on + strandat 4454.964 kb on + strandat 4454.975 kb on + strandat 4454.993 kb on + strandat 4455.034 kb on + strandat 4455.337 kb on + strandat 4455.338 kb on - strand, within DDA3937_RS19590at 4455.602 kb on + strand, within DDA3937_RS19590at 4455.850 kb on + strand, within DDA3937_RS19590at 4456.154 kb on + strand, within DDA3937_RS19590at 4456.637 kb on - strand, within DDA3937_RS19590at 4457.038 kb on + strandat 4457.038 kb on + strandat 4457.038 kb on + strandat 4457.039 kb on - strandat 4457.039 kb on - strandat 4457.039 kb on - strandat 4457.042 kb on - strandat 4457.042 kb on - strandat 4457.042 kb on - strandat 4457.042 kb on - strandat 4457.086 kb on + strandat 4457.086 kb on + strandat 4457.086 kb on + strandat 4457.086 kb on + strandat 4457.086 kb on + strandat 4457.086 kb on + strandat 4457.087 kb on - strandat 4457.087 kb on - strandat 4457.087 kb on - strandat 4457.087 kb on - strandat 4457.087 kb on - strandat 4457.087 kb on - strandat 4457.087 kb on - strandat 4457.092 kb on + strandat 4457.136 kb on + strandat 4457.225 kb on + strandat 4457.225 kb on + strandat 4457.225 kb on + strandat 4457.226 kb on - strandat 4457.226 kb on - strandat 4457.226 kb on - strandat 4457.233 kb on + strandat 4457.233 kb on + strandat 4457.233 kb on + strandat 4457.276 kb on + strandat 4457.276 kb on + strandat 4457.276 kb on + strandat 4457.276 kb on + strandat 4457.276 kb on + strandat 4457.276 kb on + strandat 4457.276 kb on + strandat 4457.276 kb on + strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.277 kb on - strandat 4457.377 kb on + strand, within DDA3937_RS19595at 4457.377 kb on + strand, within DDA3937_RS19595at 4457.377 kb on + strandat 4457.377 kb on + strand, within DDA3937_RS19595at 4457.378 kb on - strand, within DDA3937_RS19595at 4457.464 kb on + strand, within DDA3937_RS19595at 4457.494 kb on + strand, within DDA3937_RS19595at 4457.494 kb on + strand, within DDA3937_RS19595at 4457.495 kb on - strand, within DDA3937_RS19595at 4457.507 kb on - strand, within DDA3937_RS19595at 4457.532 kb on + strand, within DDA3937_RS19595at 4457.536 kb on + strand, within DDA3937_RS19595at 4457.537 kb on - strand, within DDA3937_RS19595at 4457.537 kb on - strand, within DDA3937_RS19595at 4457.537 kb on - strand, within DDA3937_RS19595at 4457.537 kb on - strand, within DDA3937_RS19595at 4457.537 kb on - strand, within DDA3937_RS19595at 4457.537 kb on - strand, within DDA3937_RS19595at 4457.628 kb on + strand, within DDA3937_RS19595at 4457.628 kb on + strand, within DDA3937_RS19595at 4457.629 kb on - strand, within DDA3937_RS19595at 4457.633 kb on + strand, within DDA3937_RS19595at 4457.634 kb on - strand, within DDA3937_RS19595at 4457.672 kb on + strand, within DDA3937_RS19595at 4457.672 kb on + strand, within DDA3937_RS19595at 4457.672 kb on + strand, within DDA3937_RS19595at 4457.673 kb on - strand, within