Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18230 and DDA3937_RS18235 are separated by 271 nucleotides DDA3937_RS18235 and DDA3937_RS18240 are separated by 64 nucleotides DDA3937_RS18240 and DDA3937_RS18245 are separated by 63 nucleotides
DDA3937_RS18230: DDA3937_RS18230 - DNA polymerase II, at 4,160,038 to 4,162,410
_RS18230
DDA3937_RS18235: DDA3937_RS18235 - RNA polymerase-associated protein RapA, at 4,162,682 to 4,165,585
_RS18235
DDA3937_RS18240: DDA3937_RS18240 - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 4,165,650 to 4,166,303
_RS18240
DDA3937_RS18245: DDA3937_RS18245 - co-chaperone DjlA, at 4,166,367 to 4,167,347
_RS18245
Position (kb) 4162
4163
4164
4165
4166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4161.682 kb on + strand, within DDA3937_RS18230 at 4161.714 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.770 kb on - strand, within DDA3937_RS18230 at 4161.770 kb on - strand, within DDA3937_RS18230 at 4161.770 kb on - strand, within DDA3937_RS18230 at 4161.838 kb on + strand, within DDA3937_RS18230 at 4162.015 kb on + strand, within DDA3937_RS18230 at 4162.015 kb on + strand, within DDA3937_RS18230 at 4162.042 kb on + strand, within DDA3937_RS18230 at 4162.063 kb on + strand, within DDA3937_RS18230 at 4162.063 kb on + strand, within DDA3937_RS18230 at 4162.063 kb on + strand, within DDA3937_RS18230 at 4162.063 kb on + strand, within DDA3937_RS18230 at 4162.064 kb on - strand, within DDA3937_RS18230 at 4162.108 kb on + strand at 4162.108 kb on + strand, within DDA3937_RS18230 at 4162.166 kb on + strand, within DDA3937_RS18230 at 4162.205 kb on - strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.303 kb on + strand at 4162.304 kb on - strand at 4162.304 kb on - strand at 4162.312 kb on + strand at 4162.313 kb on - strand at 4162.313 kb on - strand at 4162.347 kb on + strand at 4162.347 kb on + strand at 4162.348 kb on - strand at 4162.348 kb on - strand at 4162.377 kb on + strand at 4162.377 kb on + strand at 4162.377 kb on + strand at 4162.378 kb on - strand at 4162.378 kb on - strand at 4162.404 kb on - strand at 4162.404 kb on - strand at 4162.408 kb on + strand at 4162.409 kb on - strand at 4162.409 kb on - strand at 4162.461 kb on - strand at 4162.461 kb on - strand at 4162.505 kb on + strand at 4162.506 kb on - strand at 4162.520 kb on + strand at 4162.520 kb on + strand at 4162.520 kb on + strand at 4162.521 kb on - strand at 4162.521 kb on - strand at 4162.521 kb on - strand at 4162.607 kb on + strand at 4162.674 kb on + strand at 4162.675 kb on - strand at 4162.675 kb on - strand at 4162.675 kb on - strand at 4162.675 kb on - strand at 4162.681 kb on + strand at 4162.682 kb on - strand at 4162.690 kb on + strand at 4162.690 kb on + strand at 4162.690 kb on + strand at 4162.691 kb on - strand at 4162.691 kb on - strand at 4162.691 kb on - strand at 4162.808 kb on + strand at 4162.809 kb on - strand at 4162.858 kb on + strand at 4162.859 kb on - strand at 4162.865 kb on - strand at 4162.887 kb on + strand at 4162.888 kb on - strand at 4162.888 kb on - strand at 4162.888 kb on - strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.929 kb on - strand at 4162.929 kb on - strand at 4162.929 kb on - strand at 4162.929 kb on - strand at 4163.005 kb on + strand, within DDA3937_RS18235 at 4163.005 kb on + strand, within DDA3937_RS18235 at 4163.006 kb on - strand, within DDA3937_RS18235 at 4163.455 kb on - strand, within DDA3937_RS18235 at 4163.536 kb on - strand, within DDA3937_RS18235 at 4163.564 kb on + strand, within DDA3937_RS18235 at 4163.564 kb on + strand, within DDA3937_RS18235 at 4163.564 kb on + strand, within DDA3937_RS18235 at 4163.565 kb on - strand, within DDA3937_RS18235 at 4163.694 kb on - strand, within DDA3937_RS18235 at 4163.694 kb on - strand, within DDA3937_RS18235 at 4163.694 kb on - strand, within DDA3937_RS18235 at 4163.723 kb on + strand, within DDA3937_RS18235 at 4163.724 kb on - strand, within DDA3937_RS18235 at 4164.008 kb on + strand, within DDA3937_RS18235 at 4164.008 kb on + strand, within DDA3937_RS18235 at 4164.009 kb on - strand, within DDA3937_RS18235 at 4164.098 kb on + strand, within DDA3937_RS18235 at 4164.099 kb on - strand, within DDA3937_RS18235 at 4164.247 kb on - strand, within DDA3937_RS18235 at 4164.247 kb on - strand, within DDA3937_RS18235 at 4164.247 kb on - strand, within DDA3937_RS18235 at 4164.323 kb on + strand, within DDA3937_RS18235 at 4164.324 kb on - strand, within DDA3937_RS18235 at 4164.324 kb on - strand, within DDA3937_RS18235 at 4164.426 kb on + strand, within DDA3937_RS18235 at 4164.426 kb on + strand, within DDA3937_RS18235 at 4164.427 kb on - strand, within DDA3937_RS18235 at 4164.427 kb on - strand, within DDA3937_RS18235 at 4164.512 kb on + strand, within DDA3937_RS18235 at 4164.513 kb on - strand, within DDA3937_RS18235 at 4164.617 kb on + strand, within DDA3937_RS18235 at 4164.631 kb on + strand, within DDA3937_RS18235 at 4164.859 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4165.083 kb on - strand, within DDA3937_RS18235 at 4165.136 kb on + strand, within DDA3937_RS18235 at 4165.136 kb on + strand, within DDA3937_RS18235 at 4165.136 kb on + strand, within DDA3937_RS18235 at 4165.136 kb on + strand, within DDA3937_RS18235 at 4165.137 kb on - strand, within DDA3937_RS18235 at 4165.291 kb on + strand, within DDA3937_RS18235 at 4165.583 kb on + strand at 4165.583 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.602 kb on - strand at 4165.602 kb on - strand at 4165.603 kb on + strand at 4165.603 kb on + strand at 4165.603 kb on + strand at 4165.603 kb on + strand at 4165.604 kb on - strand at 4165.604 kb on - strand at 4165.604 kb on - strand at 4165.604 kb on - strand at 4165.605 kb on + strand at 4165.605 kb on + strand at 4165.605 kb on + strand at 4165.605 kb on + strand at 4165.605 kb on + strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.659 kb on + strand at 4165.660 kb on - strand at 4165.781 kb on + strand, within DDA3937_RS18240 at 4165.781 kb on + strand, within DDA3937_RS18240 at 4165.781 kb on + strand, within DDA3937_RS18240 at 4165.781 kb on + strand, within DDA3937_RS18240 at 4165.782 kb on - strand at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.929 kb on + strand, within DDA3937_RS18240 at 4165.929 kb on + strand, within DDA3937_RS18240 at 4165.930 kb on - strand, within DDA3937_RS18240 at 4165.930 kb on - strand, within DDA3937_RS18240 at 4165.930 kb on - strand, within DDA3937_RS18240 at 4165.930 