Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18970 and DDA3937_RS18975 are separated by 12 nucleotides DDA3937_RS18975 and DDA3937_RS18980 are separated by 14 nucleotides DDA3937_RS18980 and DDA3937_RS18985 are separated by 156 nucleotides DDA3937_RS18985 and DDA3937_RS18990 are separated by 140 nucleotides
DDA3937_RS18970: DDA3937_RS18970 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 4,336,606 to 4,337,340
_RS18970
DDA3937_RS18975: DDA3937_RS18975 - fumarate reductase subunit FrdC, at 4,337,353 to 4,337,748
_RS18975
DDA3937_RS18980: DDA3937_RS18980 - fumarate reductase subunit FrdD, at 4,337,763 to 4,338,119
_RS18980
DDA3937_RS18985: DDA3937_RS18985 - outer membrane lipoprotein Blc, at 4,338,276 to 4,338,815
_RS18985
DDA3937_RS18990: DDA3937_RS18990 - DMT family protein, at 4,338,956 to 4,339,309
_RS18990
Position (kb) 4337
4338
4339 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4336.765 kb on + strand, within DDA3937_RS18970 at 4336.766 kb on - strand at 4336.839 kb on + strand, within DDA3937_RS18970 at 4336.839 kb on + strand, within DDA3937_RS18970 at 4336.839 kb on + strand, within DDA3937_RS18970 at 4336.840 kb on - strand, within DDA3937_RS18970 at 4336.859 kb on - strand, within DDA3937_RS18970 at 4336.859 kb on - strand, within DDA3937_RS18970 at 4336.859 kb on - strand, within DDA3937_RS18970 at 4336.890 kb on + strand, within DDA3937_RS18970 at 4336.962 kb on + strand, within DDA3937_RS18970 at 4336.963 kb on + strand, within DDA3937_RS18970 at 4336.963 kb on + strand, within DDA3937_RS18970 at 4336.963 kb on + strand, within DDA3937_RS18970 at 4336.963 kb on + strand, within DDA3937_RS18970 at 4336.963 kb on + strand, within DDA3937_RS18970 at 4336.963 kb on + strand, within DDA3937_RS18970 at 4336.963 kb on + strand, within DDA3937_RS18970 at 4336.963 kb on + strand, within DDA3937_RS18970 at 4336.963 kb on + strand, within DDA3937_RS18970 at 4336.964 kb on - strand, within DDA3937_RS18970 at 4336.964 kb on - strand, within DDA3937_RS18970 at 4336.964 kb on - strand, within DDA3937_RS18970 at 4336.964 kb on - strand, within DDA3937_RS18970 at 4336.964 kb on - strand, within DDA3937_RS18970 at 4336.964 kb on - strand, within DDA3937_RS18970 at 4336.964 kb on - strand, within DDA3937_RS18970 at 4336.964 kb on - strand, within DDA3937_RS18970 at 4336.964 kb on - strand, within DDA3937_RS18970 at 4336.964 kb on - strand, within DDA3937_RS18970 at 4336.965 kb on + strand, within DDA3937_RS18970 at 4336.965 kb on + strand, within DDA3937_RS18970 at 4336.966 kb on - strand, within DDA3937_RS18970 at 4336.966 kb on - strand, within DDA3937_RS18970 at 4336.966 kb on - strand, within DDA3937_RS18970 at 4336.966 kb on - strand, within DDA3937_RS18970 at 4336.966 kb on - strand, within DDA3937_RS18970 at 4336.966 kb on - strand, within DDA3937_RS18970 at 4337.032 kb on + strand, within DDA3937_RS18970 at 4337.032 kb on + strand, within DDA3937_RS18970 at 4337.032 kb on + strand, within DDA3937_RS18970 at 4337.033 kb on - strand, within DDA3937_RS18970 at 4337.033 kb on - strand, within DDA3937_RS18970 at 4337.033 kb on - strand, within DDA3937_RS18970 at 4337.033 kb on - strand, within DDA3937_RS18970 at 4337.144 kb on - strand, within DDA3937_RS18970 at 4337.181 kb on + strand, within DDA3937_RS18970 at 4337.182 kb on - strand, within DDA3937_RS18970 at 4337.182 kb on - strand, within DDA3937_RS18970 at 4337.220 kb on + strand, within DDA3937_RS18970 at 4337.221 kb on - strand, within DDA3937_RS18970 at 4337.233 kb on + strand, within DDA3937_RS18970 at 4337.290 kb on - strand at 4337.338 kb on + strand at 4337.339 kb on - strand at 4337.367 kb on + strand at 4337.368 kb on - strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.430 kb on + strand, within DDA3937_RS18975 at 4337.430 kb on + strand, within DDA3937_RS18975 at 4337.431 kb on - strand, within DDA3937_RS18975 at 4337.431 kb on - strand, within DDA3937_RS18975 at 4337.648 kb on + strand, within DDA3937_RS18975 at 4337.649 kb on - strand, within DDA3937_RS18975 at 4337.913 kb on + strand, within DDA3937_RS18980 at 4337.913 kb on + strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.939 kb on + strand, within DDA3937_RS18980 at 4338.063 kb on + strand, within DDA3937_RS18980 at 4338.063 kb on + strand, within DDA3937_RS18980 at 4338.063 kb on + strand, within DDA3937_RS18980 at 4338.117 kb on + strand at 4338.117 kb on + strand at 4338.117 kb on + strand at 4338.118 kb on - strand at 4338.118 kb on - strand at 4338.118 kb on - strand at 4338.118 kb on - strand at 4338.165 kb on - strand at 4338.235 kb on - strand at 4338.240 kb on + strand at 4338.282 kb on + strand at 4338.282 kb on + strand at 4338.282 kb on + strand at 4338.283 kb on - strand at 4338.295 kb on + strand at 4338.296 kb on - strand at 4338.296 kb on - strand at 4338.387 kb on + strand, within DDA3937_RS18985 at 4338.387 kb on + strand, within DDA3937_RS18985 at 4338.388 kb on - strand, within DDA3937_RS18985 at 4338.390 kb on - strand, within DDA3937_RS18985 at 4338.403 kb on - strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.553 kb on - strand, within DDA3937_RS18985 at 4338.553 kb on - strand, within DDA3937_RS18985 at 4338.609 kb on + strand, within DDA3937_RS18985 at 4338.619 kb on - strand, within DDA3937_RS18985 at 4338.619 kb on - strand, within DDA3937_RS18985 at 4338.619 kb on - strand, within DDA3937_RS18985 at 4338.621 kb on - strand, within DDA3937_RS18985 at 4338.625 kb on + strand, within DDA3937_RS18985 at 4338.625 kb on + strand, within DDA3937_RS18985 at 4338.625 kb on + strand, within DDA3937_RS18985 at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.626 kb on - strand at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.645 kb on + strand, within DDA3937_RS18985 at 4338.681 kb on + strand, within DDA3937_RS18985 at 4338.681 kb on + strand, within DDA3937_RS18985 at 4338.682 kb on - strand, within DDA3937_RS18985 at 4338.682 kb on - strand, within DDA3937_RS18985 at 4338.682 kb on - strand, within DDA3937_RS18985 at 4338.778 kb on + strand at 4338.779 kb on - strand at 4338.779 kb on - strand at 4338.814 kb on - strand at 4338.814 kb on - strand at 4338.814 kb on - strand at 4338.822 kb on + strand at 4338.870 kb on - strand at 4338.939 kb on + strand at 4338.939 kb on + strand at 4338.982 kb on + strand at 4338.982 kb on + strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.024 kb on - strand, within DDA3937_RS18990 at 4339.051 kb on + strand, within DDA3937_RS18990 at 4339.052 kb on - strand, within DDA3937_RS18990 at 4339.052 kb on - strand, within DDA3937_RS18990 at 4339.069 kb on + strand, within DDA3937_RS18990 at 4339.070 kb on - strand, within DDA3937_RS18990
