Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18000 and DDA3937_RS18005 are separated by 97 nucleotides DDA3937_RS18005 and DDA3937_RS18010 are separated by 27 nucleotides DDA3937_RS18010 and DDA3937_RS18015 are separated by 16 nucleotides
DDA3937_RS18000: DDA3937_RS18000 - preprotein translocase subunit SecA, at 4,107,073 to 4,109,760
_RS18000
DDA3937_RS18005: DDA3937_RS18005 - secA regulator SecM, at 4,109,858 to 4,110,361
_RS18005
DDA3937_RS18010: DDA3937_RS18010 - DUF721 domain-containing protein, at 4,110,389 to 4,110,910
_RS18010
DDA3937_RS18015: DDA3937_RS18015 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 4,110,927 to 4,111,844
_RS18015
Position (kb)
4110
4111 Strain fitness (log2 ratio)
-1
0
1 at 4109.823 kb on - strand at 4109.851 kb on - strand at 4110.015 kb on - strand at 4110.071 kb on - strand, within DDA3937_RS18005 at 4110.190 kb on - strand, within DDA3937_RS18005 at 4110.190 kb on - strand, within DDA3937_RS18005 at 4110.236 kb on - strand, within DDA3937_RS18005 at 4110.236 kb on - strand, within DDA3937_RS18005 at 4110.319 kb on - strand at 4110.319 kb on - strand at 4110.807 kb on + strand, within DDA3937_RS18010 at 4110.886 kb on + strand at 4110.886 kb on + strand at 4110.887 kb on - strand at 4110.887 kb on - strand at 4110.914 kb on + strand at 4110.914 kb on + strand at 4110.914 kb on + strand at 4110.914 kb on + strand at 4110.914 kb on + strand at 4110.914 kb on + strand at 4110.914 kb on + strand at 4110.914 kb on + strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.915 kb on - strand at 4110.918 kb on + strand at 4110.918 kb on + strand at 4110.918 kb on + strand at 4110.919 kb on - strand at 4110.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,109,823 - -0.4 4,109,851 - -0.6 4,110,015 - +0.2 4,110,071 - DDA3937_RS18005 0.42 +0.5 4,110,190 - DDA3937_RS18005 0.66 -0.3 4,110,190 - DDA3937_RS18005 0.66 -0.0 4,110,236 - DDA3937_RS18005 0.75 -0.2 4,110,236 - DDA3937_RS18005 0.75 -0.4 4,110,319 - +1.2 4,110,319 - -0.8 4,110,807 + DDA3937_RS18010 0.80 -1.2 4,110,886 + +0.1 4,110,886 + -1.0 4,110,887 - +0.8 4,110,887 - -0.3 4,110,914 + +0.8 4,110,914 + +0.9 4,110,914 + -0.6 4,110,914 + -0.3 4,110,914 + +1.1 4,110,914 + +0.5 4,110,914 + +0.8 4,110,914 + +0.4 4,110,915 - +0.7 4,110,915 - +0.5 4,110,915 - +0.6 4,110,915 - +0.5 4,110,915 - -0.2 4,110,915 - -0.2 4,110,915 - -0.5 4,110,915 - -0.4 4,110,915 - +0.4 4,110,915 - +1.0 4,110,915 - -0.8 4,110,915 - +0.3 4,110,915 - +0.1 4,110,915 - +0.7 4,110,915 - -0.2 4,110,915 - +0.8 4,110,918 + +0.9 4,110,918 + -0.1 4,110,918 + +0.3 4,110,919 - -0.5 4,110,919 - +0.8
Or see this region's nucleotide sequence