Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19390 and DDA3937_RS19395 are separated by 72 nucleotides DDA3937_RS19395 and DDA3937_RS19400 are separated by 143 nucleotides DDA3937_RS19400 and DDA3937_RS19405 are separated by 68 nucleotides
DDA3937_RS19390: DDA3937_RS19390 - oxalate decarboxylase family bicupin, at 4,409,437 to 4,410,687
_RS19390
DDA3937_RS19395: DDA3937_RS19395 - peptidylprolyl isomerase, at 4,410,760 to 4,411,350
_RS19395
DDA3937_RS19400: DDA3937_RS19400 - YheV family putative metal-binding protein, at 4,411,494 to 4,411,688
_RS19400
DDA3937_RS19405: DDA3937_RS19405 - glutathione-regulated potassium-efflux system protein KefB, at 4,411,757 to 4,413,562
_RS19405
Position (kb) 4411
4412 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4410.498 kb on - strand, within DDA3937_RS19390 at 4410.669 kb on + strand at 4410.670 kb on - strand at 4410.714 kb on + strand at 4410.714 kb on + strand at 4410.714 kb on + strand at 4410.715 kb on - strand at 4410.715 kb on - strand at 4410.717 kb on + strand at 4410.718 kb on - strand at 4410.895 kb on + strand, within DDA3937_RS19395 at 4410.895 kb on + strand, within DDA3937_RS19395 at 4410.895 kb on + strand, within DDA3937_RS19395 at 4410.895 kb on + strand, within DDA3937_RS19395 at 4410.937 kb on - strand, within DDA3937_RS19395 at 4411.139 kb on + strand, within DDA3937_RS19395 at 4411.139 kb on + strand, within DDA3937_RS19395 at 4411.139 kb on + strand, within DDA3937_RS19395 at 4411.140 kb on - strand, within DDA3937_RS19395 at 4411.149 kb on - strand, within DDA3937_RS19395 at 4411.250 kb on + strand, within DDA3937_RS19395 at 4411.250 kb on + strand, within DDA3937_RS19395 at 4411.251 kb on - strand, within DDA3937_RS19395 at 4411.251 kb on - strand, within DDA3937_RS19395 at 4411.251 kb on - strand, within DDA3937_RS19395 at 4411.288 kb on + strand, within DDA3937_RS19395 at 4411.288 kb on + strand, within DDA3937_RS19395 at 4411.288 kb on + strand, within DDA3937_RS19395 at 4411.289 kb on - strand, within DDA3937_RS19395 at 4411.302 kb on + strand at 4411.303 kb on - strand at 4411.303 kb on - strand at 4411.306 kb on + strand at 4411.306 kb on + strand at 4411.307 kb on - strand at 4411.307 kb on - strand at 4411.313 kb on + strand at 4411.342 kb on + strand at 4411.342 kb on + strand at 4411.343 kb on - strand at 4411.353 kb on + strand at 4411.354 kb on - strand at 4411.354 kb on - strand at 4411.361 kb on - strand at 4411.361 kb on - strand at 4411.411 kb on + strand at 4411.411 kb on + strand at 4411.411 kb on + strand at 4411.411 kb on + strand at 4411.411 kb on + strand at 4411.411 kb on + strand at 4411.412 kb on - strand at 4411.412 kb on - strand at 4411.412 kb on - strand at 4411.412 kb on - strand at 4411.412 kb on - strand at 4411.412 kb on - strand at 4411.412 kb on - strand at 4411.412 kb on - strand at 4411.412 kb on - strand at 4411.441 kb on + strand at 4411.441 kb on + strand at 4411.441 kb on + strand at 4411.442 kb on - strand at 4411.442 kb on - strand at 4411.447 kb on - strand at 4411.447 kb on - strand at 4411.496 kb on - strand at 4411.511 kb on + strand at 4411.511 kb on + strand at 4411.512 kb on - strand at 4411.512 kb on - strand at 4411.512 kb on - strand at 4411.596 kb on + strand, within DDA3937_RS19400 at 4411.596 kb on + strand, within DDA3937_RS19400 at 4411.596 kb on + strand, within DDA3937_RS19400 at 4411.596 kb on + strand, within DDA3937_RS19400 at 4411.596 kb on + strand, within DDA3937_RS19400 at 4411.596 kb on + strand, within DDA3937_RS19400 at 4411.596 kb on + strand, within DDA3937_RS19400 at 4411.597 kb on - strand, within DDA3937_RS19400 at 4411.597 kb on - strand, within DDA3937_RS19400 at 4411.634 kb on + strand at 4411.758 kb on + strand at 4411.758 kb on + strand at 4411.816 kb on + strand at 4411.817 kb on - strand at 4411.817 kb on - strand at 4411.900 kb on + strand at 4411.900 kb on + strand at 4411.900 kb on + strand at 4411.900 kb on + strand at 4411.901 kb on - strand at 4411.901 kb on - strand at 4411.901 kb on - strand at 4411.901 kb on - strand at 4411.901 kb on - strand at 4411.901 kb on - strand at 4411.901 kb on - strand at 4412.152 kb on + strand, within DDA3937_RS19405 at 4412.152 kb on + strand, within DDA3937_RS19405 at 4412.152 kb on + strand, within DDA3937_RS19405 at 4412.152 kb on + strand, within DDA3937_RS19405 at 4412.153 kb on - strand, within DDA3937_RS19405 at 4412.221 kb on - strand, within DDA3937_RS19405 at 4412.223 kb on + strand, within DDA3937_RS19405 at 4412.224 kb on - strand, within DDA3937_RS19405 at 4412.224 kb on - strand at 4412.232 kb on + strand, within DDA3937_RS19405 at 4412.233 kb on - strand, within DDA3937_RS19405 at 4412.239 kb on - strand, within DDA3937_RS19405 at 4412.239 kb on - strand, within DDA3937_RS19405 at 4412.242 kb on + strand, within DDA3937_RS19405 at 4412.242 kb on + strand, within DDA3937_RS19405 at 4412.242 kb on + strand, within DDA3937_RS19405 at 4412.242 kb on + strand, within DDA3937_RS19405 at 4412.242 kb on + strand, within DDA3937_RS19405 at 4412.243 kb on - strand, within DDA3937_RS19405 at 4412.243 kb on - strand, within DDA3937_RS19405 at 4412.243 kb on - strand, within DDA3937_RS19405 at 4412.267 kb on - strand, within DDA3937_RS19405 at 4412.354 kb on + strand, within DDA3937_RS19405 at 4412.354 kb on + strand, within DDA3937_RS19405 at 4412.355 kb on - strand, within DDA3937_RS19405 at 4412.355 kb on - strand, within DDA3937_RS19405 at 4412.355 kb on - strand, within DDA3937_RS19405 at 4412.355 kb on - strand, within DDA3937_RS19405 at 4412.355 kb on - strand, within DDA3937_RS19405 at 4412.355 kb on - strand, within DDA3937_RS19405 at 4412.379 kb on + strand, within DDA3937_RS19405 at 4412.379 kb on + strand, within DDA3937_RS19405 at 4412.380 kb on - strand, within DDA3937_RS19405 at 4412.429 kb on - strand, within DDA3937_RS19405 at 4412.437 kb on + strand, within DDA3937_RS19405 at 4412.438 kb on - strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.467 kb on + strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.468 kb on - strand, within DDA3937_RS19405 at 4412.471 kb on + strand, within DDA3937_RS19405 at 4412.471 kb on + strand, within DDA3937_RS19405 at 4412.471 kb on + strand, within DDA3937_RS19405 at 4412.471 kb on + strand, within DDA3937_RS19405 at 4412.472 kb on - strand, within DDA3937_RS19405 at 4412.472 kb on - strand, within