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,336,765 + DDA3937_RS18970 0.22 +0.4 4,336,766 - +0.3 4,336,839 + DDA3937_RS18970 0.32 +1.3 4,336,839 + DDA3937_RS18970 0.32 -1.1 4,336,839 + DDA3937_RS18970 0.32 +2.2 4,336,840 - DDA3937_RS18970 0.32 -0.2 4,336,859 - DDA3937_RS18970 0.34 -2.6 4,336,859 - DDA3937_RS18970 0.34 +0.3 4,336,859 - DDA3937_RS18970 0.34 +0.5 4,336,890 + DDA3937_RS18970 0.39 -0.2 4,336,962 + DDA3937_RS18970 0.48 -0.4 4,336,963 + DDA3937_RS18970 0.49 -0.4 4,336,963 + DDA3937_RS18970 0.49 +1.5 4,336,963 + DDA3937_RS18970 0.49 +0.9 4,336,963 + DDA3937_RS18970 0.49 +0.3 4,336,963 + DDA3937_RS18970 0.49 +0.9 4,336,963 + DDA3937_RS18970 0.49 -1.4 4,336,963 + DDA3937_RS18970 0.49 -0.7 4,336,963 + DDA3937_RS18970 0.49 +0.0 4,336,963 + DDA3937_RS18970 0.49 -0.2 4,336,964 - DDA3937_RS18970 0.49 -0.0 4,336,964 - DDA3937_RS18970 0.49 -0.4 4,336,964 - DDA3937_RS18970 0.49 -0.4 4,336,964 - DDA3937_RS18970 0.49 -0.6 4,336,964 - DDA3937_RS18970 0.49 +1.6 4,336,964 - DDA3937_RS18970 0.49 +0.0 4,336,964 - DDA3937_RS18970 0.49 -1.5 4,336,964 - DDA3937_RS18970 0.49 -0.5 4,336,964 - DDA3937_RS18970 0.49 +0.2 4,336,964 - DDA3937_RS18970 0.49 -0.8 4,336,965 + DDA3937_RS18970 0.49 +0.9 4,336,965 + DDA3937_RS18970 0.49 -0.4 4,336,966 - DDA3937_RS18970 0.49 -0.4 4,336,966 - DDA3937_RS18970 0.49 +0.2 4,336,966 - DDA3937_RS18970 0.49 -0.9 4,336,966 - DDA3937_RS18970 0.49 +0.2 4,336,966 - DDA3937_RS18970 0.49 -0.5 4,336,966 - DDA3937_RS18970 0.49 +0.4 4,337,032 + DDA3937_RS18970 0.58 -0.9 4,337,032 + DDA3937_RS18970 0.58 -0.5 4,337,032 + DDA3937_RS18970 0.58 +2.6 4,337,033 - DDA3937_RS18970 0.58 +1.3 4,337,033 - DDA3937_RS18970 0.58 -0.7 4,337,033 - DDA3937_RS18970 0.58 -1.1 4,337,033 - DDA3937_RS18970 0.58 -1.0 4,337,144 - DDA3937_RS18970 0.73 +0.9 4,337,181 + DDA3937_RS18970 0.78 +0.9 4,337,182 - DDA3937_RS18970 0.78 -1.6 4,337,182 - DDA3937_RS18970 0.78 -0.7 4,337,220 + DDA3937_RS18970 0.84 -0.9 4,337,221 - DDA3937_RS18970 0.84 -1.1 4,337,233 + DDA3937_RS18970 0.85 -0.4 4,337,290 - -0.7 4,337,338 + -0.6 4,337,339 - -1.6 4,337,367 + -1.0 4,337,368 - +1.5 4,337,374 + -0.4 4,337,374 + +0.2 4,337,374 + +0.0 4,337,374 + -0.9 4,337,374 + -0.0 4,337,374 + -0.2 4,337,374 + +0.2 4,337,375 - -1.1 4,337,375 - +0.1 4,337,375 - +0.1 4,337,375 - +0.2 4,337,375 - -0.8 4,337,428 + DDA3937_RS18975 0.19 +0.3 4,337,428 + DDA3937_RS18975 0.19 +0.4 4,337,428 + DDA3937_RS18975 0.19 -0.2 4,337,428 + DDA3937_RS18975 0.19 -1.4 4,337,428 + DDA3937_RS18975 0.19 -0.5 4,337,428 + DDA3937_RS18975 0.19 -2.3 4,337,428 + DDA3937_RS18975 0.19 -0.4 4,337,428 + DDA3937_RS18975 0.19 +0.2 4,337,428 + DDA3937_RS18975 0.19 +1.7 4,337,428 + DDA3937_RS18975 0.19 -0.7 4,337,428 + +0.5 4,337,428 + DDA3937_RS18975 0.19 -0.9 4,337,429 - DDA3937_RS18975 0.19 -0.7 4,337,429 - DDA3937_RS18975 0.19 +0.1 4,337,429 - DDA3937_RS18975 0.19 +0.9 4,337,429 - DDA3937_RS18975 0.19 -1.0 4,337,429 - DDA3937_RS18975 0.19 -1.0 4,337,430 + DDA3937_RS18975 0.19 +1.4 4,337,430 + DDA3937_RS18975 0.19 -1.1 4,337,431 - DDA3937_RS18975 0.20 -0.1 4,337,431 - DDA3937_RS18975 0.20 -0.2 