kb on - strand, within DDA3937_RS18240 at 4166.185 kb on - strand, within DDA3937_RS18240 at 4166.185 kb on - strand, within DDA3937_RS18240 at 4166.185 kb on - strand, within DDA3937_RS18240 at 4166.264 kb on + strand at 4166.351 kb on - strand at 4166.395 kb on + strand at 4166.395 kb on + strand at 4166.395 kb on + strand at 4166.396 kb on - strand at 4166.396 kb on - strand at 4166.396 kb on - strand at 4166.402 kb on - strand at 4166.414 kb on + strand at 4166.559 kb on - strand, within DDA3937_RS18245
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,161,682 + DDA3937_RS18230 0.69 +0.2 4,161,714 + DDA3937_RS18230 0.71 +0.2 4,161,769 + DDA3937_RS18230 0.73 +0.3 4,161,769 + DDA3937_RS18230 0.73 -0.0 4,161,769 + DDA3937_RS18230 0.73 -0.2 4,161,769 + DDA3937_RS18230 0.73 -1.0 4,161,769 + DDA3937_RS18230 0.73 -0.5 4,161,769 + DDA3937_RS18230 0.73 -0.0 4,161,770 - DDA3937_RS18230 0.73 +0.4 4,161,770 - DDA3937_RS18230 0.73 +0.5 4,161,770 - DDA3937_RS18230 0.73 +0.8 4,161,838 + DDA3937_RS18230 0.76 -0.8 4,162,015 + DDA3937_RS18230 0.83 -0.5 4,162,015 + DDA3937_RS18230 0.83 -1.1 4,162,042 + DDA3937_RS18230 0.84 +0.5 4,162,063 + DDA3937_RS18230 0.85 -2.0 4,162,063 + DDA3937_RS18230 0.85 +1.2 4,162,063 + DDA3937_RS18230 0.85 -0.0 4,162,063 + DDA3937_RS18230 0.85 -3.2 4,162,064 - DDA3937_RS18230 0.85 -0.5 4,162,108 + +0.8 4,162,108 + DDA3937_RS18230 0.87 -1.4 4,162,166 + DDA3937_RS18230 0.90 -0.4 4,162,205 - -0.0 4,162,246 + -2.0 4,162,246 + -0.3 4,162,246 + -0.8 4,162,246 + +1.4 4,162,246 + -2.0 4,162,246 + +0.2 4,162,246 + +1.7 4,162,246 + +0.1 4,162,246 + -1.2 4,162,246 + -0.4 4,162,247 - -0.8 4,162,247 - -0.8 4,162,247 - +0.7 4,162,247 - -1.0 4,162,247 - -0.2 4,162,247 - -0.6 4,162,247 - +0.3 4,162,303 + +2.1 4,162,304 - -0.2 4,162,304 - +1.1 4,162,312 + -0.3 4,162,313 - -2.8 4,162,313 - -1.2 4,162,347 + -0.2 4,162,347 + -0.3 4,162,348 - -1.8 4,162,348 - -0.2 4,162,377 + -1.0 4,162,377 + +0.2 4,162,377 + -0.2 4,162,378 - -1.3 4,162,378 - -1.1 4,162,404 - -0.2 4,162,404 - +1.0 4,162,408 + -0.2 4,162,409 - -0.5 4,162,409 - +0.4 4,162,461 - -0.7 4,162,461 - -0.9 4,162,505 + +0.3 4,162,506 - -0.9 4,162,520 + +1.7 4,162,520 + -0.8 4,162,520 + +0.1 4,162,521 - -1.9 4,162,521 - -0.8 4,162,521 - -0.8 4,162,607 + +1.3 4,162,674 + -1.8 4,162,675 - -1.8 4,162,675 - -2.6 4,162,675 - -1.3 4,162,675 - -1.8 4,162,681 + -1.4 4,162,682 - -0.8 4,162,690 + -1.8 4,162,690 + -0.9 4,162,690 + -1.9 4,162,691 - -2.4 4,162,691 - -1.4 4,162,691 - -1.2 4,162,808 + +0.4 4,162,809 - +1.1 4,162,858 + -2.2 4,162,859 - -0.8 4,162,865 - -1.4 4,162,887 + -1.5 4,162,888 - -0.2 4,162,888 - -0.9 4,162,888 - -1.3 4,162,928 + -1.1 4,162,928 + -3.4 4,162,928 + -1.8 4,162,928 + -1.4 4,162,928 + -0.9 4,162,928 + -2.7 4,162,928 + +0.1 4,162,928 + -2.1 4,162,929 - -2.0 4,162,929 - -3.0 4,162,929 - -0.3 4,162,929 - -2.8 4,163,005 + DDA3937_RS18235 0.11 -2.1 4,163,005 + DDA3937_RS18235 0.11 -1.3 4,163,006 - DDA3937_RS18235 0.11 -1.3 4,163,455 - DDA3937_RS18235 0.27 -1.0 4,163,536 - DDA3937_RS18235 0.29 -1.8 4,163,564 + DDA3937_RS18235 0.30 -2.5 4,163,564 + DDA3937_RS18235 0.30 -2.1 4,163,564 + DDA3937_RS18235 0.30 -1.2 4,163,565 - DDA3937_RS18235 0.30 -1.8 4,163,694 - DDA3937_RS18235 0.35 -0.0 4,163,694 - DDA3937_RS18235 0.35 -2.8 4,163,694 - DDA3937_RS18235 0.35 -1.3 4,163,723 + DDA3937_RS18235 0.36 -1.2 4,163,724 - DDA3937_RS18235 0.36 -3.5 4,164,008 + DDA3937_RS18235 0.46 -1.1 4,164,008 + DDA3937_RS18235 0.46 -1.7 4,164,009 - DDA3937_RS18235 0.46 -1.5 4,164,098 + DDA3937_RS18235 0.49 -0.8 4,164,099 - DDA3937_RS18235 0.49 -1.2 4,164,247 - DDA3937_RS18235 0.54 -0.9 4,164,247 - DDA3937_RS18235 0.54 -0.9 4,164,247 - DDA3937_RS18235 0.54 -1.2 4,164,323 + DDA3937_RS18235 0.57 -0.2 4,164,324 - DDA3937_RS18235 0.57 -1.3 4,164,324 - DDA3937_RS18235 0.57 -1.0 4,164,426 + DDA3937_RS18235 0.60 -2.5 4,164,426 + DDA3937_RS18235 0.60 -2.0 4,164,427 - DDA3937_RS18235 0.60 -1.2 4,164,427 - DDA3937_RS18235 0.60 -2.6 4,164,512 + DDA3937_RS18235 0.63 -1.8 4,164,513 - DDA3937_RS18235 0.63 -2.0 4,164,617 + DDA3937_RS18235 0.67 -1.2 4,164,631 + DDA3937_RS18235 0.67 -1.9 4,164,859 + DDA3937_RS18235 0.75 -2.0 4,164,913 + DDA3937_RS18235 0.77 -1.8 4,164,913 + DDA3937_RS18235 0.77 -2.4 4,164,913 + DDA3937_RS18235 0.77 -2.4 4,164,913 + DDA3937_RS18235 0.77 -1.2 4,164,913 + DDA3937_RS18235 0.77 -2.2 4,164,913 + DDA3937_RS18235 0.77 +0.1 4,164,913 + DDA3937_RS18235 0.77 -1.3 4,164,914 - DDA3937_RS18235 0.77 +1.8 4,164,914 - DDA3937_RS18235 0.77 -1.4 4,164,914 - DDA3937_RS18235 0.77 -2.2 4,164,914 - DDA3937_RS18235 0.77 -3.5 4,164,914 - DDA3937_RS18235 0.77 -3.0 4,164,914 - DDA3937_RS18235 0.77 -2.7 4,165,083 - DDA3937_RS18235 0.83 -0.9 4,165,136 + DDA3937_RS18235 0.85 -1.0 4,165,136 + DDA3937_RS18235 0.85 -1.7 4,165,136 + DDA3937_RS18235 0.85 -2.7 4,165,136 + DDA3937_RS18235 0.85 +0.3 4,165,137 - DDA3937_RS18235 0.85 -2.0 4,165,291 + DDA3937_RS18235 0.90 -1.7 4,165,583 + -1.7 4,165,583 + -0.9 4,165,601 + -0.8 4,165,601 + +0.7 4,165,601 + +0.5 4,165,601 + -1.5 4,165,601 + -0.8 4,165,601 + -0.7 4,165,601 + -0.6 4,165,601 + -1.2 4,165,602 - -1.9 4,165,602 - +0.3 4,165,603 + -0.6 4,165,603 + +1.1 4,165,603 + -0.7 4,165,603 + -0.4 4,165,604 - -0.5 4,165,604 - +0.2 4,165,604 - -0.8 4,165,604 - -0.3 4,165,605 + -2.5 4,165,605 + -1.2 4,165,605 + -0.8 4,165,605 + -0.4 4,165,605 + -0.8 4,165,606 - +0.7 4,165,606 - -0.2 4,165,606 - +0.8 4,165,606 - -0.1 4,165,606 - +1.4 4,165,606 - -0.6 4,165,606 - -0.6 4,165,606 - -1.8 4,165,606 - -0.4 4,165,659 + -2.2 4,165,660 - -0.1 4,165,781 + DDA3937_RS18240 0.20 -0.4 4,165,781 + DDA3937_RS18240 0.20 -0.7 4,165,781 + DDA3937_RS18240 0.20 -1.2 4,165,781 + DDA3937_RS18240 0.20 +1.5 4,165,782 - +1.8 4,165,782 - DDA3937_RS18240 0.20 +1.1 4,165,782 - DDA3937_RS18240 0.20 -0.4 4,165,782 - DDA3937_RS18240 0.20 -0.4 4,165,782 - DDA3937_RS18240 0.20 +0.2 4,165,782 - DDA3937_RS18240 0.20 -0.1 4,165,782 - DDA3937_RS18240 0.20 +0.2 4,165,929 + DDA3937_RS18240 0.43 -2.7 4,165,929 + DDA3937_RS18240 0.43 +0.3 4,165,930 - DDA3937_RS18240 0.43 +0.3 4,165,930 - DDA3937_RS18240 0.43 -0.0 4,165,930 - DDA3937_RS18240 0.43 -1.3 4,165,930 - DDA3937_RS18240 0.43 +1.1 4,166,185 - DDA3937_RS18240 0.82 +0.4 4,166,185 - DDA3937_RS18240 0.82 -0.6 4,166,185 - DDA3937_RS18240 0.82 -1.7 4,166,264 + -0.8 4,166,351 - +0.5 4,166,395 + -0.6 4,166,395 + -0.4 4,166,395 + +1.5 4,166,396 - -0.6 4,166,396 - -0.5 4,166,396 - -0.5 4,166,402 - +1.2 4,166,414 + +0.1 4,166,559 - DDA3937_RS18245 0.20 -2.5
Or see this region's nucleotide sequence