DDA3937_RS19405 at 4412.472 kb on - strand, within DDA3937_RS19405 at 4412.472 kb on - strand, within DDA3937_RS19405 at 4412.472 kb on - strand, within DDA3937_RS19405 at 4412.472 kb on - strand, within DDA3937_RS19405 at 4412.516 kb on + strand, within DDA3937_RS19405 at 4412.517 kb on - strand, within DDA3937_RS19405 at 4412.517 kb on - strand, within DDA3937_RS19405 at 4412.616 kb on + strand, within DDA3937_RS19405 at 4412.634 kb on + strand, within DDA3937_RS19405 at 4412.635 kb on - strand, within DDA3937_RS19405
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,410,498 - DDA3937_RS19390 0.85 -0.7 4,410,669 + -0.5 4,410,670 - -0.3 4,410,714 + +0.9 4,410,714 + +0.0 4,410,714 + +0.8 4,410,715 - +0.3 4,410,715 - -0.2 4,410,717 + -1.0 4,410,718 - +0.5 4,410,895 + DDA3937_RS19395 0.23 +0.5 4,410,895 + DDA3937_RS19395 0.23 +0.3 4,410,895 + DDA3937_RS19395 0.23 -2.2 4,410,895 + DDA3937_RS19395 0.23 +0.1 4,410,937 - DDA3937_RS19395 0.30 -0.4 4,411,139 + DDA3937_RS19395 0.64 -0.5 4,411,139 + DDA3937_RS19395 0.64 -0.5 4,411,139 + DDA3937_RS19395 0.64 +1.2 4,411,140 - DDA3937_RS19395 0.64 -0.3 4,411,149 - DDA3937_RS19395 0.66 +0.0 4,411,250 + DDA3937_RS19395 0.83 -0.9 4,411,250 + DDA3937_RS19395 0.83 -0.4 4,411,251 - DDA3937_RS19395 0.83 +1.2 4,411,251 - DDA3937_RS19395 0.83 -1.2 4,411,251 - DDA3937_RS19395 0.83 -0.2 4,411,288 + DDA3937_RS19395 0.89 +0.3 4,411,288 + DDA3937_RS19395 0.89 -1.1 4,411,288 + DDA3937_RS19395 0.89 -0.3 4,411,289 - DDA3937_RS19395 0.90 +0.5 4,411,302 + +0.7 4,411,303 - -1.4 4,411,303 - -0.5 4,411,306 + +0.9 4,411,306 + +0.2 4,411,307 - -0.3 4,411,307 - +0.3 4,411,313 + -0.3 4,411,342 + -2.0 4,411,342 + -0.9 4,411,343 - -1.7 4,411,353 + -0.7 4,411,354 - -0.1 4,411,354 - +0.1 4,411,361 - -0.5 4,411,361 - -1.4 4,411,411 + -0.3 4,411,411 + -0.4 4,411,411 + -1.1 4,411,411 + +0.2 4,411,411 + -0.7 4,411,411 + +0.9 4,411,412 - +0.8 4,411,412 - -0.5 4,411,412 - -0.7 4,411,412 - -0.0 4,411,412 - -0.1 4,411,412 - -0.5 4,411,412 - +0.5 4,411,412 - -1.2 4,411,412 - +2.1 4,411,441 + +1.2 4,411,441 + +0.3 4,411,441 + +1.5 4,411,442 - +1.4 4,411,442 - +0.0 4,411,447 - -0.5 4,411,447 - -1.4 4,411,496 - -0.4 4,411,511 + +0.2 4,411,511 + -0.3 4,411,512 - -0.5 4,411,512 - -0.0 4,411,512 - -0.9 4,411,596 + DDA3937_RS19400 0.52 -1.1 4,411,596 + DDA3937_RS19400 0.52 -1.4 4,411,596 + DDA3937_RS19400 0.52 -1.4 4,411,596 + DDA3937_RS19400 0.52 -0.5 4,411,596 + DDA3937_RS19400 0.52 -0.0 4,411,596 + DDA3937_RS19400 0.52 -0.9 4,411,596 + DDA3937_RS19400 0.52 -0.5 4,411,597 - DDA3937_RS19400 0.53 -1.2 4,411,597 - DDA3937_RS19400 0.53 -0.3 4,411,634 + +1.9 4,411,758 + -0.5 4,411,758 + -0.1 4,411,816 + +0.2 4,411,817 - -0.2 4,411,817 - -1.1 4,411,900 + +0.1 4,411,900 + +0.5 4,411,900 + -0.1 4,411,900 + -0.0 4,411,901 - +0.5 4,411,901 - +0.1 4,411,901 - +0.9 4,411,901 - +0.5 4,411,901 - -0.1 4,411,901 - -0.3 4,411,901 - +0.0 4,412,152 + DDA3937_RS19405 0.22 -1.1 4,412,152 + DDA3937_RS19405 0.22 -0.6 4,412,152 + DDA3937_RS19405 0.22 +1.4 4,412,152 + DDA3937_RS19405 0.22 -0.0 4,412,153 - DDA3937_RS19405 0.22 -0.2 4,412,221 - DDA3937_RS19405 0.26 +0.5 4,412,223 + DDA3937_RS19405 0.26 -3.1 4,412,224 - DDA3937_RS19405 0.26 -0.2 