4,337,648 + DDA3937_RS18975 0.74 -1.0 4,337,649 - DDA3937_RS18975 0.75 +0.3 4,337,913 + DDA3937_RS18980 0.42 +0.6 4,337,913 + DDA3937_RS18980 0.42 +0.5 4,337,914 - DDA3937_RS18980 0.42 +0.1 4,337,914 - DDA3937_RS18980 0.42 -0.4 4,337,914 - DDA3937_RS18980 0.42 -1.0 4,337,914 - DDA3937_RS18980 0.42 -1.7 4,337,939 + DDA3937_RS18980 0.49 -1.1 4,338,063 + DDA3937_RS18980 0.84 -1.2 4,338,063 + DDA3937_RS18980 0.84 -0.5 4,338,063 + DDA3937_RS18980 0.84 -0.7 4,338,117 + +0.9 4,338,117 + -0.7 4,338,117 + -0.2 4,338,118 - +0.1 4,338,118 - -0.6 4,338,118 - -0.3 4,338,118 - -0.1 4,338,165 - +0.6 4,338,235 - +0.3 4,338,240 + +1.4 4,338,282 + -1.0 4,338,282 + -1.7 4,338,282 + +0.0 4,338,283 - -0.0 4,338,295 + -0.3 4,338,296 - +0.0 4,338,296 - +0.3 4,338,387 + DDA3937_RS18985 0.21 -1.0 4,338,387 + DDA3937_RS18985 0.21 -0.4 4,338,388 - DDA3937_RS18985 0.21 +0.7 4,338,390 - DDA3937_RS18985 0.21 -0.2 4,338,403 - DDA3937_RS18985 0.24 -1.1 4,338,462 + DDA3937_RS18985 0.34 -1.0 4,338,462 + DDA3937_RS18985 0.34 -0.1 4,338,462 + DDA3937_RS18985 0.34 -0.6 4,338,462 + DDA3937_RS18985 0.34 -0.2 4,338,463 - DDA3937_RS18985 0.35 -2.6 4,338,463 - DDA3937_RS18985 0.35 +0.9 4,338,463 - DDA3937_RS18985 0.35 +0.8 4,338,463 - DDA3937_RS18985 0.35 +0.5 4,338,463 - DDA3937_RS18985 0.35 +1.6 4,338,463 - DDA3937_RS18985 0.35 -1.0 4,338,552 + DDA3937_RS18985 0.51 -0.1 4,338,552 + DDA3937_RS18985 0.51 -0.2 4,338,552 + DDA3937_RS18985 0.51 -0.3 4,338,552 + DDA3937_RS18985 0.51 -0.9 4,338,553 - DDA3937_RS18985 0.51 -0.2 4,338,553 - DDA3937_RS18985 0.51 -0.3 4,338,609 + DDA3937_RS18985 0.62 -0.3 4,338,619 - DDA3937_RS18985 0.64 -1.4 4,338,619 - DDA3937_RS18985 0.64 -0.3 4,338,619 - DDA3937_RS18985 0.64 -1.9 4,338,621 - DDA3937_RS18985 0.64 -0.7 4,338,625 + DDA3937_RS18985 0.65 -0.5 4,338,625 + DDA3937_RS18985 0.65 -0.5 4,338,625 + DDA3937_RS18985 0.65 +0.2 4,338,626 - DDA3937_RS18985 0.65 -0.3 4,338,626 - DDA3937_RS18985 0.65 -2.1 4,338,626 - -0.7 4,338,626 - DDA3937_RS18985 0.65 +0.5 4,338,626 - DDA3937_RS18985 0.65 +1.2 4,338,645 + DDA3937_RS18985 0.68 -0.1 4,338,681 + DDA3937_RS18985 0.75 -0.7 4,338,681 + DDA3937_RS18985 0.75 +0.3 4,338,682 - DDA3937_RS18985 0.75 -0.7 4,338,682 - DDA3937_RS18985 0.75 +0.1 4,338,682 - DDA3937_RS18985 0.75 -1.4 4,338,778 + -0.7 4,338,779 - -0.1 4,338,779 - -0.3 4,338,814 - +0.2 4,338,814 - -0.1 4,338,814 - -0.1 4,338,822 + +0.4 4,338,870 - -0.4 4,338,939 + -0.1 4,338,939 + -2.1 4,338,982 + +1.7 4,338,982 + -0.9 4,338,983 - +0.5 4,338,983 - +0.6 4,338,983 - -1.1 4,338,983 - -0.7 4,338,983 - +1.0 4,339,021 + DDA3937_RS18990 0.18 -1.0 4,339,021 + DDA3937_RS18990 0.18 +0.0 4,339,021 + DDA3937_RS18990 0.18 +0.9 4,339,021 + DDA3937_RS18990 0.18 -0.2 4,339,021 + DDA3937_RS18990 0.18 -0.5 4,339,022 - DDA3937_RS18990 0.19 -0.1 4,339,022 - DDA3937_RS18990 0.19 +0.2 4,339,022 - DDA3937_RS18990 0.19 -0.5 4,339,022 - DDA3937_RS18990 0.19 -0.1 4,339,022 - DDA3937_RS18990 0.19 +0.9 4,339,022 - DDA3937_RS18990 0.19 +0.4 4,339,022 - DDA3937_RS18990 0.19 +0.4 4,339,024 - DDA3937_RS18990 0.19 -0.2 4,339,051 + DDA3937_RS18990 0.27 +1.3 4,339,052 - DDA3937_RS18990 0.27 -1.1 4,339,052 - DDA3937_RS18990 0.27 -2.1 4,339,069 + DDA3937_RS18990 0.32 -0.6 4,339,070 - DDA3937_RS18990 0.32 +0.2
Or see this region's nucleotide sequence