Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18580 and DDA3937_RS18585 are separated by 122 nucleotides DDA3937_RS18585 and DDA3937_RS18590 are separated by 99 nucleotides DDA3937_RS18590 and DDA3937_RS18595 are separated by 60 nucleotides
DDA3937_RS18580: DDA3937_RS18580 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 4,246,932 to 4,248,314
_RS18580
DDA3937_RS18585: DDA3937_RS18585 - adenylosuccinate synthase, at 4,248,437 to 4,249,735
_RS18585
DDA3937_RS18590: DDA3937_RS18590 - DUF2065 domain-containing protein, at 4,249,835 to 4,250,035
_RS18590
DDA3937_RS18595: DDA3937_RS18595 - protease modulator HflC, at 4,250,096 to 4,251,091
_RS18595
Position (kb) 4248
4249
4250 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4247.458 kb on - strand, within DDA3937_RS18580 at 4247.458 kb on - strand, within DDA3937_RS18580 at 4247.473 kb on + strand, within DDA3937_RS18580 at 4247.473 kb on + strand, within DDA3937_RS18580 at 4247.473 kb on + strand, within DDA3937_RS18580 at 4247.473 kb on + strand, within DDA3937_RS18580 at 4247.483 kb on + strand, within DDA3937_RS18580 at 4247.617 kb on + strand, within DDA3937_RS18580 at 4247.617 kb on + strand, within DDA3937_RS18580 at 4247.618 kb on - strand, within DDA3937_RS18580 at 4247.618 kb on - strand, within DDA3937_RS18580 at 4247.618 kb on - strand, within DDA3937_RS18580 at 4247.715 kb on + strand, within DDA3937_RS18580 at 4247.715 kb on + strand, within DDA3937_RS18580 at 4247.716 kb on - strand, within DDA3937_RS18580 at 4247.716 kb on - strand, within DDA3937_RS18580 at 4247.962 kb on + strand, within DDA3937_RS18580 at 4247.962 kb on + strand, within DDA3937_RS18580 at 4247.963 kb on - strand, within DDA3937_RS18580 at 4247.969 kb on + strand, within DDA3937_RS18580 at 4248.052 kb on + strand, within DDA3937_RS18580 at 4248.104 kb on + strand, within DDA3937_RS18580 at 4248.104 kb on + strand, within DDA3937_RS18580 at 4248.104 kb on + strand, within DDA3937_RS18580 at 4248.104 kb on + strand, within DDA3937_RS18580 at 4248.105 kb on - strand, within DDA3937_RS18580 at 4248.105 kb on - strand, within DDA3937_RS18580 at 4248.153 kb on + strand, within DDA3937_RS18580 at 4248.218 kb on + strand at 4248.218 kb on + strand at 4248.218 kb on + strand at 4248.219 kb on - strand at 4248.219 kb on - strand at 4248.219 kb on - strand at 4248.219 kb on - strand at 4248.251 kb on + strand at 4248.251 kb on + strand at 4248.252 kb on - strand at 4248.323 kb on + strand at 4248.324 kb on - strand at 4248.324 kb on - strand at 4248.334 kb on + strand at 4248.335 kb on - strand at 4248.349 kb on + strand at 4248.350 kb on - strand at 4248.387 kb on - strand at 4248.770 kb on - strand, within DDA3937_RS18585 at 4248.960 kb on + strand, within DDA3937_RS18585 at 4249.024 kb on - strand, within DDA3937_RS18585 at 4249.445 kb on - strand, within DDA3937_RS18585 at 4249.770 kb on + strand at 4249.771 kb on - strand at 4249.771 kb on - strand at 4249.771 kb on - strand at 4249.863 kb on + strand, within DDA3937_RS18590 at 4249.863 kb on + strand, within DDA3937_RS18590 at 4249.864 kb on - strand, within DDA3937_RS18590 at 4249.864 kb on - strand, within DDA3937_RS18590 at 4249.864 kb on - strand, within DDA3937_RS18590 at 