4,412,224 - +1.5 4,412,232 + DDA3937_RS19405 0.26 +0.9 4,412,233 - DDA3937_RS19405 0.26 +0.8 4,412,239 - DDA3937_RS19405 0.27 +0.8 4,412,239 - DDA3937_RS19405 0.27 +0.3 4,412,242 + DDA3937_RS19405 0.27 +0.9 4,412,242 + DDA3937_RS19405 0.27 -0.0 4,412,242 + DDA3937_RS19405 0.27 +0.5 4,412,242 + DDA3937_RS19405 0.27 +0.3 4,412,242 + DDA3937_RS19405 0.27 +1.9 4,412,243 - DDA3937_RS19405 0.27 +0.5 4,412,243 - DDA3937_RS19405 0.27 +0.5 4,412,243 - DDA3937_RS19405 0.27 +1.3 4,412,267 - DDA3937_RS19405 0.28 -2.5 4,412,354 + DDA3937_RS19405 0.33 +0.8 4,412,354 + DDA3937_RS19405 0.33 -0.1 4,412,355 - DDA3937_RS19405 0.33 -0.9 4,412,355 - DDA3937_RS19405 0.33 -0.2 4,412,355 - DDA3937_RS19405 0.33 +0.6 4,412,355 - DDA3937_RS19405 0.33 -0.0 4,412,355 - DDA3937_RS19405 0.33 +0.3 4,412,355 - DDA3937_RS19405 0.33 -0.1 4,412,379 + DDA3937_RS19405 0.34 +0.1 4,412,379 + DDA3937_RS19405 0.34 +1.2 4,412,380 - DDA3937_RS19405 0.34 -0.0 4,412,429 - DDA3937_RS19405 0.37 +0.7 4,412,437 + DDA3937_RS19405 0.38 -0.1 4,412,438 - DDA3937_RS19405 0.38 +0.1 4,412,467 + DDA3937_RS19405 0.39 -0.1 4,412,467 + DDA3937_RS19405 0.39 -0.8 4,412,467 + DDA3937_RS19405 0.39 -0.1 4,412,467 + DDA3937_RS19405 0.39 -0.9 4,412,467 + DDA3937_RS19405 0.39 -0.1 4,412,467 + DDA3937_RS19405 0.39 +0.3 4,412,467 + DDA3937_RS19405 0.39 +0.1 4,412,467 + DDA3937_RS19405 0.39 -0.5 4,412,467 + DDA3937_RS19405 0.39 +1.6 4,412,467 + DDA3937_RS19405 0.39 +0.5 4,412,467 + DDA3937_RS19405 0.39 -0.7 4,412,467 + DDA3937_RS19405 0.39 +1.4 4,412,467 + DDA3937_RS19405 0.39 -0.7 4,412,467 + DDA3937_RS19405 0.39 -0.3 4,412,467 + DDA3937_RS19405 0.39 -1.2 4,412,467 + DDA3937_RS19405 0.39 -0.9 4,412,467 + DDA3937_RS19405 0.39 -0.9 4,412,467 + DDA3937_RS19405 0.39 +0.2 4,412,467 + DDA3937_RS19405 0.39 +0.1 4,412,467 + DDA3937_RS19405 0.39 +0.6 4,412,468 - DDA3937_RS19405 0.39 +0.6 4,412,468 - DDA3937_RS19405 0.39 -0.3 4,412,468 - +0.5 4,412,468 - DDA3937_RS19405 0.39 +1.1 4,412,468 - DDA3937_RS19405 0.39 +1.0 4,412,468 - DDA3937_RS19405 0.39 -0.6 4,412,468 - DDA3937_RS19405 0.39 +1.5 4,412,468 - DDA3937_RS19405 0.39 +0.7 4,412,468 - DDA3937_RS19405 0.39 -0.1 4,412,468 - DDA3937_RS19405 0.39 +0.4 4,412,468 - DDA3937_RS19405 0.39 -0.1 4,412,468 - DDA3937_RS19405 0.39 +1.1 4,412,468 - DDA3937_RS19405 0.39 +0.8 4,412,468 - DDA3937_RS19405 0.39 -0.9 4,412,468 - DDA3937_RS19405 0.39 -1.1 4,412,468 - DDA3937_RS19405 0.39 +0.8 4,412,468 - DDA3937_RS19405 0.39 -0.2 4,412,468 - DDA3937_RS19405 0.39 -0.4 4,412,468 - DDA3937_RS19405 0.39 +0.8 4,412,468 - DDA3937_RS19405 0.39 -0.4 4,412,471 + DDA3937_RS19405 0.40 -0.1 4,412,471 + DDA3937_RS19405 0.40 +1.5 4,412,471 + DDA3937_RS19405 0.40 -0.8 4,412,471 + DDA3937_RS19405 0.40 -0.1 4,412,472 - DDA3937_RS19405 0.40 +0.7 4,412,472 - DDA3937_RS19405 0.40 +0.5 4,412,472 - DDA3937_RS19405 0.40 +0.0 4,412,472 - DDA3937_RS19405 0.40 -0.6 4,412,472 - DDA3937_RS19405 0.40 +0.6 4,412,472 - DDA3937_RS19405 0.40 -0.4 4,412,516 + DDA3937_RS19405 0.42 +0.9 4,412,517 - DDA3937_RS19405 0.42 +0.5 4,412,517 - DDA3937_RS19405 0.42 +0.5 4,412,616 + DDA3937_RS19405 0.48 +0.0 4,412,634 + DDA3937_RS19405 0.49 +0.2 4,412,635 - DDA3937_RS19405 0.49 -2.1
Or see this region's nucleotide sequence