DDA3937_RS19595at 4457.673 kb on - strand, within DDA3937_RS19595at 4457.673 kb on - strand, within DDA3937_RS19595at 4457.673 kb on - strand, within DDA3937_RS19595at 4457.705 kb on + strand, within DDA3937_RS19595at 4457.705 kb on + strand, within DDA3937_RS19595at 4457.706 kb on - strandat 4457.709 kb on - strand, within DDA3937_RS19595at 4457.721 kb on + strand, within DDA3937_RS19595at 4457.721 kb on + strand, within DDA3937_RS19595at 4457.721 kb on + strand, within DDA3937_RS19595at 4457.722 kb on - strand, within DDA3937_RS19595at 4457.722 kb on - strand, within DDA3937_RS19595at 4457.725 kb on + strand, within DDA3937_RS19595at 4457.725 kb on + strand, within DDA3937_RS19595at 4457.726 kb on - strand, within DDA3937_RS19595at 4457.753 kb on + strand, within DDA3937_RS19595at 4457.797 kb on - strand, within DDA3937_RS19595at 4457.857 kb on + strand, within DDA3937_RS19595at 4457.857 kb on + strand, within DDA3937_RS19595at 4457.874 kb on + strand, within DDA3937_RS19595at 4457.874 kb on + strand, within DDA3937_RS19595at 4457.875 kb on - strand, within DDA3937_RS19595at 4457.935 kb on + strandat 4457.935 kb on + strandat 4457.935 kb on + strandat 4457.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,454,326 - DDA3937_RS19585 0.61 -2.0
4,454,326 - DDA3937_RS19585 0.61 -0.7
4,454,346 + DDA3937_RS19585 0.64 -0.4
4,454,419 + DDA3937_RS19585 0.78 +0.8
4,454,419 + DDA3937_RS19585 0.78 +1.1
4,454,420 - DDA3937_RS19585 0.78 -0.6
4,454,420 - DDA3937_RS19585 0.78 +1.9
4,454,420 - DDA3937_RS19585 0.78 -0.3
4,454,420 - DDA3937_RS19585 0.78 -1.1
4,454,420 - DDA3937_RS19585 0.78 -0.3
4,454,420 - DDA3937_RS19585 0.78 -0.1
4,454,449 + DDA3937_RS19585 0.83 -0.4
4,454,534 - +0.7
4,454,534 - -1.8
4,454,534 - -0.7
4,454,536 + -0.9
4,454,536 + -0.4
4,454,536 + +0.9
4,454,536 + +0.6
4,454,536 + -0.3
4,454,537 - -0.9
4,454,537 - -0.6
4,454,537 - +0.7
4,454,537 - -0.0
4,454,552 + -0.6
4,454,553 - +0.3
4,454,553 - -0.3
4,454,553 - -1.0
4,454,554 + +1.9
4,454,639 - -0.1
4,454,639 - +0.9
4,454,669 - +0.2
4,454,674 + -0.7
4,454,675 - +0.3
4,454,675 - +0.2
4,454,675 - +0.1
4,454,687 - -1.1
4,454,687 - +0.0
4,454,687 - -0.2
4,454,700 + -0.8
4,454,701 - -0.8
4,454,708 - +0.1
4,454,720 + +0.4
4,454,721 - -0.4
4,454,721 - -1.9
4,454,739 + +0.5
4,454,769 + -1.2
4,454,770 - -0.2
4,454,776 - +1.2
4,454,776 - +0.3
4,454,817 - +0.4
4,454,830 + -0.4
4,454,830 + +0.9
4,454,836 - +0.2
4,454,851 + +0.8
4,454,851 + -0.4
4,454,851 + -1.1
4,454,855 - +0.8
4,454,875 - +1.3
4,454,893 - +0.8
4,454,893 - +0.9
4,454,943 + +1.5
4,454,944 - -0.7
4,454,961 + +0.5
4,454,961 + -0.3
4,454,961 + +1.4
4,454,964 + +0.7
4,454,975 + +1.9
4,454,993 + +1.1
4,455,034 + +1.0
4,455,337 + -0.7
4,455,338 - DDA3937_RS19590 0.18 -0.7
4,455,602 + DDA3937_RS19590 0.30 -0.6
4,455,850 + DDA3937_RS19590 0.42 -2.8
4,456,154 + DDA3937_RS19590 0.56 -1.1
4,456,637 - DDA3937_RS19590 0.78 -0.1