4249.866 kb on + strand, within DDA3937_RS18590 at 4249.866 kb on + strand, within DDA3937_RS18590 at 4249.866 kb on + strand, within DDA3937_RS18590 at 4249.866 kb on + strand at 4249.866 kb on + strand, within DDA3937_RS18590 at 4249.867 kb on - strand, within DDA3937_RS18590 at 4249.867 kb on - strand, within DDA3937_RS18590 at 4249.867 kb on - strand, within DDA3937_RS18590 at 4249.867 kb on - strand, within DDA3937_RS18590 at 4249.961 kb on - strand, within DDA3937_RS18590 at 4249.997 kb on + strand, within DDA3937_RS18590 at 4249.998 kb on - strand, within DDA3937_RS18590 at 4249.998 kb on - strand, within DDA3937_RS18590 at 4249.998 kb on - strand, within DDA3937_RS18590 at 4249.998 kb on - strand, within DDA3937_RS18590 at 4250.189 kb on - strand at 4250.194 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,247,458 - DDA3937_RS18580 0.38 -0.4 4,247,458 - DDA3937_RS18580 0.38 +0.3 4,247,473 + DDA3937_RS18580 0.39 -0.4 4,247,473 + DDA3937_RS18580 0.39 +0.3 4,247,473 + DDA3937_RS18580 0.39 -0.7 4,247,473 + DDA3937_RS18580 0.39 -0.8 4,247,483 + DDA3937_RS18580 0.40 -1.2 4,247,617 + DDA3937_RS18580 0.50 -0.7 4,247,617 + DDA3937_RS18580 0.50 +0.4 4,247,618 - DDA3937_RS18580 0.50 -0.2 4,247,618 - DDA3937_RS18580 0.50 +1.1 4,247,618 - DDA3937_RS18580 0.50 +0.1 4,247,715 + DDA3937_RS18580 0.57 +0.7 4,247,715 + DDA3937_RS18580 0.57 -0.1 4,247,716 - DDA3937_RS18580 0.57 +0.3 4,247,716 - DDA3937_RS18580 0.57 -0.8 4,247,962 + DDA3937_RS18580 0.74 +0.0 4,247,962 + DDA3937_RS18580 0.74 +0.1 4,247,963 - DDA3937_RS18580 0.75 +0.5 4,247,969 + DDA3937_RS18580 0.75 +0.6 4,248,052 + DDA3937_RS18580 0.81 +0.4 4,248,104 + DDA3937_RS18580 0.85 +1.3 4,248,104 + DDA3937_RS18580 0.85 +0.3 4,248,104 + DDA3937_RS18580 0.85 -0.5 4,248,104 + DDA3937_RS18580 0.85 -0.3 4,248,105 - DDA3937_RS18580 0.85 +1.8 4,248,105 - DDA3937_RS18580 0.85 -0.4 4,248,153 + DDA3937_RS18580 0.88 +0.6 4,248,218 + -0.9 4,248,218 + -0.9 4,248,218 + +0.1 4,248,219 - -1.4 4,248,219 - -0.3 4,248,219 - -0.6 4,248,219 - -1.0 4,248,251 + +0.1 4,248,251 + -0.2 4,248,252 - -0.5 4,248,323 + +1.3 4,248,324 - -0.7 4,248,324 - -0.5 4,248,334 + -0.1 4,248,335 - +0.4 4,248,349 + -0.7 4,248,350 - +0.0 4,248,387 - +0.6 4,248,770 - DDA3937_RS18585 0.26 -0.3 4,248,960 + DDA3937_RS18585 0.40 -0.9 4,249,024 - DDA3937_RS18585 0.45 -2.2 4,249,445 - DDA3937_RS18585 0.78 -0.7 4,249,770 + -0.7 4,249,771 - +0.4 4,249,771 - -0.2 4,249,771 - +0.9 4,249,863 + DDA3937_RS18590 0.14 +0.2 4,249,863 + DDA3937_RS18590 0.14 +0.0 4,249,864 - DDA3937_RS18590 0.14 -1.1 4,249,864 - DDA3937_RS18590 0.14 +0.0 4,249,864 - DDA3937_RS18590 0.14 -0.6 4,249,866 + DDA3937_RS18590 0.15 -0.6 4,249,866 + DDA3937_RS18590 0.15 -0.8 4,249,866 + DDA3937_RS18590 0.15 -0.1 4,249,866 + +1.4 4,249,866 + DDA3937_RS18590 0.15 -0.6 4,249,867 - DDA3937_RS18590 0.16 -1.8 4,249,867 - DDA3937_RS18590 0.16 +0.3 4,249,867 - DDA3937_RS18590 0.16 +0.8 4,249,867 - DDA3937_RS18590 0.16 -1.3 4,249,961 - DDA3937_RS18590 0.63 +0.5 4,249,997 + DDA3937_RS18590 0.81 -1.0 4,249,998 - DDA3937_RS18590 0.81 -0.1 4,249,998 - DDA3937_RS18590 0.81 -0.1 4,249,998 - DDA3937_RS18590 0.81 -0.6 4,249,998 - DDA3937_RS18590 0.81 +0.3 4,250,189 - +1.5 4,250,194 + -1.1
Or see this region's nucleotide sequence