Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18080

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18070 and DDA3937_RS18075 are separated by 22 nucleotidesDDA3937_RS18075 and DDA3937_RS18080 overlap by 4 nucleotidesDDA3937_RS18080 and DDA3937_RS18085 are separated by 2 nucleotides DDA3937_RS18070: DDA3937_RS18070 - peptidoglycan glycosyltransferase FtsI, at 4,124,460 to 4,126,223 _RS18070 DDA3937_RS18075: DDA3937_RS18075 - cell division protein FtsL, at 4,126,246 to 4,126,569 _RS18075 DDA3937_RS18080: DDA3937_RS18080 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 4,126,566 to 4,127,507 _RS18080 DDA3937_RS18085: DDA3937_RS18085 - division/cell wall cluster transcriptional repressor MraZ, at 4,127,510 to 4,127,968 _RS18085 Position (kb) 4126 4127 4128Strain fitness (log2 ratio) -2 -1 0 1at 4126.267 kb on - strandat 4126.791 kb on - strand, within DDA3937_RS18080at 4126.791 kb on - strand, within DDA3937_RS18080at 4126.877 kb on - strand, within DDA3937_RS18080at 4126.877 kb on - strandat 4126.881 kb on - strandat 4127.127 kb on - strand, within DDA3937_RS18080at 4127.313 kb on - strand, within DDA3937_RS18080at 4127.512 kb on - strandat 4127.512 kb on - strandat 4127.512 kb on - strandat 4127.512 kb on - strandat 4127.512 kb on - strandat 4127.514 kb on - strandat 4127.514 kb on - strandat 4127.514 kb on - strandat 4127.514 kb on - strandat 4127.520 kb on - strandat 4127.520 kb on - strandat 4127.520 kb on - strandat 4127.520 kb on - strandat 4127.520 kb on - strandat 4127.541 kb on - strandat 4127.657 kb on - strand, within DDA3937_RS18085at 4127.681 kb on - strand, within DDA3937_RS18085at 4127.681 kb on - strand, within DDA3937_RS18085at 4127.681 kb on - strand, within DDA3937_RS18085at 4127.774 kb on - strand, within DDA3937_RS18085at 4127.827 kb on - strand, within DDA3937_RS18085at 4127.827 kb on - strand, within DDA3937_RS18085at 4127.827 kb on - strand, within DDA3937_RS18085at 4127.975 kb on - strandat 4127.975 kb on - strandat 4127.975 kb on - strandat 4127.975 kb on - strandat 4128.085 kb on + strandat 4128.162 kb on + strandat 4128.204 kb on + strandat 4128.205 kb on - strandat 4128.228 kb on + strandat 4128.229 kb on - strandat 4128.231 kb on + strandat 4128.231 kb on + strandat 4128.274 kb on + strandat 4128.414 kb on - strandat 4128.428 kb on + strandat 4128.429 kb on - strandat 4128.433 kb on - strandat 4128.433 kb on - strandat 4128.433 kb on - strandat 4128.479 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,126,267 - -0.5
4,126,791 - DDA3937_RS18080 0.24 -2.1
4,126,791 - DDA3937_RS18080 0.24 -0.2
4,126,877 - DDA3937_RS18080 0.33 -1.0
4,126,877 - -0.8
4,126,881 - -0.2
4,127,127 - DDA3937_RS18080 0.60 +0.6
4,127,313 - DDA3937_RS18080 0.79 -1.9
4,127,512 - +0.2
4,127,512 - -2.4
4,127,512 - -1.5
4,127,512 - -0.8
4,127,512 - -1.4
4,127,514 - -0.0
4,127,514 - -0.6
4,127,514 - -1.4
4,127,514 - -0.2
4,127,520 - -0.8
4,127,520 - -0.6
4,127,520 - +0.2
4,127,520 - -0.1
4,127,520 - -0.6
4,127,541 - -0.7
4,127,657 - DDA3937_RS18085 0.32 +0.8
4,127,681 - DDA3937_RS18085 0.37 +0.9
4,127,681 - DDA3937_RS18085 0.37 -0.5
4,127,681 - DDA3937_RS18085 0.37 +0.1
4,127,774 - DDA3937_RS18085 0.58 +0.8
4,127,827 - DDA3937_RS18085 0.69 -0.2
4,127,827 - DDA3937_RS18085 0.69 -1.5
4,127,827 - DDA3937_RS18085 0.69 -2.2
4,127,975 - -1.1
4,127,975 - -2.4
4,127,975 - -1.2
4,127,975 - -1.4
4,128,085 + -0.7
4,128,162 + +0.4
4,128,204 + +0.8
4,128,205 - -0.6
4,128,228 + -1.2
4,128,229 - -0.3
4,128,231 + +0.0
4,128,231 + -0.1
4,128,274 + -1.2
4,128,414 - -0.1
4,128,428 + -1.1
4,128,429 - +1.5
4,128,433 - -0.0
4,128,433 - +0.2
4,128,433 - -0.1
4,128,479 - -0.5

Or see this region's nucleotide sequence