4,457,038 + +0.4
4,457,038 + -0.6
4,457,038 + +0.6
4,457,039 - +0.6
4,457,039 - +0.5
4,457,039 - +1.5
4,457,042 - +1.8
4,457,042 - +1.9
4,457,042 - +0.7
4,457,042 - -0.1
4,457,086 + +0.4
4,457,086 + -2.4
4,457,086 + -0.3
4,457,086 + +2.3
4,457,086 + -1.1
4,457,086 + -0.6
4,457,087 - -0.1
4,457,087 - +1.0
4,457,087 - -0.9
4,457,087 - -0.9
4,457,087 - -1.1
4,457,087 - +0.7
4,457,087 - -0.2
4,457,092 + +0.1
4,457,136 + +0.6
4,457,225 + +0.0
4,457,225 + -0.2
4,457,225 + -1.1
4,457,226 - -1.4
4,457,226 - -1.6
4,457,226 - -0.8
4,457,233 + -1.6
4,457,233 + -0.6
4,457,233 + +1.5
4,457,276 + -1.2
4,457,276 + -0.5
4,457,276 + +0.6
4,457,276 + +0.3
4,457,276 + +1.9
4,457,276 + +1.1
4,457,276 + -0.3
4,457,276 + +0.2
4,457,277 - -1.2
4,457,277 - -0.8
4,457,277 - +0.7
4,457,277 - -1.1
4,457,277 - -0.6
4,457,277 - +0.9
4,457,277 - -0.6
4,457,277 - -0.5
4,457,277 - +1.3
4,457,277 - +1.5
4,457,277 - +0.5
4,457,277 - -0.3
4,457,277 - -0.1
4,457,377 + DDA3937_RS19595 0.12 -1.4
4,457,377 + DDA3937_RS19595 0.12 +1.7
4,457,377 + -0.1
4,457,377 + DDA3937_RS19595 0.12 -1.1
4,457,378 - DDA3937_RS19595 0.12 +0.1
4,457,464 + DDA3937_RS19595 0.24 -0.2
4,457,494 + DDA3937_RS19595 0.29 -1.8
4,457,494 + DDA3937_RS19595 0.29 +0.7
4,457,495 - DDA3937_RS19595 0.29 -0.9
4,457,507 - DDA3937_RS19595 0.30 -0.1
4,457,532 + DDA3937_RS19595 0.34 +0.2
4,457,536 + DDA3937_RS19595 0.34 +0.5
4,457,537 - DDA3937_RS19595 0.35 +0.2
4,457,537 - DDA3937_RS19595 0.35 -0.2
4,457,537 - DDA3937_RS19595 0.35 -0.6
4,457,537 - DDA3937_RS19595 0.35 -1.4
4,457,537 - DDA3937_RS19595 0.35 +2.4
4,457,537 - DDA3937_RS19595 0.35 -1.3
4,457,628 + DDA3937_RS19595 0.48 -0.8
4,457,628 + DDA3937_RS19595 0.48 -0.1
4,457,629 - DDA3937_RS19595 0.48 +1.1
4,457,633 + DDA3937_RS19595 0.48 -0.7
4,457,634 - DDA3937_RS19595 0.48 -0.8
4,457,672 + DDA3937_RS19595 0.54 -0.4
4,457,672 + DDA3937_RS19595 0.54 -0.6
4,457,672 + DDA3937_RS19595 0.54 +0.1
4,457,673 - DDA3937_RS19595 0.54 -0.5
4,457,673 - DDA3937_RS19595 0.54 +0.9
4,457,673 - DDA3937_RS19595 0.54 -0.3
4,457,673 - DDA3937_RS19595 0.54 +0.3
4,457,705 + DDA3937_RS19595 0.58 -0.2
4,457,705 + DDA3937_RS19595 0.58 +0.9
4,457,706 - +0.9
4,457,709 - DDA3937_RS19595 0.59 -1.6
4,457,721 + DDA3937_RS19595 0.61 +0.2
4,457,721 + DDA3937_RS19595 0.61 +0.9
4,457,721 + DDA3937_RS19595 0.61 +0.3
4,457,722 - DDA3937_RS19595 0.61 +0.9
4,457,722 - DDA3937_RS19595 0.61 -0.4
4,457,725 + DDA3937_RS19595 0.61 +0.1
4,457,725 + DDA3937_RS19595 0.61 -0.0
4,457,726 - DDA3937_RS19595 0.61 -0.2
4,457,753 + DDA3937_RS19595 0.65 -1.4
4,457,797 - DDA3937_RS19595 0.71 +0.9
4,457,857 + DDA3937_RS19595 0.80 -1.6
4,457,857 + DDA3937_RS19595 0.80 -0.5
4,457,874 + DDA3937_RS19595 0.82 +2.4
4,457,874 + DDA3937_RS19595 0.82 +0.3
4,457,875 - DDA3937_RS19595 0.83 -1.1
4,457,935 + -1.6
4,457,935 + +0.1
4,457,935 + +0.1
4,457,936 - -0.7

Or see this region's nucleotide sequence